[GRASS-user] problem to install grass70 on ubuntu 12.04 and dependencies for kriging
John Nicholls
johnnicholls at fastmail.fm
Thu Aug 28 02:57:41 PDT 2014
Hi
Thanks for the help to get Grass7 running on my laptop.
I followed the workaround "sudo apt-get install grass70-core
grass70-gui" and now have grass70 running on Ubuntu 14.04 LTS:
I am trying to use the v.krige command in Grass7, and when doing so
receive the following:
Loading dependencies, please wait...
Checking rgeos availability: FALSE
Note: when rgeos is not available, polygon geometry
computations in maptools depend on gpclib,
which has a restricted licence. It is disabled by default;
to enable gpclib, type gpclibPermit()
ERROR: R package(s) rgeos, gstat, spgrass6 missing. Install it/them and
re-run v.krige.
I've installed python-rpy2.2.3.9-1 via the Ubuntu package manager, and
enabled gpclib.
Following the instructions in
http://grass.osgeo.org/grass65/manuals/v.krige.py.html I've typed in
install.packages("rgeos", dep=T)
install.packages("gstat", dep=T)
install.packages("spgrass6", dep=T)
install.packages("automap", dep=T)
Unfortunately I'm getting errors in the installation of "rgeos",
"gstat", "spgrass6", and "automap", which are detailed below. Does
anyone know where I might be going wrong. The version of R installed on
my laptop is R version 3.0.2 (2013-09-25) -- "Frisbee Sailing", and I
have a version of RKward also installed.
I am neither a Grass nor R expert, needless to say....
install.packages("rgeos", dep=T)
Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
also installing the dependency ‘XML’
trying URL
'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb
trying URL
'http://www.freestatistics.org/cran/src/contrib/rgeos_0.3-6.tar.gz'
Content type 'application/x-gzip' length 240510 bytes (234 Kb)
opened URL
==================================================
downloaded 234 Kb
* installing *source* package ‘XML’ ...
** package ‘XML’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... rm: cannot remove
'a.out.dSYM': Is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... no
Cannot find xml2-config
ERROR: configuration failed for package ‘XML’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
* installing *source* package ‘rgeos’ ...
** package ‘rgeos’ successfully unpacked and MD5 sums checked
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgeos: 0.3-4
checking for /usr/bin/svnversion... no
configure: svn revision: 450
checking geos-config usability... ./configure: line 2056: geos-config:
command not found
no
configure: error: geos-config not usable
ERROR: configuration failed for package ‘rgeos’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgeos’
The downloaded source packages are in
‘/tmp/RtmpRYggF0/downloaded_packages’
Warning messages:
1: In install.packages("rgeos", dep = T) :
installation of package ‘XML’ had non-zero exit status
2: In install.packages("rgeos", dep = T) :
installation of package ‘rgeos’ had non-zero exit status
> install.packages("gstat", dep=T)
Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
also installing the dependencies ‘spacetime’, ‘rgdal’, ‘rgeos’
trying URL
'http://www.freestatistics.org/cran/src/contrib/spacetime_1.1-1.tar.gz'
Content type 'application/x-gzip' length 2269252 bytes (2.2 Mb)
opened URL
==================================================
downloaded 2.2 Mb
trying URL
'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb
trying URL
'http://www.freestatistics.org/cran/src/contrib/rgeos_0.3-6.tar.gz'
Content type 'application/x-gzip' length 240510 bytes (234 Kb)
opened URL
==================================================
downloaded 234 Kb
trying URL
'http://www.freestatistics.org/cran/src/contrib/gstat_1.0-19.tar.gz'
Content type 'application/x-gzip' length 2045717 bytes (2.0 Mb)
opened URL
==================================================
downloaded 2.0 Mb
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 0.8-15
checking for /usr/bin/svnversion... no
configure: svn revision: 498
configure: gdal-config: gdal-config
checking gdal-config usability... ./configure: line 2119: gdal-config:
command not found
no
Error: gdal-config not found
The gdal-config script distributed with GDAL could not be found.
If you have not installed the GDAL libraries, you can
download the source from http://www.gdal.org/
If you have installed the GDAL libraries, then make sure that
gdal-config is in your path. Try typing gdal-config at a
shell prompt and see if it runs. If not, use:
--configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
with appropriate values for your installation.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
* installing *source* package ‘rgeos’ ...
** package ‘rgeos’ successfully unpacked and MD5 sums checked
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgeos: 0.3-4
checking for /usr/bin/svnversion... no
configure: svn revision: 450
checking geos-config usability... ./configure: line 2056: geos-config:
command not found
no
configure: error: geos-config not usable
ERROR: configuration failed for package ‘rgeos’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgeos’
ERROR: dependency ‘rgeos’ is not available for package ‘spacetime’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spacetime’
ERROR: dependency ‘spacetime’ is not available for package ‘gstat’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/gstat’
The downloaded source packages are in
‘/tmp/RtmpRYggF0/downloaded_packages’
Warning messages:
1: In install.packages("gstat", dep = T) :
installation of package ‘rgdal’ had non-zero exit status
2: In install.packages("gstat", dep = T) :
installation of package ‘rgeos’ had non-zero exit status
3: In install.packages("gstat", dep = T) :
installation of package ‘spacetime’ had non-zero exit status
4: In install.packages("gstat", dep = T) :
installation of package ‘gstat’ had non-zero exit status
> install.packages("spgrass6", dep=T)
Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
also installing the dependencies ‘XML’, ‘rgdal’
trying URL
'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb
trying URL
'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb
trying URL
'http://www.freestatistics.org/cran/src/contrib/spgrass6_0.8-3.tar.gz'
Content type 'application/x-gzip' length 274678 bytes (268 Kb)
opened URL
==================================================
downloaded 268 Kb
* installing *source* package ‘XML’ ...
