From a.ghisla at gmail.com Fri Jul 3 08:51:56 2009 From: a.ghisla at gmail.com (Anne Ghisla) Date: Fri Jul 3 08:51:32 2009 Subject: [GRASS-stats] [Report #6] Kriging with GRASS and R: v.autokrige port to wxPython and more Message-ID: <1246625516.7011.10.camel@galadriel.uagra.net> Hello all, and sorry for cross-posting, this week I worked on removing parameters hardwired in the code, binding them to the interface instead. Therefore, now it is possible use all widgets in gstat and automap pages, i.e. pick up the model from a list, set sill, nugget and range; set the output raster map name and eventually overwrite it. I'm going to implement CLI in these next days, it will very likely need to reorganise the code and clearly split interface from model. Blocking issues - none. best regards, Anne More info on the wiki page - updated daily: http://grass.osgeo.org/wiki/V.autokrige_GSoC_2009 -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 197 bytes Desc: Questa =?ISO-8859-1?Q?=E8?= una parte del messaggio firmata digitalmente Url : http://lists.osgeo.org/pipermail/grass-stats/attachments/20090703/96696fb4/attachment.bin From a.ghisla at gmail.com Fri Jul 10 10:06:55 2009 From: a.ghisla at gmail.com (Anne Ghisla) Date: Fri Jul 10 10:06:14 2009 Subject: [GRASS-stats] [Report #7 - midterm] Kriging with GRASS and R: v.autokrige port to wxPython and more Message-ID: <1247234815.4282.21.camel@galadriel.uagra.net> Hello all, and sorry for cross-posting, this week has been full of improvements: - CLI with optional arguments is up and running - interface creation is no more delayed by vector map filtering - dependencies are checked all at the beginning - no risk of mid-process crashes if something is missing - automap page merged with gstat: they share the same algorithms - geoR page hidden, no implementation yet - deep refactoring of the rpy code, moved into a separate controller class - interface fills up all options except input data map - minimum interaction required (2 clicks) next week I plan to implement the splashscreen and add further functionalities, hopefully different kriging techniques. Blocking issues - none. best regards, Anne More info on the wiki page - updated daily: http://grass.osgeo.org/wiki/V.krige_GSoC_2009 -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 197 bytes Desc: Questa =?ISO-8859-1?Q?=E8?= una parte del messaggio firmata digitalmente Url : http://lists.osgeo.org/pipermail/grass-stats/attachments/20090710/90222b94/attachment.bin From j.m.signer at gmail.com Tue Jul 14 02:25:18 2009 From: j.m.signer at gmail.com (Johannes Signer) Date: Tue Jul 14 02:25:25 2009 Subject: [GRASS-stats] Extracting x,y-coordinates from a SGDF Message-ID: Dear List-Members, I encountered a problem with with importing data from GRASS to R. I found a work around to my problem, but maybe someone is aware of a more elegant solution. I imported a raster from GRASS to R with the readRAST6() method. My ultimate goal is to get a a new data.frame which looks like this: x-coordinate | y-coordinate | z-value I managed to extract the z-value from the data slot of the SGDF, but I did not manage to extract the x and y values. My current work around is to write a function recalculating the grid points from the information provided within the SGDF. However if anyone is aware of a easier method of how to extract x and y values from a SGDF I would be very interested. Many thanks in advance Johannes -------------- next part -------------- An HTML attachment was scrubbed... URL: http://lists.osgeo.org/pipermail/grass-stats/attachments/20090714/4ad1bf63/attachment.html From Roger.Bivand at nhh.no Tue Jul 14 03:41:56 2009 From: Roger.Bivand at nhh.no (Roger Bivand) Date: Tue Jul 14 03:41:59 2009 Subject: [GRASS-stats] Extracting x,y-coordinates from a SGDF In-Reply-To: References: Message-ID: On Tue, 14 Jul 2009, Johannes Signer wrote: > Dear List-Members, > > I encountered a problem with with importing data from GRASS to R. I found a > work around to my problem, but maybe someone is aware of a more elegant > solution. > > I imported a raster from GRASS to R with the readRAST6() method. My > ultimate goal is to get a a new data.frame which looks like this: > > x-coordinate | y-coordinate | z-value > For example: library(sp) data(meuse.grid) coordinates(meuse.grid) <- c("x", "y") gridded(meuse.grid) <- TRUE fullgrid(meuse.grid) <- TRUE class(meuse.grid) df <- as(as(meuse.grid, "SpatialPointsDataFrame"), "data.frame") str(df) Because this example coerces to SpatialGridDataFrame, on the way back raster cells with no attribute values are dropped. str(coordinates(meuse.grid)) retrieves all the cells, whether missing attribute values or not. So assuming you want "soil": df1 <- data.frame(coordinates(meuse.grid), soil=meuse.grid$soil) str(df1) will do that. Hope this helps, Roger > > > I managed to extract the z-value from the data slot of the SGDF, but I did > not manage to extract the x and y values. > > My current work around is to write a function recalculating the grid points > from the information provided within the SGDF. However if anyone is aware of > a easier method of how to extract x and y values from a SGDF I would be very > interested. > > Many thanks in advance > > Johannes > -- Roger Bivand Economic Geography Section, Department of Economics, Norwegian School of Economics and Business Administration, Helleveien 30, N-5045 Bergen, Norway. voice: +47 55 95 93 55; fax +47 55 95 95 43 e-mail: Roger.Bivand@nhh.no From a.ghisla at gmail.com Fri Jul 17 11:01:49 2009 From: a.ghisla at gmail.com (Anne Ghisla) Date: Fri Jul 17 11:02:53 2009 Subject: [GRASS-stats] [Report #8 - midterm] Kriging with GRASS and R: v.autokrige port to wxPython and more Message-ID: <4A60925D.6020907@gmail.com> -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hello all, and sorry for cross-posting, this week I added Command output tab and the option for block kriging, and updated documentation with more precise information on dependencies. I'll add splashscreen only as dependency check and command output will be fixed: next week I plan to work on these latter issues. Nothing in particular is blocking progress, just some hardest stone sometimes. best regards, Anne - -- http://grass.osgeo.org/wiki/V.krige_GSoC_2009 -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.9 (MingW32) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iEYEARECAAYFAkpgkl0ACgkQzZ3g4YwFFgagkwCfWZIfdxXjZPk6Eo/896Bl+c5+ NJMAn1Ytsu/smc8WPxHchaGryyyHQOe7 =rffE -----END PGP SIGNATURE----- From nikos.alexandris at felis.uni-freiburg.de Mon Jul 27 21:31:29 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Mon Jul 27 21:31:26 2009 Subject: [GRASS-stats] spgrass6 fails to build under R 2.9.1 and Ubuntu Jaunty 64-bit Message-ID: <1248744689.5117.5.camel@vertical> Hi "spgrass6" experts! I am trying to get spgrass6 to work under R 2.9.1 but it fails (to compile? -- code is below). Did anybody had this issue recently? Is it a bug? Thanks, Nikos --- install.packages("spgrass6", dependencies=TRUE) Warning in install.packages("spgrass6", dependencies = TRUE) : argument 'lib' is missing: using '/usr/local/lib/R/site-library' trying URL 'http://cran.rakanu.com/src/contrib/spgrass6_0.6-6.tar.gz' Content type 'application/x-gzip' length 332298 bytes (324 Kb) opened URL ================================================== downloaded 324 Kb * Installing *source* package ?spgrass6? ... ** R ** inst ** preparing package for lazy loading Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11 Path to GDAL shared files: /usr/local/share/gdal Loaded PROJ.4 runtime: Rel. 4.6.0, 21 Dec 2007 Path to PROJ.4 shared files: (autodetected) ** help *** installing help indices >>> Building/Updating help pages for package 'spgrass6' Formats: text html latex example execGRASS text html latex example gmeta6 text html latex example initGRASS text html latex example readRAST6 text html latex example readVECT6 text html latex example spgrass6 text html latex example ** building package indices ... * DONE (spgrass6) *** glibc detected *** /usr/lib64/R/bin/exec/R: double free or corruption (fasttop): 0x0000000003112780 *** ======= Backtrace: ========= /lib/libc.so.6[0x7f6a3cbe7cb8] /lib/libc.so.6(cfree+0x76)[0x7f6a3cbea276] /usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f6a38afe50d] /lib/libc.so.6(exit+0x9d)[0x7f6a3cba66ed] /usr/lib64/R/lib/libR.so[0x7f6a3d0bfae8] /usr/lib64/R/lib/libR.so(run_Rmainloop+0x55)[0x7f6a3cfedfa5] /usr/lib64/R/bin/exec/R(main+0x1b)[0x40098b] /lib/libc.so.6(__libc_start_main+0xe6)[0x7f6a3cb8e5a6] /usr/lib64/R/bin/exec/R[0x400879] ======= Memory map: ======== 00400000-00401000 r-xp 00000000 08:03 145540 /usr/lib/R/bin/exec/R 00600000-00601000 r--p 00000000 08:03 145540 /usr/lib/R/bin/exec/R 00601000-00602000 rw-p 00001000 08:03 145540 /usr/lib/R/bin/exec/R 01bbd000-03de5000 rw-p 01bbd000 00:00 0 [heap] 7f6a2c000000-7f6a2c021000 rw-p 7f6a2c000000 00:00 0 7f6a2c021000-7f6a30000000 ---p 7f6a2c021000 00:00 0 7f6a31f15000-7f6a32068000 r-xp 00000000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a32068000-7f6a32267000 ---p 00153000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a32267000-7f6a3226f000 r--p 00152000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a3226f000-7f6a32271000 rw-p 0015a000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f6a32271000-7f6a32272000 rw-p 7f6a32271000 00:00 0 7f6a32272000-7f6a3228d000 r-xp 00000000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3228d000-7f6a3248d000 ---p 0001b000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3248d000-7f6a3248e000 r--p 0001b000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3248e000-7f6a3248f000 rw-p 0001c000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f6a3248f000-7f6a3249a000 r-xp 00000000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3249a000-7f6a3269a000 ---p 0000b000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3269a000-7f6a3269b000 r--p 0000b000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3269b000-7f6a3269c000 rw-p 0000c000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f6a3269c000-7f6a32752000 r-xp 00000000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32752000-7f6a32951000 ---p 000b6000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32951000-7f6a32957000 r--p 000b5000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32957000-7f6a32958000 rw-p 000bb000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f6a32958000-7f6a32959000 r-xp 00000000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32959000-7f6a32b59000 ---p 00001000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32b59000-7f6a32b5a000 r--p 00001000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32b5a000-7f6a32b5b000 rw-p 00002000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f6a32b5b000-7f6a32b61000 r-xp 00000000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32b61000-7f6a32d60000 ---p 00006000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32d60000-7f6a32d61000 r--p 00005000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32d61000-7f6a32d62000 rw-p 00006000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f6a32d62000-7f6a32d79000 r-xp 00000000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32d79000-7f6a32f78000 ---p 00017000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32f78000-7f6a32f79000 r--p 00016000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32f79000-7f6a32f7a000 rw-p 00017000 08:03 269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so 7f6a32f7a000-7f6a32f9a000 r-xp 00000000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a32f9a000-7f6a33199000 ---p 00020000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a33199000-7f6a3319a000 r--p 0001f000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a3319a000-7f6a3319b000 rw-p 00020000 08:03 269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so 7f6a3319b000-7f6a331a6000 r-xp 00000000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a331a6000-7f6a333a5000 ---p 0000b000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a333a5000-7f6a333a6000 r--p 0000a000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a333a6000-7f6a333a7000 rw-p 0000b000 08:03 269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so 7f6a333a7000-7f6a333ba000 r-xp 00000000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a333ba000-7f6a335b9000 ---p 00013000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a335b9000-7f6a335ba000 r--p 00012000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a335ba000-7f6a335bb000 rw-p 00013000 08:03 269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so 7f6a335bb000-7f6a33604000 r-xp 00000000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33604000-7f6a33803000 ---p 00049000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33803000-7f6a33804000 r--p 00048000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33804000-7f6a33806000 rw-p 00049000 08:03 269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so 7f6a33806000-7f6a33807000 rw-p 7f6a33806000 00:00 0 7f6a33807000-7f6a33810000 r-xp 00000000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33810000-7f6a33a10000 ---p 00009000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33a10000-7f6a33a11000 r--p 00009000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33a11000-7f6a33a12000 rw-p 0000a000 08:03 269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so 7f6a33a12000-7f6a33a1b000 r-xp 00000000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33a1b000-7f6a33c1a000 ---p 00009000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33c1a000-7f6a33c1b000 r--p 00008000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33c1b000-7f6a33c1c000 rw-p 00009000 08:03 269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so 7f6a33c1c000-7f6a33c82000 r-xp 00000000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33c82000-7f6a33e82000 ---p 00066000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33e82000-7f6a33e83000 r--p 00066000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33e83000-7f6a33e85000 rw-p 00067000 08:03 269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so 7f6a33e85000-7f6a33e8b000 rw-p 7f6a33e85000 00:00 0 7f6a33e8b000-7f6a33e93000 r-xp 00000000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a33e93000-7f6a34092000 ---p 00008000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a34092000-7f6a34093000 r--p 00007000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a34093000-7f6a34094000 rw-p 00008000 08:03 269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so 7f6a34094000-7f6a34099000 r-xp 00000000 08:03 269574 Aborted The downloaded packages are in ?/tmp/RtmpMaCWFV/downloaded_packages? Warning message: In install.packages("spgrass6", dependencies = TRUE) : installation of package 'spgrass6' had non-zero exit status From nikos.alexandris at felis.uni-freiburg.de Mon Jul 27 21:58:15 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Mon Jul 27 21:58:12 2009 Subject: [GRASS-stats] spgrass6 fails to build under R 2.9.1 and Ubuntu Jaunty 64-bit In-Reply-To: <1248744689.5117.5.camel@vertical> References: <1248744689.5117.5.camel@vertical> Message-ID: <1248746295.11097.1.camel@vertical> Nikos Alexandris wrote: > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > compile? -- code is below). OK, here is some (hopefully useful) info: --%<--- root@vertical:/geo/osgeo/src/spgrass6# R -d gdb GNU gdb 6.8-debian Copyright (C) 2008 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-linux-gnu"... (gdb) run Starting program: /usr/lib/R/bin/exec/R R version 2.9.1 (2009-06-26) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > install.packages ( "spgrass6" , dependencies = TRUE ) Warning in install.packages("spgrass6", dependencies = TRUE) : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- [Thread debugging using libthread_db enabled] Error while reading shared library symbols: Cannot find new threads: generic error Cannot find new threads: generic error --%<--- Nikos From nikos.alexandris at felis.uni-freiburg.de Mon Jul 27 22:05:36 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Mon Jul 27 22:05:33 2009 Subject: [GRASS-stats] spgrass6 fails to build under R 2.9.1 and Ubuntu Jaunty 64-bit In-Reply-To: <1248746295.11097.1.camel@vertical> References: <1248744689.5117.5.camel@vertical> <1248746295.11097.1.camel@vertical> Message-ID: <1248746736.11713.3.camel@vertical> Nikos Alexandris wrote: > > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > > compile? -- code is below). And for those who "know" here is the full backtrace :-P --%<-----%<-----%<-----%<-----%<-----%<-----%<--- (gdb) bt full #0 dl_open_worker (a=) at dl-open.c:369 args = (struct dl_open_args *) 0x7fff9bb05990 file = 0x2d
mode = -2147483646 new = (struct link_map *) 0x9fc660 lazy = 0 i = 45 any_tls = call_map = (struct link_map *) 0x7fbc93b0d740 r = l = __PRETTY_FUNCTION__ = "dl_open_worker" #1 0x00007fbc938fe8c6 in _dl_catch_error (objname=0x7fff9bb059e0, errstring=0x7fff9bb059d8, mallocedp=0x7fff9bb059ef, operate=0x7fbc93903370 , args=0x7fff9bb05990) at dl-error.c:178 errcode = old = (struct catch * volatile) 0x7fff9bb05a90 c = {objname = 0x7fff9bb05958 "?,F\223?\177", errstring = 0x0, malloced = 192, env = {{__jmpbuf = {-2, 817847137620482921, 2147483650, 140735805414464, 140447900891435, 1, 817847137555471209, 855547435465202537}, __mask_was_saved = -1824921504, __saved_mask = {__val = {140735805413696, 9913992, 11612232, 15010776, 11612232, 11637960, 140447906201008, 140447901431166, 140735805414112, 11637960, 11612232, 140447901771968, 15010776, 1, 1, 140447901428938}}}}} catchp = (struct catch ** const) 0x7fbc93b10b38 #2 0x00007fbc93902dbb in _dl_open (file=0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode=-2147483646, caller_dlopen=0x7fbc933df92b, nsid=-2, argc=1, argv=0x7fff9bb100f8, env=0x96fd60) at dl-open.c:596 args = {file = 0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode = -2147483646, caller_dlopen = 0x7fbc933df92b, caller_dl_open = 0x7fbc91da9f5b, map = 0x9fc660, nsid = 0, argc = 1, argv = 0x7fff9bb100f8, env = 0x96fd60} objname = 0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so" errstring = malloced = errcode = __PRETTY_FUNCTION__ = "_dl_open" #3 0x00007fbc91da9f5b in dlopen_doit (a=) at dlopen.c:67 args = (struct dlopen_args *) 0x7fff9bb05bb0 #4 0x00007fbc938fe8c6 in _dl_catch_error (objname=0x7fbc91fac0d0, errstring=0x7fbc91fac0d8, mallocedp=0x7fbc91fac0c8, operate=0x7fbc91da9ef0 , args=0x7fff9bb05bb0) at dl-error.c:178 errcode = old = (struct catch * volatile) 0x0 c = {objname = 0x19bb05ac0
, errstring = 0x0, malloced = false, env = {{__jmpbuf = { 140447879708864, 817847137601608553, 140447877603056, 1, 25027232, 140447906201008, 817847137628871529, 855547435465202537}, __mask_was_saved = -1823128519, __saved_mask = {__val = {140733193388032, 140447903265992, 140735805414464, 1, 1, 25027232, 140447906201008, 140447898080891, 206158430256, 140735805414464, 140735805414224, 11637960, 140447906200032, 140447901125965, 140735805414368, 140447902416690}}}}} catchp = (struct catch ** const) 0x7fbc93b10b38 #5 0x00007fbc91daa2cc in _dlerror_run (operate=0x7fbc91da9ef0 , args=0x7fff9bb05bb0) at dlerror.c:164 result = (struct dl_action_result *) 0x7fbc91fac0c0 #6 0x00007fbc91da9ec1 in __dlopen (file=, mode=) at dlopen.c:88 args = {file = 0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode = 2, new = 0x1, caller = 0x7fbc933df92b} #7 0x00007fbc933df92b in AddDLL (path=0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", asLocal=1, now=1, DLLsearchpath=0x7fbc935e92bd "") at Rdynload.c:532 handle = info = #8 0x00007fbc933dfae7 in R_moduleCdynload (module=0x7fbc936234c8 "R_X11", local=1, now=1) at Rdynload.c:925 dllpath = "/usr/lib64/R/modules//R_X11.so\000@\000\000\000\000\000\000 \000\000@^?\233?\177\000\000?&_\223?\177\000\000?U\231\000\000\000\000 \000\200\f?\000\000\000\000\000\000\000\000\000\001\000\000\000\202\000 \000\000\000\000\000\000X/?\000\000\000\000\000X/?\000\000\000\000 \000?/?\000\000\000\000\000\0300?\000\000\000\000\000|?S\223?\177\000 \000\230\r?\000\000\000\000\000\002\000\000\000\000\000\000\000\230Q\231 \000\000\000\000\000`\r?\000\000\000\000\000\210F\227\000\000\000\000 \000\210F\227\000\000\000\000\000\210F\227\000\000\000\000\000\210F\227 \000\000\000\000\000\210F\227\000\000\000\000\000"... p = res = #9 0x00007fbc9358636a in R_access_X11 () at X11.c:55 No locals. #10 0x00007fbc934e41f5 in do_capabilitiesX11 (call=, op=, args=0x7fff9bb05990, rho=) at platform.c:1709 No locals. #11 0x00007fbc934c5e99 in do_internal (call=, op=, args=0x974688, env=0xfd7380) at names.c:1149 s = (SEXP) 0x17de2a0 fun = (SEXP) 0x9aae58 ans = save = 116 flag = 0 vmax = (void *) 0x0 #12 0x00007fbc93486f24 in Rf_eval (e=0x17dd3a8, rho=0xfd7380) at eval.c:461 save = 115 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 54 evalcount = 152 #13 0x00007fbc934872bf in forcePromise (e=0xe4a4f8) at eval.c:332 prstack = {promise = 0xe4a4f8, next = 0x7fff9bb072c0} val = #14 0x00007fbc93486d1d in Rf_eval (e=0xe4a4f8, rho=0xe4a338) at eval.c:442 op = tmp = (SEXP) 0x974650 depthsave = 53 evalcount = 152 #15 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0xe4a338) at eval.c:430 op = tmp = (SEXP) 0xe4a4f8 depthsave = 52 evalcount = 152 #16 0x00007fbc934872bf in forcePromise (e=0xf97060) at eval.c:332 prstack = {promise = 0xf97060, next = 0x7fff9bb076b0} val = #17 0x00007fbc93486d1d in Rf_eval (e=0xf97060, rho=0xf96dc0) at eval.c:442 op = tmp = (SEXP) 0x974650 depthsave = 51 evalcount = 152 #18 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0xf96dc0) at eval.c:430 op = tmp = (SEXP) 0xf97060 depthsave = 50 evalcount = 152 #19 0x00007fbc934872bf in forcePromise (e=0xf96b58) at eval.c:332 prstack = {promise = 0xf96b58, next = 0x7fff9bb07d10} val = #20 0x00007fbc93486d1d in Rf_eval (e=0xf96b58, rho=0x10e54c0) at eval.c:442 op = tmp = (SEXP) 0x974650 depthsave = 49 evalcount = 152 #21 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0x10e54c0) at eval.c:430 op = tmp = (SEXP) 0xf96b58 depthsave = 48 evalcount = 152 #22 0x00007fbc93487e55 in Rf_evalListKeepMissing (el=0xa9d918, rho=0x10e54c0) at eval.c:1607 h = (SEXP) 0x10e54c0 tail = (SEXP) 0x11ba098 #23 0x00007fbc93487ff3 in do_return (call=0xa9c9e8, op=, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:1208 a = v = vals = nv = #24 0x00007fbc93486f24 in Rf_eval (e=0xa9c9e8, rho=0x10e54c0) at eval.c:461 save = 109 flag = 0 vmax = (void *) 0x0 op = tmp = depthsave = 47 evalcount = 152 #25 0x00007fbc934872bf in forcePromise (e=0x10e53e0) at eval.c:332 prstack = {promise = 0x10e53e0, next = 0x7fff9bb0cf00} val = #26 0x00007fbc93486d1d in Rf_eval (e=0x10e53e0, rho=0x10e5140) at eval.c:442 op = tmp = (SEXP) 0x974650 depthsave = 46 evalcount = 152 #27 0x00007fbc93487103 in Rf_eval (e=0x9e2dc8, rho=0x10e5140) at eval.c:430 op = tmp = (SEXP) 0x10e53e0 depthsave = 45 evalcount = 152 #28 0x00007fbc934893fc in do_begin (call=0xa9ce80, op=0x993420, args=0xa9cba8, rho=0x10e5140) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #29 0x00007fbc93486f24 in Rf_eval (e=0xa9ce80, rho=0x10e5140) at eval.c:461 save = 106 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 44 evalcount = 152 #30 0x00007fbc9348aaab in Rf_applyClosure (call=0xa9ca58, op=0x10e5488, arglist=0x10e53a8, rho=0x10e54c0, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa9ce80 formals = (SEXP) 0x10e5178 actuals = (SEXP) 0x10e5178 savedrho = newrho = (volatile SEXP) 0x10e5140 f = (SEXP) 0x10e5178 a = (SEXP) 0x10e5178 tmp = (SEXP) 0x7fff9bb08340 cntxt = {nextcontext = 0x7fff9bb08b10, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805424448, -817782803990029463, 17715576, 140447906200080, 17716136, 10184792, 817847134627847017, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447902528555, 131840, 184693507720, 14992280, 11137112, 9913992, 9913992, 21452480, 140447901582106, 0, 10048984, 11162312, 14992224, 11137056, 11143960, 10373112}}}}, cstacktop = 105, evaldepth = 44, promargs = 0x10e53a8, callfun = 0x10e5488, sysparent = 0x10e54c0, call = 0xa9ca58, cloenv = 0x10e5140, conexit = 0x974688, cend = 0, cenddata = 0x17ab490, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #31 0x00007fbc93486e73 in Rf_eval (e=0xa9ca58, rho=0x10e54c0) at eval.c:505 op = tmp = (SEXP) 0x10e53a8 depthsave = 43 evalcount = 152 #32 0x00007fbc93489370 in do_set (call=0xa9cb00, op=0x993618, args=0xa9cac8, rho=0x10e54c0) at eval.c:1446 s = #33 0x00007fbc93486f24 in Rf_eval (e=0xa9cb00, rho=0x10e54c0) at eval.c:461 save = 100 flag = 1 vmax = (void *) 0x0 op = tmp = depthsave = 42 evalcount = 152 #34 0x00007fbc934893fc in do_begin (call=0xa9d120, op=0x993420, args=0xa9cb38, rho=0x10e54c0) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #35 0x00007fbc93486f24 in Rf_eval (e=0xa9d120, rho=0x10e54c0) at eval.c:461 save = 98 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 41 evalcount = 152 #36 0x00007fbc9348aaab in Rf_applyClosure (call=0xa9c6c0, op=0xe4a290, arglist=0xf96b20, rho=0xf96dc0, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa9d120 formals = (SEXP) 0x10e54f8 actuals = (SEXP) 0x10e54f8 savedrho = newrho = (volatile SEXP) 0x10e54c0 f = (SEXP) 0x10e54f8 a = (SEXP) 0x10e54f8 tmp = (SEXP) 0x7fff9bb08b10 cntxt = {nextcontext = 