** package ‘XML’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... rm: cannot remove
'a.out.dSYM': Is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... no
Cannot find xml2-config
ERROR: configuration failed for package ‘XML’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 0.8-15
checking for /usr/bin/svnversion... no
configure: svn revision: 498
configure: gdal-config: gdal-config
checking gdal-config usability... ./configure: line 2119: gdal-config:
command not found
no
Error: gdal-config not found
The gdal-config script distributed with GDAL could not be found.
If you have not installed the GDAL libraries, you can
download the source from http://www.gdal.org/
If you have installed the GDAL libraries, then make sure that
gdal-config is in your path. Try typing gdal-config at a
shell prompt and see if it runs. If not, use:
--configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
with appropriate values for your installation.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
ERROR: dependency ‘XML’ is not available for package ‘spgrass6’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spgrass6’
The downloaded source packages are in
‘/tmp/RtmpRYggF0/downloaded_packages’
Warning messages:
1: In install.packages("spgrass6", dep = T) :
installation of package ‘XML’ had non-zero exit status
2: In install.packages("spgrass6", dep = T) :
installation of package ‘rgdal’ had non-zero exit status
3: In install.packages("spgrass6", dep = T) :
installation of package ‘spgrass6’ had non-zero exit status
> install.packages("spgrass6", dep=T)
Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
also installing the dependencies ‘XML’, ‘rgdal’
trying URL
'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb
trying URL
'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb
trying URL
'http://www.freestatistics.org/cran/src/contrib/spgrass6_0.8-3.tar.gz'
Content type 'application/x-gzip' length 274678 bytes (268 Kb)
opened URL
==================================================
downloaded 268 Kb
* installing *source* package ‘XML’ ...
** package ‘XML’ successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... rm: cannot remove
'a.out.dSYM': Is a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... no
Cannot find xml2-config
ERROR: configuration failed for package ‘XML’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: rgdal: 0.8-15
checking for /usr/bin/svnversion... no
configure: svn revision: 498
configure: gdal-config: gdal-config
checking gdal-config usability... ./configure: line 2119: gdal-config:
command not found
no
Error: gdal-config not found
The gdal-config script distributed with GDAL could not be found.
If you have not installed the GDAL libraries, you can
download the source from http://www.gdal.org/
If you have installed the GDAL libraries, then make sure that
gdal-config is in your path. Try typing gdal-config at a
shell prompt and see if it runs. If not, use:
--configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
with appropriate values for your installation.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
ERROR: dependency ‘XML’ is not available for package ‘spgrass6’
* removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spgrass6’
The downloaded source packages are in
‘/tmp/RtmpRYggF0/downloaded_packages’
Warning messages:
1: In install.packages("spgrass6", dep = T) :
installation of package ‘XML’ had non-zero exit status
2: In install.packages("spgrass6", dep = T) :
installation of package ‘rgdal’ had non-zero exit status
3: In install.packages("spgrass6", dep = T) :
installation of package ‘spgrass6’ had non-zero exit status
On Wed, Aug 27, 2014, at 10:10 PM, Markus Neteler wrote:
> On Wed, Aug 27, 2014 at 9:08 PM, César Augusto Ramírez Franco
> <caesarivs at gmail.com> wrote:
> > I don't know why, but there appears to be a conflict between grass70 and
> > grass70-core packages.
> >
> > I've been using that PPA on 14.04 but the package grass70 is not installed
> > in my system:
> ...
> > And grass is working OK, so I'd say the workaround should be issuing:
> >
> > sudo apt-get install grass70-core grass70-gui
>
> pgis at pgis-ubuntu64-vm:~$ sudo apt-get install grass70-core grass70-gui
> Reading package lists... Done
> Building dependency tree
> Reading state information... Done
> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
>
> The following packages have unmet dependencies:
> grass70-core : Depends: libgdal1h (>= 1.8.0) but it is not installable
> Depends: libgeos-c1 (>= 3.4.2) but it is not going to
> be installed
> Depends: libproj0 (>= 4.8.0-1) but it is not going to
> be installed
> Recommends: gdal-bin but it is not going to be installed
> Recommends: proj-bin but it is not going to be installed
> E: Unable to correct problems, you have held broken packages.
>
> ... also failing today (Ubuntu 12.04 here)
>
> Markus
> _______________________________________________
> grass-user mailing list
> grass-user at lists.osgeo.org
> http://lists.osgeo.org/mailman/listinfo/grass-user
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