0x7fff9bb09490, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805426448, -817782803805480087, 17716472, 140447906200080, 16345888, 10184792, 817847134961294185, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140735805426640, 11146392, 11146392, 18755608, 18755608, 11146392, 11125152, 16346560, 0, 11125152, 140447906200080, 140447906200032, 140447901504469, 11125152, 9913992, 140447906200440}}}}, cstacktop = 97, evaldepth = 41, promargs = 0xf96b20, callfun = 0xe4a290, sysparent = 0xf96dc0, call = 0xa9c6c0, cloenv = 0x10e54c0, conexit = 0x974688, cend = 0, cenddata = 0x9954e0, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #37 0x00007fbc93486e73 in Rf_eval (e=0xa9c6c0, rho=0xf96dc0) at eval.c:505 op = tmp = (SEXP) 0xf96b20 depthsave = 40 evalcount = 152 #38 0x00007fbc93486f24 in Rf_eval (e=0xa9c810, rho=0xf96dc0) at eval.c:461 save = 92 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 39 evalcount = 152 #39 0x00007fbc93486f24 in Rf_eval (e=0xa9c050, rho=0xf96dc0) at eval.c:461 save = 90 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 38 evalcount = 152 #40 0x00007fbc934893fc in do_begin (call=0xa998b8, op=0x993420, args=0xa9c088, rho=0xf96dc0) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #41 0x00007fbc93486f24 in Rf_eval (e=0xa998b8, rho=0xf96dc0) at eval.c:461 save = 88 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 37 evalcount = 152 #42 0x00007fbc9348aaab in Rf_applyClosure (call=0xa9e358, op=0xe4a300, arglist=0xf97028, rho=0xe4a338, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa998b8 formals = (SEXP) 0xf96df8 actuals = (SEXP) 0xf96df8 savedrho = newrho = (volatile SEXP) 0xf96dc0 f = (SEXP) 0xf96df8 a = (SEXP) 0xf96df8 tmp = (SEXP) 0x7fff9bb09490 cntxt = {nextcontext = 0x7fff9bb09a50, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805428880, -817784652017149079, 16346616, 140447906200080, 16347176, 10184792, 817847135280061289, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {9913992, 140735805429008, 11146440, 4304881288, 11146444, 34359738371, 140447902558688, 140447902558816, 28636376, 0, 11151664, 4, 0, 18018280, 1, 10059352}}}}, cstacktop = 87, evaldepth = 37, promargs = 0xf97028, callfun = 0xe4a300, sysparent = 0xe4a338, call = 0xa9e358, cloenv = 0xf96dc0, conexit = 0x974688, cend = 0, cenddata = 0xaa29d8, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #43 0x00007fbc93486e73 in Rf_eval (e=0xa9e358, rho=0xe4a338) at eval.c:505 op = tmp = (SEXP) 0xf97028 depthsave = 36 evalcount = 152 #44 0x00007fbc934893fc in do_begin (call=0xa99ca8, op=0x993420, args=0xa9e390, rho=0xe4a338) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #45 0x00007fbc93486f24 in Rf_eval (e=0xa99ca8, rho=0xe4a338) at eval.c:461 save = 82 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 35 evalcount = 152 #46 0x00007fbc9348aaab in Rf_applyClosure (call=0x17dd418, op=0xa99df8, arglist=0xe4a4c0, rho=0xfd7380, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa99ca8 formals = (SEXP) 0xe4a3a8 actuals = (SEXP) 0xe4a3a8 savedrho = newrho = (volatile SEXP) 0xe4a338 f = (SEXP) 0xe4a3a8 a = (SEXP) 0xe4a3a8 tmp = (SEXP) 0x7fff9bb09a50 cntxt = {nextcontext = 0x7fff9bb0a7f0, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805430352, -817784817715225751, 14984104, 140447906200080, 14984384, 10184792, 817847135472999273, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447906200528, 1024, 140447901109400, 1, 1, 9913992, 9913992, 11145768, 10108392, 16610176, 25024800, 11145912, 140447906200032, 27212608, 25024856, 16610176}}}}, cstacktop = 81, evaldepth = 35, promargs = 0xe4a4c0, callfun = 0xa99df8, sysparent = 0xfd7380, call = 0x17dd418, cloenv = 0xe4a338, conexit = 0x974688, cend = 0, cenddata = 0xabca98, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #47 0x00007fbc93486e73 in Rf_eval (e=0x17dd418, rho=0xfd7380) at eval.c:505 op = tmp = (SEXP) 0xe4a4c0 depthsave = 34 evalcount = 152 #48 0x00007fbc93488b38 in applydefine (call=0x17dd568, op=0x993618, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:1335 expr = (SEXP) 0x17dd4f8 lhs = rhs = tmp = tmp2 = tmploc = buf = "PF\227\000\000\000\000\000xg\233\000\000\000\000\000?5\231\000 \000\000\000\000\000?\216\223?\177\000" cntxt = {nextcontext = 0x0, callflag = 11146200, cjmpbuf = {{__jmpbuf = {11146152, 11146104, 11146200, 140447902523318, 9913320, 10212064, 40, 10213952}, __mask_was_saved = -1819345968, __saved_mask = {__val = {140447906200752, 25025024, 720716388281809392, 11145720, 4306112968, 7, 146028888143, 27211936, 11258688, 16610176, 25024464, 27211656, 9913992, 0, 25021920, 0}}}}, cstacktop = 0, evaldepth = 0, promargs = 0x974688, callfun = 0x974688, sysparent = 0x7fff9bb0cf00, call = 0x9746d0, cloenv = 0x974688, conexit = 0x19f3788, cend = 0x19f3910, cenddata = 0x19f38a0, vmax = 0x974688, intsusp = 25024464, handlerstack = 0xfd7380, restartstack = 0xabcb40, prstack = 0x19f38a0, nodestack = 0x7fbc93486da7} #49 0x00007fbc93486f24 in Rf_eval (e=0x17dd568, rho=0xfd7380) at eval.c:461 save = 76 flag = 1 vmax = (void *) 0x0 op = tmp = depthsave = 33 evalcount = 152 #50 0x00007fbc934893fc in do_begin (call=0x17dd5d8, op=0x993420, args=0x17dd5a0, rho=0xfd7380) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #51 0x00007fbc93486f24 in Rf_eval (e=0x17dd5d8, rho=0xfd7380) at eval.c:461 save = 74 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 32 evalcount = 152 #52 0x00007fbc93486f24 in Rf_eval (e=0x17dd8b0, rho=0xfd7380) at eval.c:461 save = 72 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 31 evalcount = 152 #53 0x00007fbc934893fc in do_begin (call=0x17da770, op=0x993420, args=0x17dd8e8, rho=0xfd7380) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #54 0x00007fbc93486f24 in Rf_eval (e=0x17da770, rho=0xfd7380) at eval.c:461 save = 70 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 30 evalcount = 152 #55 0x00007fbc9348aaab in Rf_applyClosure (call=0x1456a30, op=0x17da7e0, arglist=0xfd73f0, rho=0xab5b78, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0x17da770 formals = (SEXP) 0xfd73b8 actuals = (SEXP) 0xfd73b8 savedrho = newrho = (volatile SEXP) 0xfd7380 f = (SEXP) 0xfd73b8 a = (SEXP) 0xfd73b8 tmp = (SEXP) 0x7fff9bb0a7f0 cntxt = {nextcontext = 0x7fff9bb0ba00, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805433840, -817784617464472727, 16610232, 140447906200080, 16610288, 10184792, 817847133715585897, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447905541856, 140447906200440, 124554051585, 60, 0, 140733193388033, 140447900624992, 1026, 140735805434084, 140735805434080, 140445430579200, 10104536, 9913992, 11673880, 11673992, 9913992}}}}, cstacktop = 69, evaldepth = 30, promargs = 0xfd73f0, callfun = 0x17da7e0, sysparent = 0xab5b78, call = 0x1456a30, cloenv = 0xfd7380, conexit = 0x974688, cend = 0, cenddata = 0xe6af78, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #56 0x00007fbc93486e73 in Rf_eval (e=0x1456a30, rho=0xab5b78) at eval.c:505 op = tmp = (SEXP) 0xfd73f0 depthsave = 29 evalcount = 152 #57 0x00007fbc934aeb55 in do_logic2 (call=0xe6b058, op=0x994ef8, args=, env=0xab5b78) at logic.c:232 s1 = s2 = (SEXP) 0x1456a30 x1 = 1 x2 = ans = (SEXP) 0xaba6e8 #58 0x00007fbc93486f24 in Rf_eval (e=0xe6b058, rho=0xab5b78) at eval.c:461 save = 63 flag = 0 vmax = (void *) 0x0 op = tmp = depthsave = 28 evalcount = 152 #59 0x00007fbc934ae8cd in do_logic2 (call=0xe6b0c8, op=0x994ef8, args=0xe6b090, env=0xab5b78) at logic.c:214 s1 = (SEXP) 0xe6b058 s2 = (SEXP) 0x1456988 x1 = x2 = ans = #60 0x00007fbc93486f24 in Rf_eval (e=0xe6b0c8, rho=0xab5b78) at eval.c:461 save = 60 flag = 0 vmax = (void *) 0x0 op = tmp = depthsave = 27 evalcount = 152 #61 0x00007fbc93489f24 in do_if (call=0xe6b138, op=, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:960 Cond = #62 0x00007fbc93486f24 in Rf_eval (e=0xe6b138, rho=0xab5b78) at eval.c:461 save = 58 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 26 evalcount = 152 #63 0x00007fbc93486f24 in Rf_eval (e=0xd65dd8, rho=0xab5b78) at eval.c:461 save = 56 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 25 evalcount = 152 #64 0x00007fbc934893fc in do_begin (call=0xd65e48, op=0x993420, args=0xd65e10, rho=0xab5b78) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #65 0x00007fbc93486f24 in Rf_eval (e=0xd65e48, rho=0xab5b78) at eval.c:461 save = 54 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 24 evalcount = 152 #66 0x00007fbc93486f24 in Rf_eval (e=0xd65ef0, rho=0xab5b78) at eval.c:461 save = 52 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 23 evalcount = 152 #67 0x00007fbc934893fc in do_begin (call=0xd66158, op=0x993420, args=0xd65f28, rho=0xab5b78) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #68 0x00007fbc93486f24 in Rf_eval (e=0xd66158, rho=0xab5b78) at eval.c:461 save = 50 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 22 evalcount = 152 #69 0x00007fbc9348aaab in Rf_applyClosure (call=0xa2f590, op=0xc70db0, arglist=0xab5d38, rho=0xa29060, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xd66158 formals = (SEXP) 0xab5bb0 actuals = (SEXP) 0xab5bb0 savedrho = newrho = (volatile SEXP) 0xab5b78 f = (SEXP) 0xab5bb0 a = (SEXP) 0xab5bb0 tmp = (SEXP) 0x7fff9bb0ba00 cntxt = {nextcontext = 0x7fff9bb0c1d0, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805438464, -817784220984255639, 11230128, 140447906200080, 11230520, 10184792, 817847134317468521, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140447902417977, 140733193388032, 140445430579200, 42969831616, 786432, 6907017904, 3293522019091555860, 140735805439056, 140447906200032, 140447906200032, 12828792, 12828840, 1, 140447906200032, 140447901742436, 2}}}}, cstacktop = 49, evaldepth = 22, promargs = 0xab5d38, callfun = 0xc70db0, sysparent = 0xa29060, call = 0xa2f590, cloenv = 0xab5b78, conexit = 0x974688, cend = 0, cenddata = 0x974688, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #70 0x00007fbc93486e73 in Rf_eval (e=0xa2f590, rho=0xa29060) at eval.c:505 op = tmp = (SEXP) 0xab5d38 depthsave = 21 evalcount = 152 #71 0x00007fbc93489370 in do_set (call=0xa30060, op=0x993618, args=0xa2f280, rho=0xa29060) at eval.c:1446 s = #72 0x00007fbc93486f24 in Rf_eval (e=0xa30060, rho=0xa29060) at eval.c:461 save = 44 flag = 1 vmax = (void *) 0x0 op = tmp = depthsave = 20 evalcount = 152 #73 0x00007fbc934893fc in do_begin (call=0xa318d0, op=0x993420, args=0xa2fe68, rho=0xa29060) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #74 0x00007fbc93486f24 in Rf_eval (e=0xa318d0, rho=0xa29060) at eval.c:461 save = 42 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 19 evalcount = 152 #75 0x00007fbc9348aaab in Rf_applyClosure (call=0xa71878, op=0xa34750, arglist=0x974688, rho=0xa5e7b8, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa318d0 formals = (SEXP) 0xa28e68 actuals = (SEXP) 0xa28e68 savedrho = newrho = (volatile SEXP) 0xa29060 f = (SEXP) 0xa28e68 a = (SEXP) 0xa28e68 tmp = (SEXP) 0x7fff9bb0c1d0 cntxt = {nextcontext = 0x7fff9bb0cb80, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805440464, -817784283637720215, 10653288, 140447906200080, 9913992, 10184792, 817847132436323177, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {11061767098, 140735805440608, 140735805440608, 140735805441024, 81604378666, 10867280, 11258688, 10872760, 10959328, 10866360, 9913992, 0, 140447902417977, 0, 0, 42959586896}}}}, cstacktop = 41, evaldepth = 19, promargs = 0x974688, callfun = 0xa34750, sysparent = 0xa5e7b8, call = 0xa71878, cloenv = 0xa29060, conexit = 0x974688, cend = 0, cenddata = 0x9a62d0, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #76 0x00007fbc93486e73 in Rf_eval (e=0xa71878, rho=0xa5e7b8) at eval.c:505 op = tmp = (SEXP) 0x974688 depthsave = 18 evalcount = 152 #77 0x00007fbc934893fc in do_begin (call=0xa73568, op=0x993420, args=0xa72658, rho=0xa5e7b8) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #78 0x00007fbc93486f24 in Rf_eval (e=0xa73568, rho=0xa5e7b8) at eval.c:461 save = 36 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 17 evalcount = 152 #79 0x00007fbc93486f24 in Rf_eval (e=0xa74328, rho=0xa5e7b8) at eval.c:461 save = 34 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 16 evalcount = 152 #80 0x00007fbc934893fc in do_begin (call=0xa75078, op=0x993420, args=0xa74130, rho=0xa5e7b8) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #81 0x00007fbc93486f24 in Rf_eval (e=0xa75078, rho=0xa5e7b8) at eval.c:461 save = 32 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 15 evalcount = 152 #82 0x00007fbc9348aaab in Rf_applyClosure (call=0xcbd278, op=0xa78aa8, arglist=0xa5ee98, rho=0xbded98, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xa75078 formals = (SEXP) 0xa5e5c0 actuals = (SEXP) 0xa5e5c0 savedrho = newrho = (volatile SEXP) 0xa5e7b8 f = (SEXP) 0xa5e5c0 a = (SEXP) 0xa5e5c0 tmp = (SEXP) 0x7fff9bb0cb80 cntxt = {nextcontext = 0x7fff9bb0dfc0, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805442944, -817784278624478359, 10872256, 140447906200080, 10874520, 10184792, 817847132757187433, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {17628959877169699689, 11301424, 140447906200080, 11305088, 10184792, 817847132765576041, 855545745441971049, 0, 14052248, 140447906200032, 140447901431166, 11334304, 60129542179, 11232592, 11283976, 12447128}}}}, cstacktop = 31, evaldepth = 15, promargs = 0xa5ee98, callfun = 0xa78aa8, sysparent = 0xbded98, call = 0xcbd278, cloenv = 0xa5e7b8, conexit = 0x974688, cend = 0, cenddata = 0x974688, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x7fff9bb0cf00, nodestack = 0x9746d0} #83 0x00007fbc93486e73 in Rf_eval (e=0xcbd278, rho=0xbded98) at eval.c:505 op = tmp = (SEXP) 0xa5ee98 depthsave = 14 evalcount = 152 #84 0x00007fbc934872bf in forcePromise (e=0xbdee08) at eval.c:332 prstack = {promise = 0xbdee08, next = 0x7fff9bb0d2f0} val = #85 0x00007fbc93486d1d in Rf_eval (e=0xbdee08, rho=0xbded98) at eval.c:442 op = tmp = (SEXP) 0x974650 depthsave = 13 evalcount = 152 #86 0x00007fbc93487103 in Rf_eval (e=0xcbd208, rho=0xbded98) at eval.c:430 op = tmp = (SEXP) 0xbdee08 depthsave = 12 evalcount = 152 #87 0x00007fbc934872bf in forcePromise (e=0xa7b500) at eval.c:332 prstack = {promise = 0xa7b500, next = 0x0} val = #88 0x00007fbc93486d1d in Rf_eval (e=0xa7b500, rho=0xa7aa88) at eval.c:442 op = tmp = (SEXP) 0x974650 depthsave = 11 evalcount = 152 #89 0x00007fbc93487103 in Rf_eval (e=0x9dc068, rho=0xa7aa88) at eval.c:430 op = tmp = (SEXP) 0xa7b500 depthsave = 10 evalcount = 152 #90 0x00007fbc9348820d in Rf_evalList (el=0xc3a828, rho=0xa7aa88, op=0x9a3a50) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa78d98 n = 1 #91 0x00007fbc93487046 in Rf_eval (e=0xc3a860, rho=0xa7aa88) at eval.c:480 save = 24 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0xa7d240, callflag = -1823963554, cjmpbuf = {{__jmpbuf = {11152224, 10047392, 11308328, 140735805446536, 140447903081565, 10039736, 11981872, 4294967296}, __mask_was_saved = -1819346464, __saved_mask = { __val = {140447901575999, 11309112, 140447906200080, 11308552, 10184792, 817847133174520681, 41174063977, 140733193388032, 1, 11307320, 140447901011367, 10215960, 140447902551466, 140735805446288, 1, 9913992}}}}, cstacktop = -1824513432, evaldepth = 32700, promargs = 0x0, callfun = 0x0, sysparent = 0x2000, call = 0x973ff8, cloenv = 0xa7c528, conexit = 0xc87048, cend = 0xffffffff, cenddata = 0xb6d430, vmax = 0xc87048, intsusp = -1824562375, handlerstack = 0x58, restartstack = 0x1, prstack = 0xa7c528, nodestack = 0xb6d430} op = (SEXP) 0x9a3a50 tmp = depthsave = 9 evalcount = 152 #92 0x00007fbc9348820d in Rf_evalList (el=0xc3a898, rho=0xa7aa88, op=0x994fa0) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa79b08 n = 1 #93 0x00007fbc93487046 in Rf_eval (e=0xc3a8d0, rho=0xa7aa88) at eval.c:480 save = 22 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0x7fbc938efb78, callflag = 0, cjmpbuf = {{__jmpbuf = {19, 0, 9913936, 140447901576477, 0, 0, 22, 11250536}, __mask_was_saved = 11250536, __saved_mask = {__val = {34381806840, 22068528, 140447902328700, 140447906189152, 13317832, 10047896, 11258520, 9913992, 9913992, 9913992, 9913992, 9913992, 34359738390, 11301064, 11629808, 12447128}}}}, cstacktop = 13126976, evaldepth = 0, promargs = 0xac6390, callfun = 0x974688, sysparent = 0x0, call = 0x974688, cloenv = 0xc86fe8, conexit = 0x14820b0, cend = 0xc86fe8, cenddata = 0xca7a48, vmax = 0x974688, intsusp = -1819346416, handlerstack = 0xcbd160, restartstack = 0xb6d468, prstack = 0x974688, nodestack = 0x7fbc934b40f8} op = (SEXP) 0x994fa0 tmp = depthsave = 8 evalcount = 152 #94 0x00007fbc93489f24 in do_if (call=0xc3a940, op=, args=0x7fff9bb05990, rho=0x7fbc93b10c80) at eval.c:960 Cond = #95 0x00007fbc93486f24 in Rf_eval (e=0xc3a940, rho=0xa7aa88) at eval.c:461 save = 20 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 7 evalcount = 152 #96 0x00007fbc934893fc in do_begin (call=0xc3a9b0, op=0x993420, args=0xc3a978, rho=0xa7aa88) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #97 0x00007fbc93486f24 in Rf_eval (e=0xc3a9b0, rho=0xa7aa88) at eval.c:461 save = 18 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 6 evalcount = 152 #98 0x00007fbc9348aaab in Rf_applyClosure (call=0xc52688, op=0xc3ac50, arglist=0xa7b308, rho=0xbded98, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xc3a9b0 formals = (SEXP) 0xa7a890 actuals = (SEXP) 0xa7a890 savedrho = newrho = (volatile SEXP) 0xa7aa88 f = (SEXP) 0xa7a890 a = (SEXP) 0xa7a890 tmp = (SEXP) 0x7fff9bb0dfc0 cntxt = {nextcontext = 0x7fff9bb0ec10, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805448128, -817784259139839127, 10987664, 140447906200080, 10990344, 10184792, 817847133436664681, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {140735805448320, 13135896, 13135896, 11287144, 11287144, 13135896, 140447901592175, 11399192, 0, 12447128, 11399192, 13119664, 11398968, 140735805451280, 140445430579212, 140735805448320}}}}, cstacktop = 17, evaldepth = 6, promargs = 0xa7b308, callfun = 0xc3ac50, sysparent = 0xbded98, call = 0xc52688, cloenv = 0xa7aa88, conexit = 0x974688, cend = 0, cenddata = 0x7fbc934e0d98, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x0, nodestack = 0x9746d0} #99 0x00007fbc93486e73 in Rf_eval (e=0xc52688, rho=0xbded98) at eval.c:505 op = tmp = (SEXP) 0xa7b308 depthsave = 5 evalcount = 152 #100 0x00007fbc9348820d in Rf_evalList (el=0xc52650, rho=0xbded98, op=0x995878) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa7bcf8 n = 1 #101 0x00007fbc93487046 in Rf_eval (e=0xc52618, rho=0xbded98) at eval.c:480 save = 12 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0x974650, callflag = -1823970019, cjmpbuf = {{__jmpbuf = {0, 140447905541856, 13119496, 12447128, 0, 19650866599, 12, 0}, __mask_was_saved = -1682904048, __saved_mask = {__val = {140447905541856, 140447906200440, 17699986281, 4294967308, 0, 11300168, 10184792, 817847131507284841, 855545745441971049, 0, 11681872, 4294967293, 140447902523318, 42949672960, 786432, 4308339656}}}}, cstacktop = -1746852332, evaldepth = 766832851, promargs = 0x7fbc938efbd0, callfun = 0x1, sysparent = 0x1, call = 0x1, cloenv = 0xc87168, conexit = 0x0, cend = 0x1, cenddata = 0x7fbc934af564, vmax = 0xc88910, intsusp = -1819346464, handlerstack = 0xd938ef9e0, restartstack = 0x9950f0, prstack = 0xc83430, nodestack = 0x974688} op = (SEXP) 0x995878 tmp = depthsave = 4 evalcount = 152 #102 0x00007fbc9348820d in Rf_evalList (el=0xc525e0, rho=0xbded98, op=0x995390) at eval.c:1539 h = (SEXP) 0x7fbc938efb78 tail = (SEXP) 0xa7bb70 n = 1 #103 0x00007fbc93487046 in Rf_eval (e=0xc525a8, rho=0xbded98) at eval.c:480 save = 10 flag = 0 vmax = (void *) 0x0 cntxt = {nextcontext = 0x7fbc938efb78, callflag = 9, cjmpbuf = {{__jmpbuf = {8589934602, 0, 211228896818, 9913544, 3293522019091555860, 2, 13353720, 2}, __mask_was_saved = -1682904928, __saved_mask = {__val = {2, 2, 140447902417977, 8589934592, 0, 2548114964, 1, 2, 3293522019091555860, 2, 13435792, 3293522019091555860, 6, 13353664, 6, 140735805450400}}}}, cstacktop = 6, evaldepth = 0, promargs = 0x6, callfun = 0x7fbc93554439, sysparent = 0x7fff00000000, call = 0x7fbc00000000, cloenv = 0x9bb0e7f0, conexit = 0x13b93486de3, cend = 0x2580, cenddata = 0x428, vmax = 0x7fbc933a2a00, intsusp = 128, handlerstack = 0x2db4f0d397e12614, restartstack = 0x403, prstack = 0xac52f0, nodestack = 0xbded98} op = (SEXP) 0x995390 tmp = depthsave = 3 evalcount = 152 #104 0x00007fbc93489370 in do_set (call=0xc53388, op=0x993618, args=0xc533c0, rho=0xbded98) at eval.c:1446 s = #105 0x00007fbc93486f24 in Rf_eval (e=0xc53388, rho=0xbded98) at eval.c:461 save = 8 flag = 1 vmax = (void *) 0x0 op = tmp = depthsave = 2 evalcount = 152 #106 0x00007fbc934893fc in do_begin (call=0xcbc2c0, op=0x993420, args=0xc53350, rho=0xbded98) at eval.c:1191 s = (SEXP) 0x7fbc93b10c80 #107 0x00007fbc93486f24 in Rf_eval (e=0xcbc2c0, rho=0xbded98) at eval.c:461 save = 6 flag = 2 vmax = (void *) 0x0 op = tmp = depthsave = 1 evalcount = 152 #108 0x00007fbc9348aaab in Rf_applyClosure (call=0xcbfc10, op=0xcbfdd0, arglist=0xbdfd78, rho=0x9b6820, suppliedenv=0x9b6858) at eval.c:667 body = (SEXP) 0xcbc2c0 formals = (SEXP) 0xbded60 actuals = (SEXP) 0xbded60 savedrho = newrho = (volatile SEXP) 0xbded98 f = (SEXP) 0xbded60 a = (SEXP) 0xbded60 tmp = (SEXP) 0x7fff9bb0ec10 cntxt = {nextcontext = 0x7fbc938efa20, callflag = 12, cjmpbuf = {{__jmpbuf = {140735805451280, -817784072210195607, 12447072, 140447906200080, 12451192, 10184792, 817847131706514281, 855545745441971049}, __mask_was_saved = 0, __saved_mask = {__val = {0, 0, 0, 0, 0, 0, 0, 9913992, 9913992, 13802832, 140447901484316, 1, 14, 875920184165, 9, 20441808}}}}, cstacktop = 5, evaldepth = 1, promargs = 0xbdfd78, callfun = 0xcbfdd0, sysparent = 0x9b6820, call = 0xcbfc10, cloenv = 0xbded98, conexit = 0x974688, cend = 0, cenddata = 0x7fbc933b6d24, vmax = 0x0, intsusp = 0, handlerstack = 0x974688, restartstack = 0x974688, prstack = 0x0, nodestack = 0x9746d0} #109 0x00007fbc93486e73 in Rf_eval (e=0xcbfc10, rho=0x9b6820) at eval.c:505 op = tmp = (SEXP) 0xbdfd78 depthsave = 0 evalcount = 152 #110 0x00007fbc934b2c9b in Rf_ReplIteration (rho=0x9b6820, savestack=, browselevel=0, state=0x7fff9bb0efc0) at main.c:257 c = 10 browsevalue = value = wasDisplayed = #111 0x00007fbc934b2f08 in R_ReplConsole (rho=0x9b6820, savestack=0, browselevel=0) at main.c:306 status = state = {status = PARSE_OK, prompt_type = 1, browselevel = 0, buf = "install.packages ( \"spgrass6\" , dependencies = TRUE )\n", '\0' , bufp = 0x7fff9bb0f002 ""} #112 0x00007fbc934b2fa0 in run_Rmainloop () at main.c:966 No locals. #113 0x000000000040098b in main (ac=, av=) at Rmain.c:33 No locals. #114 0x00007fbc930535a6 in __libc_start_main (main=0x400970
, argc=1, ubp_av=0x7fff9bb100f8, init=0x4009b0 <__libc_csu_init>, fini=, rtld_fini=, stack_end=0x7fff9bb100e8) at libc-start.c:220 result = unwind_buf = {cancel_jmp_buf = {{jmp_buf = {4196784, -817785121637639319, 4196432, 140735805456624, 0, 0, 817847130303519593, 855546256858176361}, mask_was_saved = 0}}, priv = {pad = {0x0, 0x0, 0x1, 0x400970}, data = { prev = 0x0, cleanup = 0x0, canceltype = 1}}} not_first_call = #115 0x0000000000400879 in _start () at ../sysdeps/x86_64/elf/start.S:113 No locals. --%<-----%<-----%<-----%<-----%<-----%<-----%<--- From nikos.alexandris at felis.uni-freiburg.de Mon Jul 27 22:08:26 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Mon Jul 27 22:08:23 2009 Subject: [GRASS-stats] spgrass6 fails to build under R 2.9.1 and Ubuntu Jaunty 64-bit In-Reply-To: <1248746736.11713.3.camel@vertical> References: <1248744689.5117.5.camel@vertical> <1248746295.11097.1.camel@vertical> <1248746736.11713.3.camel@vertical> Message-ID: <1248746906.11713.5.camel@vertical> Nikos Alexandris wrote: > > > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > > > compile? -- code is below). ( I post this on purpose separately ) --%<--- (gdb) l 31 Rmain.c: No such file or directory. in Rmain.c (gdb) frame 2 #2 0x00007fbc93902dbb in _dl_open (file=0x7fff9bb05c40 "/usr/lib64/R/modules//R_X11.so", mode=-2147483646, caller_dlopen=0x7fbc933df92b, nsid=-2, argc=1, argv=0x7fff9bb100f8, env=0x96fd60) at dl-open.c:596 596 dl-open.c: No such file or directory. in dl-open.c (gdb) l 591 in dl-open.c --%<--- From nikos.alexandris at felis.uni-freiburg.de Mon Jul 27 22:26:14 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Mon Jul 27 22:26:12 2009 Subject: [SOLVED] Re: [GRASS-stats] spgrass6 fails to build under R 2.9.1 and Ubuntu Jaunty 64-bit In-Reply-To: <1248746906.11713.5.camel@vertical> References: <1248744689.5117.5.camel@vertical> <1248746295.11097.1.camel@vertical> <1248746736.11713.3.camel@vertical> <1248746906.11713.5.camel@vertical> Message-ID: <1248747974.31825.3.camel@vertical> On Tue, 2009-07-28 at 04:08 +0200, Nikos Alexandris wrote: > Nikos Alexandris wrote: > > > > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > > > > compile? -- code is below). My R 2.9.1 was an installation of all debs that are available at "R binaries" for Ubuntu [1]. Finally I got a tarball [2] and compiled from source. It worked. Seems that the debs miss some files (perhaps Rmain.c ?). Regards, Nikos --- [1] http://cran.r-project.org/bin/linux/ubuntu/jaunty/ [2] http://cran.r-project.org/src/base/R-2/R-2.9.1.tar.gz From nikos.alexandris at felis.uni-freiburg.de Tue Jul 28 09:31:09 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Tue Jul 28 09:31:09 2009 Subject: [GRASS-stats] Re: [Qgis-user] rpy2 isntallation fails under Ubuntu Jaunty for R 2.9.1 In-Reply-To: <1248786524.2589.0.camel@vertical> References: <1248776532.5208.8.camel@vertical> <200907281423.06468.rnuske@gwdg.de> <1248786524.2589.0.camel@vertical> Message-ID: <1248787869.5917.9.camel@vertical> On Tue, 2009-07-28 at 15:08 +0200, Nikos Alexandris wrote: > On Tue, 2009-07-28 at 14:23 +0200, Robert Nuske wrote: > > Hi Nikos, > > > > I didn't have any problems on jaunty. > > > > Downloaded rpy2 to /usr/local/src, gunziped/untared it, changed to rpy2-2.0.6 > > and run 'sudo python setup.py install' > > > > This was last week for an r-base-dev from > > http://cran.at.r-project.org/bin/linux/ubuntu jaunty/ > > > > > > cheers, > > robert > > Thanks Robert. I got rid of R 2.9.1 from source and got the deb's from > the link above. Then rpy2 was successfully installed. > > All the best, Nikos Just wanted to add what I posted in grass-stats: --%<---%<---%<---%<---%<---%<---%<---%<---%<---%<---%<--- On Tue, 2009-07-28 at 04:08 +0200, Nikos Alexandris wrote: > Nikos Alexandris wrote: > > > > I am trying to get spgrass6 to work under R 2.9.1 but it fails (to > > > > compile? -- code is below). My R 2.9.1 was an installation of all debs that are available at "R binaries" for Ubuntu [1]. Finally I got a tarball [2] and compiled from source. It worked. Seems that the debs miss some files (perhaps Rmain.c ?). Regards, Nikos --- [1] http://cran.r-project.org/bin/linux/ubuntu/jaunty/ [2] http://cran.r-project.org/src/base/R-2/R-2.9.1.tar.gz --%<---%<---%<---%<---%<---%<---%<---%<---%<---%<---%<--- I had installed the all deb's on my own (and NOT by providing the link [1] in /etc/apt/sources.list). I could not install "spgrass6". Then I compiled/installed R 2.9.1 from source and "spgrass6" was installable... but not rpy2. Now I removed the "custom" R 2.9.1, copy-pasted the link [1] in /etc/apt/sources.list and installed R via ubuntu's package manager (that is: sudo apt-get install r-base r-base-dev. This way I could install rpy2. Now, it seems that I have managed to install "spgrass6" (it loads fine) but whenever I try to load "G <- gmeta6()" in R _OR_ whenever I exit an R session ( with q() ) I get error messages (again!!). Don't know what they are, if and how they affect R operations. Some code below: # working in R from within a GRASS session > library(spgrass6) Loading required package: sp Loading required package: rgdal Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11 Path to GDAL shared files: /usr/local/share/gdal Loaded PROJ.4 runtime: Rel. 4.6.0, 21 Dec 2007 Path to PROJ.4 shared files: (autodetected) Loading required package: XML GRASS GIS interface loaded with GRASS version: 6.4.0svn and location: wgs84 # loading proj info G <- gmeta6() *** glibc detected *** g.region: double free or corruption (fasttop): 0x0000000001530970 *** ======= Backtrace: ========= /lib/libc.so.6[0x7f90d13e3cb8] /lib/libc.so.6(cfree+0x76)[0x7f90d13e6276] /usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f90cf54950d] /lib/libc.so.6(__cxa_finalize+0xb0)[0x7f90d13a2ab0] /usr/lib/libgeos-3.0.0.so[0x7f90cefbd1e6] ======= Memory map: ======== 00400000-0040a000 r-xp 00000000 08:03 26667 /usr/local/grass-6.4.0svn/bin/g.region 00609000-0060a000 r--p 00009000 08:03 26667 /usr/local/grass-6.4.0svn/bin/g.region 0060a000-0060b000 rw-p 0000a000 08:03 26667 /usr/local/grass-6.4.0svn/bin/g.region 0152f000-01550000 rw-p 0152f000 00:00 0 [heap] 7f90c8000000-7f90c8021000 rw-p 7f90c8000000 00:00 0 7f90c8021000-7f90cc000000 ---p 7f90c8021000 00:00 0 7f90cc89c000-7f90cc89f000 r-xp 00000000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f90cc89f000-7f90cca9e000 ---p 00003000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f90cca9e000-7f90cca9f000 rw-p 00002000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f90cca9f000-7f90ccb04000 r-xp 00000000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f90ccb04000-7f90ccd03000 ---p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f90ccd03000-7f90ccd04000 r--p 00064000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f90ccd04000-7f90ccd06000 rw-p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f90ccd06000-7f90ccd16000 r-xp 00000000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f90ccd16000-7f90ccf15000 ---p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f90ccf15000-7f90ccf16000 r--p 0000f000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f90ccf16000-7f90ccf17000 rw-p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f90ccf17000-7f90ccfba000 r-xp 00000000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f90ccfba000-7f90cd1b9000 ---p 000a3000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f90cd1b9000-7f90cd1c3000 r--p 000a2000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f90cd1c3000-7f90cd1c4000 rw-p 000ac000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f90cd1c4000-7f90cd1dd000 r-xp 00000000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f90cd1dd000-7f90cd3dc000 ---p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f90cd3dc000-7f90cd3dd000 r--p 00018000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f90cd3dd000-7f90cd3de000 rw-p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f90cd3de000-7f90cd3ec000 r-xp 00000000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f90cd3ec000-7f90cd5eb000 ---p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f90cd5eb000-7f90cd5ec000 r--p 0000d000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f90cd5ec000-7f90cd5ed000 rw-p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f90cd5ed000-7f90cd601000 r-xp 00000000 08:03 7742 /lib/libresolv-2.9.so 7f90cd601000-7f90cd801000 ---p 00014000 08:03 7742 /lib/libresolv-2.9.so 7f90cd801000-7f90cd802000 r--p 00014000 08:03 7742 /lib/libresolv-2.9.so 7f90cd802000-7f90cd803000 rw-p 00015000 08:03 7742 /lib/libresolv-2.9.so 7f90cd803000-7f90cd805000 rw-p 7f90cd803000 00:00 0 7f90cd805000-7f90cd807000 r-xp 00000000 08:03 2596 /lib/libkeyutils-1.2.so 7f90cd807000-7f90cda06000 ---p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7f90cda06000-7f90cda07000 r--p 00001000 08:03 2596 /lib/libkeyutils-1.2.so 7f90cda07000-7f90cda08000 rw-p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7f90cda08000-7f90cda0f000 r-xp 00000000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f90cda0f000-7f90cdc0e000 ---p 00007000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f90cdc0e000-7f90cdc0f000 r--p 00006000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f90cdc0f000-7f90cdc10000 rw-p 00007000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f90cdc10000-7f90cdc33000 r-xp 00000000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f90cdc33000-7f90cde32000 ---p 00023000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f90cde32000-7f90cde34000 r--p 00022000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f90cde34000-7f90cde35000 rw-p 00024000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f90cde35000-7f90cde79000 r-xp 00000000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f90cde79000-7f90ce079000 ---p 00044000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f90ce079000-7f90ce07a000 r--p 00044000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f90ce07a000-7f90ce07c000 rw-p 00045000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f90ce07c000-7f90ce07e000 rw-p 7f90ce07c000 00:00 0 7f90ce07e000-7f90ce087000 r-xp 00000000 08:03 7729 /lib/libcrypt-2.9.so 7f90ce087000-7f90ce286000 ---p 00009000 08:03 7729 /lib/libcrypt-2.9.so 7f90ce286000-7f90ce287000 r--p 00008000 08:03 7729 /lib/libcrypt-2.9.so 7f90ce287000-7f90ce288000 rw-p 00009000 08:03 7729 /lib/libcrypt-2.9.so 7f90ce288000-7f90ce2b6000 rw-p 7f90ce288000 00:00 0 7f90ce2b6000-7f90ce2e2000 r-xp 00000000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f90ce2e2000-7f90ce4e1000 ---p 0002c000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f90ce4e1000-7f90ce4e2000 r--p 0002b000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f90ce4e2000-7f90ce4e3000 rw-p 0002c000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f90ce4e3000-7f90ce4e6000 r-xp 00000000 08:03 2572 /lib/libcom_err.so.2.1 7f90ce4e6000-7f90ce6e5000 ---p 00003000 08:03 2572 /lib/libcom_err.so.2.1 7f90ce6e5000-7f90ce6e6000 r--p 00002000 08:03 2572 /lib/libcom_err.so.2.1 7f90ce6e6000-7f90ce6e7000 rw-p 00003000 08:03 2572 /lib/libcom_err.so.2.1 7f90ce6e7000-7f90ce77f000 r-xp 00000000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f90ce77f000-7f90ce97e000 ---p 00098000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f90ce97e000-7f90ce981000 r--p 00097000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f90ce981000-7f90ce982000 rw-p 0009a000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f90ce982000-7f90ceae5000 r-xp 00000000 08:03 129184 /lib/libcrypto.so.0.9.8 7f90ceae5000-7f90cece4000 ---p 00163000 08:03 129184 /lib/libcrypto.so.0.9.8 7f90cece4000-7f90cecf1000 r--p 00162000 08:03 129184 /lib/libcrypto.so.0.9.8 7f90cecf1000-7f90ced07000 rw-p 0016f000 08:03 129184 /lib/libcrypto.so.0.9.8 7f90ced07000-7f90ced0b000 rw-p 7f90ced07000 00:00 0 7f90ced0b000-7f90ced54000 r-xp 00000000 08:03 129185 /lib/libssl.so.0.9.8 7f90ced54000-7f90cef54000 ---p 00049000 08:03 129185 /lib/libssl.so.0.9.8 7f90cef54000-7f90cef55000 r--p 00049000 08:03 129185 /lib/libssl.so.0.9.8 7f90cef55000-7f90cef5a000 rw-p 0004a000 08:03 129185 /lib/libssl.so.0.9.8 7f90cef5a000-7f90cf085000 r-xp 00000000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7f90cf085000-7f90cf284000 ---p 0012b000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7f90cf284000-7f90cf28b000 rw-p 0012a000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7f90cf28b000-7f90cf2a1000 r-xp 00000000 08:03 2586 /lib/libgcc_s.so.1 7f90cf2a1000-7f90cf4a1000 ---p 00016000 08:03 2586 /lib/libgcc_s.so.1 7f90cf4a1000-7f90cf4a2000 r--p 00016000 08:03 2586 /lib/libgcc_s.so.1 7f90cf4a2000-7f90cf4a3000 rw-p 00017000 08:03 2586 /lib/libgcc_s.so.1 7f90cf4a3000-7f90cf594000 r-xp 00000000 08:03 9977 /usr/lib/libstdc++.soAborted *** glibc detected *** g.region: double free or corruption (fasttop): 0x000000000074f970 *** ======= Backtrace: ========= /lib/libc.so.6[0x7f5eb256ecb8] /lib/libc.so.6(cfree+0x76)[0x7f5eb2571276] /usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f5eb06d450d] /lib/libc.so.6(__cxa_finalize+0xb0)[0x7f5eb252dab0] /usr/lib/libgeos-3.0.0.so[0x7f5eb01481e6] ======= Memory map: ======== 00400000-0040a000 r-xp 00000000 08:03 26667 /usr/local/grass-6.4.0svn/bin/g.region 00609000-0060a000 r--p 00009000 08:03 26667 /usr/local/grass-6.4.0svn/bin/g.region 0060a000-0060b000 rw-p 0000a000 08:03 26667 /usr/local/grass-6.4.0svn/bin/g.region 0074e000-0076f000 rw-p 0074e000 00:00 0 [heap] 7f5ea8000000-7f5ea8021000 rw-p 7f5ea8000000 00:00 0 7f5ea8021000-7f5eac000000 ---p 7f5ea8021000 00:00 0 7f5eada27000-7f5eada2a000 r-xp 00000000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f5eada2a000-7f5eadc29000 ---p 00003000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f5eadc29000-7f5eadc2a000 rw-p 00002000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f5eadc2a000-7f5eadc8f000 r-xp 00000000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f5eadc8f000-7f5eade8e000 ---p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f5eade8e000-7f5eade8f000 r--p 00064000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f5eade8f000-7f5eade91000 rw-p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f5eade91000-7f5eadea1000 r-xp 00000000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f5eadea1000-7f5eae0a0000 ---p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f5eae0a0000-7f5eae0a1000 r--p 0000f000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f5eae0a1000-7f5eae0a2000 rw-p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f5eae0a2000-7f5eae145000 r-xp 00000000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f5eae145000-7f5eae344000 ---p 000a3000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f5eae344000-7f5eae34e000 r--p 000a2000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f5eae34e000-7f5eae34f000 rw-p 000ac000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f5eae34f000-7f5eae368000 r-xp 00000000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f5eae368000-7f5eae567000 ---p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f5eae567000-7f5eae568000 r--p 00018000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f5eae568000-7f5eae569000 rw-p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f5eae569000-7f5eae577000 r-xp 00000000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f5eae577000-7f5eae776000 ---p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f5eae776000-7f5eae777000 r--p 0000d000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f5eae777000-7f5eae778000 rw-p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f5eae778000-7f5eae78c000 r-xp 00000000 08:03 7742 /lib/libresolv-2.9.so 7f5eae78c000-7f5eae98c000 ---p 00014000 08:03 7742 /lib/libresolv-2.9.so 7f5eae98c000-7f5eae98d000 r--p 00014000 08:03 7742 /lib/libresolv-2.9.so 7f5eae98d000-7f5eae98e000 rw-p 00015000 08:03 7742 /lib/libresolv-2.9.so 7f5eae98e000-7f5eae990000 rw-p 7f5eae98e000 00:00 0 7f5eae990000-7f5eae992000 r-xp 00000000 08:03 2596 /lib/libkeyutils-1.2.so 7f5eae992000-7f5eaeb91000 ---p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7f5eaeb91000-7f5eaeb92000 r--p 00001000 08:03 2596 /lib/libkeyutils-1.2.so 7f5eaeb92000-7f5eaeb93000 rw-p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7f5eaeb9300Aborted *** glibc detected *** g.proj: double free or corruption (fasttop): 0x0000000001667970 *** ======= Backtrace: ========= /lib/libc.so.6[0x7f22d04accb8] /lib/libc.so.6(cfree+0x76)[0x7f22d04af276] /usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f22ce61250d] /lib/libc.so.6(__cxa_finalize+0xb0)[0x7f22d046bab0] /usr/lib/libgeos-3.0.0.so[0x7f22ce0861e6] ======= Memory map: ======== 00400000-00406000 r-xp 00000000 08:03 26665 /usr/local/grass-6.4.0svn/bin/g.proj 00605000-00606000 r--p 00005000 08:03 26665 /usr/local/grass-6.4.0svn/bin/g.proj 00606000-00607000 rw-p 00006000 08:03 26665 /usr/local/grass-6.4.0svn/bin/g.proj 01666000-01687000 rw-p 01666000 00:00 0 [heap] 7f22c4000000-7f22c4021000 rw-p 7f22c4000000 00:00 0 7f22c4021000-7f22c8000000 ---p 7f22c4021000 00:00 0 7f22cb965000-7f22cb968000 r-xp 00000000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f22cb968000-7f22cbb67000 ---p 00003000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f22cbb67000-7f22cbb68000 rw-p 00002000 08:03 2590 /lib/libgpg-error.so.0.3.0 7f22cbb68000-7f22cbbcd000 r-xp 00000000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f22cbbcd000-7f22cbdcc000 ---p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f22cbdcc000-7f22cbdcd000 r--p 00064000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f22cbdcd000-7f22cbdcf000 rw-p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7f22cbdcf000-7f22cbddf000 r-xp 00000000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f22cbddf000-7f22cbfde000 ---p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f22cbfde000-7f22cbfdf000 r--p 0000f000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f22cbfdf000-7f22cbfe0000 rw-p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7f22cbfe0000-7f22cc083000 r-xp 00000000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f22cc083000-7f22cc282000 ---p 000a3000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f22cc282000-7f22cc28c000 r--p 000a2000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f22cc28c000-7f22cc28d000 rw-p 000ac000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7f22cc28d000-7f22cc2a6000 r-xp 00000000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f22cc2a6000-7f22cc4a5000 ---p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f22cc4a5000-7f22cc4a6000 r--p 00018000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f22cc4a6000-7f22cc4a7000 rw-p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7f22cc4a7000-7f22cc4b5000 r-xp 00000000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f22cc4b5000-7f22cc6b4000 ---p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f22cc6b4000-7f22cc6b5000 r--p 0000d000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f22cc6b5000-7f22cc6b6000 rw-p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7f22cc6b6000-7f22cc6ca000 r-xp 00000000 08:03 7742 /lib/libresolv-2.9.so 7f22cc6ca000-7f22cc8ca000 ---p 00014000 08:03 7742 /lib/libresolv-2.9.so 7f22cc8ca000-7f22cc8cb000 r--p 00014000 08:03 7742 /lib/libresolv-2.9.so 7f22cc8cb000-7f22cc8cc000 rw-p 00015000 08:03 7742 /lib/libresolv-2.9.so 7f22cc8cc000-7f22cc8ce000 rw-p 7f22cc8cc000 00:00 0 7f22cc8ce000-7f22cc8d0000 r-xp 00000000 08:03 2596 /lib/libkeyutils-1.2.so 7f22cc8d0000-7f22ccacf000 ---p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7f22ccacf000-7f22ccad0000 r--p 00001000 08:03 2596 /lib/libkeyutils-1.2.so 7f22ccad0000-7f22ccad1000 rw-p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7f22ccad1000-7f22ccad8000 r-xp 00000000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f22ccad8000-7f22cccd7000 ---p 00007000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f22cccd7000-7f22cccd8000 r--p 00006000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f22cccd8000-7f22cccd9000 rw-p 00007000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7f22cccd9000-7f22cccfc000 r-xp 00000000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f22cccfc000-7f22ccefb000 ---p 00023000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f22ccefb000-7f22ccefd000 r--p 00022000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f22ccefd000-7f22ccefe000 rw-p 00024000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7f22ccefe000-7f22ccf42000 r-xp 00000000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f22ccf42000-7f22cd142000 ---p 00044000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f22cd142000-7f22cd143000 r--p 00044000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f22cd143000-7f22cd145000 rw-p 00045000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7f22cd145000-7f22cd147000 rw-p 7f22cd145000 00:00 0 7f22cd147000-7f22cd150000 r-xp 00000000 08:03 7729 /lib/libcrypt-2.9.so 7f22cd150000-7f22cd34f000 ---p 00009000 08:03 7729 /lib/libcrypt-2.9.so 7f22cd34f000-7f22cd350000 r--p 00008000 08:03 7729 /lib/libcrypt-2.9.so 7f22cd350000-7f22cd351000 rw-p 00009000 08:03 7729 /lib/libcrypt-2.9.so 7f22cd351000-7f22cd37f000 rw-p 7f22cd351000 00:00 0 7f22cd37f000-7f22cd3ab000 r-xp 00000000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f22cd3ab000-7f22cd5aa000 ---p 0002c000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f22cd5aa000-7f22cd5ab000 r--p 0002b000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f22cd5ab000-7f22cd5ac000 rw-p 0002c000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7f22cd5ac000-7f22cd5af000 r-xp 00000000 08:03 2572 /lib/libcom_err.so.2.1 7f22cd5af000-7f22cd7ae000 ---p 00003000 08:03 2572 /lib/libcom_err.so.2.1 7f22cd7ae000-7f22cd7af000 r--p 00002000 08:03 2572 /lib/libcom_err.so.2.1 7f22cd7af000-7f22cd7b0000 rw-p 00003000 08:03 2572 /lib/libcom_err.so.2.1 7f22cd7b0000-7f22cd848000 r-xp 00000000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f22cd848000-7f22cda47000 ---p 00098000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f22cda47000-7f22cda4a000 r--p 00097000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f22cda4a000-7f22cda4b000 rw-p 0009a000 08:03 41760 /usr/lib/libkrb5.so.3.3 7f22cda4b000-7f22cdbae000 r-xp 00000000 08:03 129184 /lib/libcrypto.so.0.9.8 7f22cdbae000-7f22cddad000 ---p 00163000 08:03 129184 /lib/libcrypto.so.0.9.8 7f22cddad000-7f22cddba000 r--p 00162000 08:03 129184 /lib/libcrypto.so.0.9.8 7f22cddba000-7f22cddd0000 rw-p 0016f000 08:03 129184 /lib/libcrypto.so.0.9.8 7f22cddd0000-7f22cddd4000 rw-p 7f22cddd0000 00:00 0 7f22cddd4000-7f22cde1d000 r-xp 00000000 08:03 129185 /lib/libssl.so.0.9.8 7f22cde1d000-7f22ce01d000 ---p 00049000 08:03 129185 /lib/libssl.so.0.9.8 7f22ce01d000-7f22ce01e000 r--p 00049000 08:03 129185 /lib/libssl.so.0.9.8 7f22ce01e000-7f22ce023000 rw-p 0004a000 08:03 129185 /lib/libssl.so.0.9.8 7f22ce023000-7f22ce14e000 r-xp 00000000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7f22ce14e000-7f22ce34d000 ---p 0012b000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7f22ce34d000-7f22ce354000 rw-p 0012a000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7f22ce354000-7f22ce36a000 r-xp 00000000 08:03 2586 /lib/libgcc_s.so.1 7f22ce36a000-7f22ce56a000 ---p 00016000 08:03 2586 /lib/libgcc_s.so.1 7f22ce56a000-7f22ce56b000 r--p 00016000 08:03 2586 /lib/libgcc_s.so.1 7f22ce56b000-7f22ce56c000 rw-p 00017000 08:03 2586 /lib/libgcc_s.so.1 7f22ce56c000-7f22ce65d000 r-xp 00000000 08:03 9977 /usr/lib/libstdc++.so.6.0.1Aborted *** glibc detected *** g.proj: double free or corruption (fasttop): 0x0000000001836970 *** ======= Backtrace: ========= /lib/libc.so.6[0x7fadc86f7cb8] /lib/libc.so.6(cfree+0x76)[0x7fadc86fa276] /usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7fadc685d50d] /lib/libc.so.6(__cxa_finalize+0xb0)[0x7fadc86b6ab0] /usr/lib/libgeos-3.0.0.so[0x7fadc62d11e6] ======= Memory map: ======== 00400000-00406000 r-xp 00000000 08:03 26665 /usr/local/grass-6.4.0svn/bin/g.proj 00605000-00606000 r--p 00005000 08:03 26665 /usr/local/grass-6.4.0svn/bin/g.proj 00606000-00607000 rw-p 00006000 08:03 26665 /usr/local/grass-6.4.0svn/bin/g.proj 01835000-01856000 rw-p 01835000 00:00 0 [heap] 7fadbc000000-7fadbc021000 rw-p 7fadbc000000 00:00 0 7fadbc021000-7fadc0000000 ---p 7fadbc021000 00:00 0 7fadc3bb0000-7fadc3bb3000 r-xp 00000000 08:03 2590 /lib/libgpg-error.so.0.3.0 7fadc3bb3000-7fadc3db2000 ---p 00003000 08:03 2590 /lib/libgpg-error.so.0.3.0 7fadc3db2000-7fadc3db3000 rw-p 00002000 08:03 2590 /lib/libgpg-error.so.0.3.0 7fadc3db3000-7fadc3e18000 r-xp 00000000 08:03 2588 /lib/libgcrypt.so.11.4.4 7fadc3e18000-7fadc4017000 ---p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7fadc4017000-7fadc4018000 r--p 00064000 08:03 2588 /lib/libgcrypt.so.11.4.4 7fadc4018000-7fadc401a000 rw-p 00065000 08:03 2588 /lib/libgcrypt.so.11.4.4 7fadc401a000-7fadc402a000 r-xp 00000000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7fadc402a000-7fadc4229000 ---p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7fadc4229000-7fadc422a000 r--p 0000f000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7fadc422a000-7fadc422b000 rw-p 00010000 08:03 9983 /usr/lib/libtasn1.so.3.0.16 7fadc422b000-7fadc42ce000 r-xp 00000000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7fadc42ce000-7fadc44cd000 ---p 000a3000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7fadc44cd000-7fadc44d7000 r--p 000a2000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7fadc44d7000-7fadc44d8000 rw-p 000ac000 08:03 9498 /usr/lib/libgnutls.so.26.4.6 7fadc44d8000-7fadc44f1000 r-xp 00000000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7fadc44f1000-7fadc46f0000 ---p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7fadc46f0000-7fadc46f1000 r--p 00018000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7fadc46f1000-7fadc46f2000 rw-p 00019000 08:03 130996 /usr/lib/libsasl2.so.2.0.22 7fadc46f2000-7fadc4700000 r-xp 00000000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7fadc4700000-7fadc48ff000 ---p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7fadc48ff000-7fadc4900000 r--p 0000d000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7fadc4900000-7fadc4901000 rw-p 0000e000 08:03 9697 /usr/lib/liblber-2.4.so.2.4.1 7fadc4901000-7fadc4915000 r-xp 00000000 08:03 7742 /lib/libresolv-2.9.so 7fadc4915000-7fadc4b15000 ---p 00014000 08:03 7742 /lib/libresolv-2.9.so 7fadc4b15000-7fadc4b16000 r--p 00014000 08:03 7742 /lib/libresolv-2.9.so 7fadc4b16000-7fadc4b17000 rw-p 00015000 08:03 7742 /lib/libresolv-2.9.so 7fadc4b17000-7fadc4b19000 rw-p 7fadc4b17000 00:00 0 7fadc4b19000-7fadc4b1b000 r-xp 00000000 08:03 2596 /lib/libkeyutils-1.2.so 7fadc4b1b000-7fadc4d1a000 ---p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7fadc4d1a000-7fadc4d1b000 r--p 00001000 08:03 2596 /lib/libkeyutils-1.2.so 7fadc4d1b000-7fadc4d1c000 rw-p 00002000 08:03 2596 /lib/libkeyutils-1.2.so 7fadc4d1c000-7fadc4d23000 r-xp 00000000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7fadc4d23000-7fadc4f22000 ---p 00007000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7fadc4f22000-7fadc4f23000 r--p 00006000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7fadc4f23000-7fadc4f24000 rw-p 00007000 08:03 41761 /usr/lib/libkrb5support.so.0.1 7fadc4f24000-7fadc4f47000 r-xp 00000000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7fadc4f47000-7fadc5146000 ---p 00023000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7fadc5146000-7fadc5148000 r--p 00022000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7fadc5148000-7fadc5149000 rw-p 00024000 08:03 41758 /usr/lib/libk5crypto.so.3.1 7fadc5149000-7fadc518d000 r-xp 00000000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7fadc518d000-7fadc538d000 ---p 00044000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7fadc538d000-7fadc538e000 r--p 00044000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7fadc538e000-7fadc5390000 rw-p 00045000 08:03 9702 /usr/lib/libldap_r-2.4.so.2.4.1 7fadc5390000-7fadc5392000 rw-p 7fadc5390000 00:00 0 7fadc5392000-7fadc539b000 r-xp 00000000 08:03 7729 /lib/libcrypt-2.9.so 7fadc539b000-7fadc559a000 ---p 00009000 08:03 7729 /lib/libcrypt-2.9.so 7fadc559a000-7fadc559b000 r--p 00008000 08:03 7729 /lib/libcrypt-2.9.so 7fadc559b000-7fadc559c000 rw-p 00009000 08:03 7729 /lib/libcrypt-2.9.so 7fadc559c000-7fadc55ca000 rw-p 7fadc559c000 00:00 0 7fadc55ca000-7fadc55f6000 r-xp 00000000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7fadc55f6000-7fadc57f5000 ---p 0002c000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7fadc57f5000-7fadc57f6000 r--p 0002b000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7fadc57f6000-7fadc57f7000 rw-p 0002c000 08:03 41757 /usr/lib/libgssapi_krb5.so.2.2 7fadc57f7000-7fadc57fa000 r-xp 00000000 08:03 2572 /lib/libcom_err.so.2.1 7fadc57fa000-7fadc59f9000 ---p 00003000 08:03 2572 /lib/libcom_err.so.2.1 7fadc59f9000-7fadc59fa000 r--p 00002000 08:03 2572 /lib/libcom_err.so.2.1 7fadc59fa000-7fadc59fb000 rw-p 00003000 08:03 2572 /lib/libcom_err.so.2.1 7fadc59fb000-7fadc5a93000 r-xp 00000000 08:03 41760 /usr/lib/libkrb5.so.3.3 7fadc5a93000-7fadc5c92000 ---p 00098000 08:03 41760 /usr/lib/libkrb5.so.3.3 7fadc5c92000-7fadc5c95000 r--p 00097000 08:03 41760 /usr/lib/libkrb5.so.3.3 7fadc5c95000-7fadc5c96000 rw-p 0009a000 08:03 41760 /usr/lib/libkrb5.so.3.3 7fadc5c96000-7fadc5df9000 r-xp 00000000 08:03 129184 /lib/libcrypto.so.0.9.8 7fadc5df9000-7fadc5ff8000 ---p 00163000 08:03 129184 /lib/libcrypto.so.0.9.8 7fadc5ff8000-7fadc6005000 r--p 00162000 08:03 129184 /lib/libcrypto.so.0.9.8 7fadc6005000-7fadc601b000 rw-p 0016f000 08:03 129184 /lib/libcrypto.so.0.9.8 7fadc601b000-7fadc601f000 rw-p 7fadc601b000 00:00 0 7fadc601f000-7fadc6068000 r-xp 00000000 08:03 129185 /lib/libssl.so.0.9.8 7fadc6068000-7fadc6268000 ---p 00049000 08:03 129185 /lib/libssl.so.0.9.8 7fadc6268000-7fadc6269000 r--p 00049000 08:03 129185 /lib/libssl.so.0.9.8 7fadc6269000-7fadc626e000 rw-p 0004a000 08:03 129185 /lib/libssl.so.0.9.8 7fadc626e000-7fadc6399000 r-xp 00000000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7fadc6399000-7fadc6598000 ---p 0012b000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7fadc6598000-7fadc659f000 rw-p 0012a000 08:03 369746 /usr/lib/libgeos-3.0.0.so 7fadc659f000-7fadc65b5000 r-xp 00000000 08:03 2586 /lib/libgcc_s.so.1 7fadc65b5000-7fadc67b5000 ---p 00016000 08:03 2586 /lib/libgcc_s.so.1 7fadc67b5000-7fadc67b6000 r--p 00016000 08:03 2586 /lib/libgcc_s.so.1 7fadc67b6000-7fadc67b7000 rw-p 00017000 08:03 2586 /lib/libgcc_s.so.1 7fadc67b7000-7fadc68a8000 r-xp 00000000 08:03 9977 /usr/lib/libstdc++.so.6.0.1Aborted # exiting R q() Save workspace image? [y/n/c]: n *** glibc detected *** /usr/lib64/R/bin/exec/R: double free or corruption (fasttop): 0x000000000175a8c0 *** ======= Backtrace: ========= /lib/libc.so.6[0x7f71bc5e3cb8] /lib/libc.so.6(cfree+0x76)[0x7f71bc5e6276] /usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f71b844e50d] /lib/libc.so.6(exit+0x9d)[0x7f71bc5a26ed] /usr/lib64/R/lib/libR.so[0x7f71bcabbae8] /usr/lib64/R/lib/libR.so[0x7f71bc9e837e] /usr/lib64/R/lib/libR.so[0x7f71bc9fce99] /usr/lib64/R/lib/libR.so(Rf_eval+0x444)[0x7f71bc9bdf24] /usr/lib64/R/lib/libR.so(Rf_applyClosure+0x2bb)[0x7f71bc9c1aab] /usr/lib64/R/lib/libR.so(Rf_eval+0x393)[0x7f71bc9bde73] /usr/lib64/R/lib/libR.so(Rf_ReplIteration+0x1eb)[0x7f71bc9e9c9b] /usr/lib64/R/lib/libR.so[0x7f71bc9e9f08] /usr/lib64/R/lib/libR.so(run_Rmainloop+0x50)[0x7f71bc9e9fa0] /usr/lib64/R/bin/exec/R(main+0x1b)[0x40098b] /lib/libc.so.6(__libc_start_main+0xe6)[0x7f71bc58a5a6] /usr/lib64/R/bin/exec/R[0x400879] ======= Memory map: ======== 00400000-00401000 r-xp 00000000 08:03 145343 /usr/lib/R/bin/exec/R 00600000-00601000 r--p 00000000 08:03 145343 /usr/lib/R/bin/exec/R 00601000-00602000 rw-p 00001000 08:03 145343 /usr/lib/R/bin/exec/R 0143d000-037c8000 rw-p 0143d000 00:00 0 [heap] 7f71ac000000-7f71ac021000 rw-p 7f71ac000000 00:00 0 7f71ac021000-7f71b0000000 ---p 7f71ac021000 00:00 0 7f71b1865000-7f71b19b8000 r-xp 00000000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f71b19b8000-7f71b1bb7000 ---p 00153000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f71b1bb7000-7f71b1bbf000 r--p 00152000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f71b1bbf000-7f71b1bc1000 rw-p 0015a000 08:03 20890 /usr/lib/libxml2.so.2.6.32 7f71b1bc1000-7f71b1bc2000 rw-p 7f71b1bc1000 00:00 0 7f71b1bc2000-7f71b1bdd000 r-xp 00000000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f71b1bdd000-7f71b1ddd000 ---p 0001b000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f71b1ddd000-7f71b1dde000 r--p 0001b000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f71b1dde000-7f71b1ddf000 rw-p 0001c000 08:03 160572 /usr/local/lib/R/site-library/XML/libs/XML.so 7f71b1ddf000-7f71b1dea000 r-xp 00000000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f71b1dea000-7f71b1fea000 ---p 0000b000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f71b1fea000-7f71b1feb000 r--p 0000b000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f71b1feb000-7f71b1fec000 rw-p 0000c000 08:03 161788 /usr/local/lib/gdalplugins/ogr_GRASS.so 7f71b1fec000-7f71b20a2000 r-xp 00000000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f71b20a2000-7f71b22a1000 ---p 000b6000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f71b22a1000-7f71b22a7000 r--p 000b5000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f71b22a7000-7f71b22a8000 rw-p 000bb000 08:03 103912 /usr/lib/libfftw3.so.3.1.2 7f71b22a8000-7f71b22a9000 r-xp 00000000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f71b22a9000-7f71b24a9000 ---p 00001000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f71b24a9000-7f71b24aa000 r--p 00001000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f71b24aa000-7f71b24ab000 rw-p 00002000 08:03 269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so 7f71b24ab000-7f71b24b1000 r-xp 00000000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f71b24b1000-7f71b26b0000 ---p 00006000 08:03 269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so 7f71b26b0000-7f71b26b1000 r--p 00005000 08:03 269592 /usrAborted From nikos.alexandris at felis.uni-freiburg.de Tue Jul 28 09:38:30 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Tue Jul 28 09:38:25 2009 Subject: [GRASS-stats] Re: [Qgis-user] rpy2 isntallation fails under Ubuntu Jaunty for R 2.9.1 In-Reply-To: <1248787869.5917.9.camel@vertical> References: <1248776532.5208.8.camel@vertical> <200907281423.06468.rnuske@gwdg.de> <1248786524.2589.0.camel@vertical> <1248787869.5917.9.camel@vertical> Message-ID: <1248788310.5917.12.camel@vertical> To me it seems that _currently_ the source 2.9.1 R fails to support rpy2 compilation (or I just compile/install it in the wrong way) and the binaries (deb's) fail to support comilation/installation of "spgrass6". Ubuntu-users, can you execute "G<-gmeta6()" in latest R-2.9.1 installed from ubuntu repositories for Ubuntu Jaunty (64-bit)? Thanks, Nikos From nikos.alexandris at felis.uni-freiburg.de Tue Jul 28 11:24:55 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Tue Jul 28 11:24:51 2009 Subject: [GRASS-stats] Re: [Qgis-user] rpy2 isntallation fails under Ubuntu Jaunty for R 2.9.1 In-Reply-To: <94b3c8440907280749p18c29c16vcfbf63aa310b424d@mail.gmail.com> References: <1248776532.5208.8.camel@vertical> <200907281423.06468.rnuske@gwdg.de> <1248786524.2589.0.camel@vertical> <1248787869.5917.9.camel@vertical> <1248788310.5917.12.camel@vertical> <94b3c8440907280749p18c29c16vcfbf63aa310b424d@mail.gmail.com> Message-ID: <1248794695.5773.4.camel@vertical> Nikos: > > To me it seems that _currently_ the source 2.9.1 R fails to support rpy2 > > compilation (or I just compile/install it in the wrong way) and the > > binaries (deb's) fail to support comilation/installation of "spgrass6". Carson Farmer wrote: > If you're going to compile R from source, you need to make sure to > configure with shared libraries enabled for Rpy2 to work properly. I > didn't see whether you had done this earlier or not... > > $ ./configure --enable-R-shlib > $ make > $ make install Thanks Carson. I (just) successfully did that after a lot of searching in the documentation. Nevertheless, after removing *everything*, the deb's worked for both the rpy2 and spgrass6 package. Apologies for the mail-traffic. Cheers, Nikos From nikos.alexandris at felis.uni-freiburg.de Tue Jul 28 21:39:39 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Tue Jul 28 21:39:36 2009 Subject: [GRASS-stats] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. Message-ID: <1248831579.13433.3.camel@vertical> Hi dev's and advanced useRs, I have seen this message for the X-th time now :-( while trying to load (anything) data using readRAST6 or readVECT6. I've rebuild grass-6.4.0svn 2-3 times now. I've re-installed R 2-3 times as well. Not to mention how many attempts to get "spgrass6". Which is the "incompatible library" and to which "module" does it refer to? Is this an R error or a grass error? Any help is *higly* appreciated. Kind regards, Nikos From nikos.alexandris at felis.uni-freiburg.de Tue Jul 28 22:46:57 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Tue Jul 28 22:46:54 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: References: <1248831579.13433.3.camel@vertical> Message-ID: <1248835617.17239.6.camel@vertical> stephen sefick wrote: > What computer architecture, operating system, what R version etc.? Right, I assume that people know that I am using Ubuntu Jaunty 64-bit, R 2.9.1, latest rpy2, grass-6.4.0svn from source. > What is the error message? The message is the title of this thread. > I am usingce 6.4RC5 GRASS and R 2.9.1 on mac > OS X 10.5.7, and it is working fine. I remember there being a problem > with something, but I don't remember exactly what. If you were to > provide the error message then maybe it would jog my memory. Sorry, that's all the prog prints. > Also, it may be a good idea to search the R-sig-geo list archive, as your > problem may have already been solved (assuming it is the same one that > I had). Before doing countless compilations/installations I filtered the web for an hour! I've found some similar messages in grass-dev's mailing-list but nothing specific. I thought that /etc/ld.so.conf is my problem... and I commented out all grass-versions but grass-6.4.0svn. I even removed all other grass-versions, (re-)installed X-times spgrass6 but no luck. It's the first time I see this message. I also tried to do some debugging but R requires, I guess, special treatment (meaning other than gdb, etc.) !? Nikos From nikos.alexandris at felis.uni-freiburg.de Tue Jul 28 23:35:06 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Tue Jul 28 23:35:02 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: References: <1248831579.13433.3.camel@vertical> <1248835617.17239.6.camel@vertical> Message-ID: <1248838506.19929.1.camel@vertical> On Tue, 2009-07-28 at 22:06 -0500, stephen sefick wrote: > WOW! I don't have a clue. That is nowhere close to the problem that > I had. Sorry if I am asking obvious, or redundant questions. Are you > installing within R, or from the commandline (R CMD install)? >From within R with root access (e.g. sudo R, then the rest). > I will > help if I can, but I think this may be over my paygrade. > good luck! Thanks for your concern Stephen. Kind regards, Nikos From Roger.Bivand at nhh.no Wed Jul 29 04:12:19 2009 From: Roger.Bivand at nhh.no (Roger Bivand) Date: Wed Jul 29 04:12:23 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: <1248835617.17239.6.camel@vertical> References: <1248831579.13433.3.camel@vertical> <1248835617.17239.6.camel@vertical> Message-ID: On Wed, 29 Jul 2009, Nikos Alexandris wrote: > > stephen sefick wrote: > >> What computer architecture, operating system, what R version etc.? > > Right, I assume that people know that I am using Ubuntu Jaunty 64-bit, R > 2.9.1, latest rpy2, grass-6.4.0svn from source. Please always repeat everything every time; don't delete content from threads. I'm travelling and cannot handhold. Build only from source, only one piece at a time, and check everything every time. I'm sure that other people have seen dependency problems when installing from binary on this platform. This is not seen on any other platform (Linux, Windows, OSX). There are two underlying problems: "dependency hell" and your inability to sort out your own system. I suspect that the XML package in R does not have its dependencies satisfied. It could also be GDAL/GRASS not having dependencies satisfied. The reason to build from source is that then you control the dependencies, rather than the reverse. Please stop creating the impressionn that software that works for effectively everyone else is broken only because you can't get your own system to work, and expect others to do your work for you! Roger > >> What is the error message? > > The message is the title of this thread. > >> I am usingce 6.4RC5 GRASS and R 2.9.1 on mac >> OS X 10.5.7, and it is working fine. I remember there being a problem >> with something, but I don't remember exactly what. If you were to >> provide the error message then maybe it would jog my memory. > > Sorry, that's all the prog prints. > >> Also, it may be a good idea to search the R-sig-geo list archive, as your >> problem may have already been solved (assuming it is the same one that >> I had). > > Before doing countless compilations/installations I filtered the web for > an hour! I've found some similar messages in grass-dev's mailing-list > but nothing specific. > > I thought that /etc/ld.so.conf is my problem... and I commented out all > grass-versions but grass-6.4.0svn. I even removed all other > grass-versions, (re-)installed X-times spgrass6 but no luck. > > It's the first time I see this message. I also tried to do some > debugging but R requires, I guess, special treatment (meaning other than > gdb, etc.) !? > > Nikos > > _______________________________________________ > grass-stats mailing list > grass-stats@lists.osgeo.org > http://lists.osgeo.org/mailman/listinfo/grass-stats > -- Roger Bivand Economic Geography Section, Department of Economics, Norwegian School of Economics and Business Administration, Helleveien 30, N-5045 Bergen, Norway. voice: +47 55 95 93 55; fax +47 55 95 95 43 e-mail: Roger.Bivand@nhh.no From glynn at gclements.plus.com Wed Jul 29 06:23:33 2009 From: glynn at gclements.plus.com (Glynn Clements) Date: Wed Jul 29 06:23:38 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: <1248831579.13433.3.camel@vertical> References: <1248831579.13433.3.camel@vertical> Message-ID: <19056.8997.337941.484196@cerise.gclements.plus.com> Nikos Alexandris wrote: > Hi dev's and advanced useRs, > > I have seen this message for the X-th time now :-( while trying to load > (anything) data using readRAST6 or readVECT6. > > I've rebuild grass-6.4.0svn 2-3 times now. I've re-installed R 2-3 times > as well. Not to mention how many attempts to get "spgrass6". > > Which is the "incompatible library" libgrass_gis > and to which "module" does it refer to? Whatever is calling G_gisinit(). > Is this an R error or a grass error? Any help is *higly* > appreciated. It means that something was compiled using from one version of GRASS, but when run it uses libgrass_gis from a different version. It may be a problem with R. It can also be caused by a GDAL library (or GDAL-GRASS plugin) which was built with GRASS support. You might want to try using gdalinfo on a GRASS dataset to confirm or deny this possibility. -- Glynn Clements From nikos.alexandris at felis.uni-freiburg.de Wed Jul 29 08:13:45 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Wed Jul 29 08:13:53 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: <19056.8997.337941.484196@cerise.gclements.plus.com> References: <1248831579.13433.3.camel@vertical> <19056.8997.337941.484196@cerise.gclements.plus.com> Message-ID: <1248869625.5172.5.camel@vertical> On Wed, 2009-07-29 at 11:23 +0100, Glynn Clements wrote: > Nikos Alexandris wrote: > > > Hi dev's and advanced useRs, > > > > I have seen this message for the X-th time now :-( while trying to load > > (anything) data using readRAST6 or readVECT6. > > > > I've rebuild grass-6.4.0svn 2-3 times now. I've re-installed R 2-3 times > > as well. Not to mention how many attempts to get "spgrass6". > > > > Which is the "incompatible library" > > libgrass_gis > > > and to which "module" does it refer to? > > Whatever is calling G_gisinit(). > > > Is this an R error or a grass error? Any help is *higly* > > appreciated. > > It means that something was compiled using from one > version of GRASS, but when run it uses libgrass_gis from a different > version. > > It may be a problem with R. It can also be caused by a GDAL library > (or GDAL-GRASS plugin) which was built with GRASS support. You might > want to try using gdalinfo on a GRASS dataset to confirm or deny this > possibility. Thanks. It's, like most of the times, my ignorance on how to deal with compiling/installing issues. I guess you are Glynn. gdalinfo segfaults when trying to "query" a grass raster (under cellhd). Kind regards, Nikos From nikos.alexandris at felis.uni-freiburg.de Wed Jul 29 08:15:42 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Wed Jul 29 08:15:48 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: <2b3d8c1c0907290143k26671e62v2a68c334f3dd3cb8@mail.gmail.com> References: <1248831579.13433.3.camel@vertical> <2b3d8c1c0907290143k26671e62v2a68c334f3dd3cb8@mail.gmail.com> Message-ID: <1248869742.5172.7.camel@vertical> Nikos Alexandris: > > Hi dev's and advanced useRs, > > > > I have seen this message for the X-th time now :-( while trying to load > > (anything) data using readRAST6 or readVECT6. > > > > I've rebuild grass-6.4.0svn 2-3 times now. I've re-installed R 2-3 times > > as well. Not to mention how many attempts to get "spgrass6". > > > > Which is the "incompatible library" and to which "module" does it refer > > to? Is this an R error or a grass error? Any help is *higly* > > appreciated. Maris Nartiss wrote: > In two words - You are running module compiled for different GRASS > version than one You are running. Recompile affected module OR, if You > have multiple GRASS installations, fix Your LD_LIBRARY_PATH paths. Thanks Maris, I am learning continuously ;-) From nikos.alexandris at felis.uni-freiburg.de Wed Jul 29 08:18:42 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Wed Jul 29 08:18:46 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: References: <1248831579.13433.3.camel@vertical> <1248835617.17239.6.camel@vertical> <1248838506.19929.1.camel@vertical> Message-ID: <1248869922.5172.10.camel@vertical> stephen sefick wrote: > Nikos, > I am sorry I couldn't be of more help. When you resolve the issue > would you mind telling me what you found. My interest is peaked. I am glad you took the time to read my post :-) Nikos From nikos.alexandris at felis.uni-freiburg.de Wed Jul 29 08:37:27 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Wed Jul 29 08:37:32 2009 Subject: [GRASS-stats] Re: [GRASS-user] error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: References: <1248831579.13433.3.camel@vertical> <1248835617.17239.6.camel@vertical> Message-ID: <1248871048.5172.29.camel@vertical> stephen sefick wrote: > >> What computer architecture, operating system, what R version etc.? Nikos Alexandris wrote: > > Right, I assume that people know that I am using Ubuntu Jaunty 64-bit, R > > 2.9.1, latest rpy2, grass-6.4.0svn from source. > Please always repeat everything every time; don't delete content from > threads. I'm travelling and cannot handhold. Just try to do them more easy to read :-). Maybe I overdid it :-O > Build only from source, only one piece at a time, and check everything > every time. I'm sure that other people have seen dependency problems when > installing from binary on this platform. This is not seen on any other > platform (Linux, Windows, OSX). There are two underlying problems: > "dependency hell" and your inability to sort out your own system. I > suspect that the XML package in R does not have its dependencies > satisfied. It could also be GDAL/GRASS not having dependencies satisfied. > The reason to build from source is that then you control the dependencies, > rather than the reverse. > > Please stop creating the impressionn that software that works for > effectively everyone else is broken only because you can't get your own > system to work, and expect others to do your work for you! True, it's my ignorance on how to deal with compilation/installation issues. Nevertheless, I strongly believe that there is always some gain by asking questions, even if they are not "smart". No offense, but unfortunately of fortunately I can only promise that, for as long as I am interested to understand/learn, I'll keep asking :-p Kindest regards, Nikos > > > >> What is the error message? > > > > The message is the title of this thread. > > > >> I am usingce 6.4RC5 GRASS and R 2.9.1 on mac > >> OS X 10.5.7, and it is working fine. I remember there being a problem > >> with something, but I don't remember exactly what. If you were to > >> provide the error message then maybe it would jog my memory. > > > > Sorry, that's all the prog prints. > > > >> Also, it may be a good idea to search the R-sig-geo list archive, as your > >> problem may have already been solved (assuming it is the same one that > >> I had). > > > > Before doing countless compilations/installations I filtered the web for > > an hour! I've found some similar messages in grass-dev's mailing-list > > but nothing specific. > > > > I thought that /etc/ld.so.conf is my problem... and I commented out all > > grass-versions but grass-6.4.0svn. I even removed all other > > grass-versions, (re-)installed X-times spgrass6 but no luck. > > > > It's the first time I see this message. I also tried to do some > > debugging but R requires, I guess, special treatment (meaning other than > > gdb, etc.) !? > > > > Nikos From nikos.alexandris at felis.uni-freiburg.de Wed Jul 29 16:33:43 2009 From: nikos.alexandris at felis.uni-freiburg.de (Nikos Alexandris) Date: Wed Jul 29 16:33:46 2009 Subject: [GRASS-stats] Re: error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: <1248831579.13433.3.camel@vertical> References: <1248831579.13433.3.camel@vertical> Message-ID: <1248899623.5793.2.camel@vertical> On Wed, 2009-07-29 at 03:39 +0200, Nikos Alexandris wrote: > Hi dev's and advanced useRs, > > I have seen this message for the X-th time now :-( while trying to load > (anything) data using readRAST6 or readVECT6. > > I've rebuild grass-6.4.0svn 2-3 times now. I've re-installed R 2-3 times > as well. Not to mention how many attempts to get "spgrass6". > > Which is the "incompatible library" and to which "module" does it refer > to? Is this an R error or a grass error? Any help is *higly* > appreciated. After so many posts of mine one more wont hurt :-p. Finally it was gdal-grass (however I want to mention that I got rid of all other grass-versions but 6.4.0sv). Thanks, Nikos From jarekj at amu.edu.pl Thu Jul 30 01:56:47 2009 From: jarekj at amu.edu.pl (Jarek Jasiewicz) Date: Thu Jul 30 01:56:55 2009 Subject: [GRASS-stats] Re: error: Incompatible library version for module. You need to rebuild GRASS or untangle multiple installations. In-Reply-To: <1248899623.5793.2.camel@vertical> References: <1248831579.13433.3.camel@vertical> <1248899623.5793.2.camel@vertical> Message-ID: <4A71361F.2030409@amu.edu.pl> Nikos Alexandris pisze: > On Wed, 2009-07-29 at 03:39 +0200, Nikos Alexandris wrote: > >> Hi dev's and advanced useRs, >> >> I have seen this message for the X-th time now :-( while trying to load >> (anything) data using readRAST6 or readVECT6. >> >> I've rebuild grass-6.4.0svn 2-3 times now. I've re-installed R 2-3 times >> as well. Not to mention how many attempts to get "spgrass6". >> >> Which is the "incompatible library" and to which "module" does it refer >> to? Is this an R error or a grass error? Any help is *higly* >> appreciated. >> > > After so many posts of mine one more wont hurt :-p. Finally it was > gdal-grass (however I want to mention that I got rid of all other > grass-versions but 6.4.0sv). > > Thanks, Nikos > it was mentioned and solved eriler http://lists.osgeo.org/pipermail/grass-stats/2009-January/000897.html Jarek > _______________________________________________ > grass-stats mailing list > grass-stats@lists.osgeo.org > http://lists.osgeo.org/mailman/listinfo/grass-stats > From a.ghisla at gmail.com Fri Jul 31 11:42:24 2009 From: a.ghisla at gmail.com (Anne Ghisla) Date: Fri Jul 31 11:40:54 2009 Subject: [GRASS-stats] [Report #10] Kriging with GRASS and R: v.autokrige port to wxPython and more Message-ID: <1249054944.4606.34.camel@galadriel.uagra.net> Hello all, and sorry for cross-posting, good news from v.krige: * fixed optional parameters also in interface - activated by a checkbox, otherwise R's NA value is correctly set * interactive variogram fit is on its way - stay tuned! Next week I plan to set up interactive variogram using matplotlib functions and get the stabler code possible for feature freeze. best regards, Anne - -- http://grass.osgeo.org/wiki/V.krige_GSoC_2009 -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 197 bytes Desc: Questa =?ISO-8859-1?Q?=E8?= una parte del messaggio firmata digitalmente Url : http://lists.osgeo.org/pipermail/grass-stats/attachments/20090731/1382f03a/attachment.bin