<div dir="ltr"><div dir="ltr"><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Feb 11, 2021 at 3:14 PM Mitchell Meads <<a href="mailto:mitchell.meads@tamu.edu">mitchell.meads@tamu.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Anna,<div><br></div><div>Thank you for the helpful information! I suppose I was somewhat confused as to what exactly should all be in the parameters for the r.futures.potential submodel. I've made the changes you've suggested above, but I'm still getting some type of "Unable to select cursor" error. Below is the command output with its errors, if you could help me pin down what I'm doing wrong, that would be great! Also on a side note, unfortunately, I'm not experienced in R and and somewhat relying on the futures modeling in GRASS to complete my task. Thanks again for your help!</div><div><br></div><div>(Thu Feb 11 13:11:21 2021) <br>r.futures.potential --overwrite input=sampling_f_km@PERMANENT output=potential_f_km.csv columns=devclip_2016,block_rast,county_rast,devpress_0_5_2016,dist_to_evac_km,dist_to_pp_km,dist_toh20_2001_km,dist_toh20_2004_km,dist_toh20_2006,dist_toh20_2008_km,dist_toh20_2011_km,dist_toh20_2013_km,dist_toh20_2016_km,per_forest_2001,per_forest_2004,per_forest_2006,per_forest_2008,per_forest_2011,per_forest_2013,per_forest_2016,urban_change_01_16 developed_column=devclip_2016 subregions_column=county_rast min_variables=5 max_variables=10<br>Computing model...<br>WARNING: fixed-effect model matrix is rank deficient so dropping 2 columns / coefficients<br>Error in pwrssUpdate(pp, resp, tol = tolPwrss, GQmat = GQmat, compDev = compDev, :<br>pwrssUpdate did not converge in (maxit) iterations<br>Calls: glmer ... <Anonymous> -> <Anonymous> -> stopifnot -> fn -> pwrssUpdate<br>In addition: Warning message:<br>Some predictor variables are on very different scales: consider rescaling<br>Execution halted<br>WARNING: fixed-effect model matrix is rank deficient so dropping 2 columns / coefficients<br>Error in pwrssUpdate(pp, resp, tol = tolPwrss, GQmat = GQmat, compDev = compDev, :<br>pwrssUpdate did not converge in (maxit) iterations<br>Calls: glmer ... <Anonymous> -> <Anonymous> -> stopifnot -> fn -> pwrssUpdate<br>In addition: Warning message:<br>Some predictor variables are on very different scales: consider rescaling<br>Execution halted<br>ERROR: Running R script failed, check messages above<br>(Thu Feb 11 13:11:25 2021) Command finished (3 sec) <br>(Thu Feb 11 14:09:43 2021) <br>r.futures.potential -d --overwrite input=sampling_f_km@PERMANENT output=potential_f_km.csv columns=devclip_2016,devpress_0_5_2016,dist_to_evac_km,dist_to_pp_km,dist_toh20_2016_km,per_forest_2016, </div></div></blockquote><div><br></div><div>looks like you have an extra comma after per_forest_2016? What is devclip_2016? </div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>developed_column=urban_change_01_16 subregions_column=county_rast min_variables=2 max_variables=6<br>DBMI-SQLite driver error:<br>Error in sqlite3_prepare():<br>SELECT devclip_2016,devpress_0_5_2016,dist_to_evac_km,dist_t<br>o_pp_km,dist_toh20_2016_km,per_forest_2016,,urban_change_01_<br>16,county_rast FROM sampling_f_km WHERE devclip_2016 IS NOT<br>NULL AND devpress_0_5_2016 IS NOT NULL AND dist_to_evac_km<br>IS NOT NULL AND dist_to_pp_km IS NOT NULL AND<br>dist_toh20_2016_km IS NOT NULL AND per_forest_2016 IS NOT<br>NULL AND IS NOT NULL AND urban_change_01_16 IS NOT NULL AND<br>county_rast IS NOT NULL<br>near ",": syntax error<br>DBMI-SQLite driver error:<br>Error in sqlite3_prepare():<br>SELECT devclip_2016,devpress_0_5_2016,dist_to_evac_km,dist_t<br>o_pp_km,dist_toh20_2016_km,per_forest_2016,,urban_change_01_<br>16,county_rast FROM sampling_f_km WHERE devclip_2016 IS NOT<br>NULL AND devpress_0_5_2016 IS NOT NULL AND dist_to_evac_km<br>IS NOT NULL AND dist_to_pp_km IS NOT NULL AND<br>dist_toh20_2016_km IS NOT NULL AND per_forest_2016 IS NOT<br>NULL AND IS NOT NULL AND urban_change_01_16 IS NOT NULL AND<br>county_rast IS NOT NULL<br>near ",": syntax error<br>ERROR: Unable to open select cursor<br>Traceback (most recent call last):<br> File "/Users/mitchellmeads/Library/GRASS/7.8/Modules/scrip<br>ts/r.futures.potential", line 221, in <module><br> sys.exit(main())<br> File "/Users/mitchellmeads/Library/GRASS/7.8/Modules/scrip<br>ts/r.futures.potential", line 181, in main<br> gscript.run_command('v.db.select', map=vinput,<br>columns=columns, separator='comma', where=where,<br>file=TMP_CSV)<br> File "/Applications/GRASS-7.8.app/Contents/Resources/etc/p<br>ython/grass/script/core.py", line 441, in run_command<br> return handle_errors(returncode, returncode, args,<br>kwargs)<br> File "/Applications/GRASS-7.8.app/Contents/Resources/etc/p<br>ython/grass/script/core.py", line 342, in handle_errors<br> raise CalledModuleError(module=None, code=code,<br>grass.exceptions.CalledModuleError: Module run None<br>v.db.select map=sampling_f_km@PERMANENT columns=devclip_2016<br>,devpress_0_5_2016,dist_to_evac_km,dist_to_pp_km,dist_toh20_<br>2016_km,per_forest_2016,,urban_change_01_16,county_rast<br>separator=comma where=devclip_2016 IS NOT NULL AND<br>devpress_0_5_2016 IS NOT NULL AND dist_to_evac_km IS NOT<br>NULL AND dist_to_pp_km IS NOT NULL AND dist_toh20_2016_km IS<br>NOT NULL AND per_forest_2016 IS NOT NULL AND IS NOT NULL<br>AND urban_change_01_16 IS NOT NULL AND county_rast IS NOT<br>NULL file=/Volumes/Extreme<br>SSD/grassdata/forecast2/PERMANENT/.tmp/Mitchells-MacBook-<br>Pro.local/49600.0.csv ended with error<br>Process ended with non-zero return code 1. See errors in the<br>(error) output.<br>(Thu Feb 11 14:09:44 2021) Command finished (0 sec) </div><div><br></div><div><br></div><div> <br></div><div><div><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div><font face="arial, sans-serif">Cheers,</font></div><div><font face="arial, sans-serif">Mitchell Meads, PhD Student</font></div><div><font face="arial, sans-serif">Texas A&M University at Galveston</font></div><div><font face="arial, sans-serif">Marine & Coastal Management Sciences; <a href="http://www.tamug.edu/ctbs/" target="_blank">CTBS</a></font></div><div><font face="arial, sans-serif">Email: <a href="mailto:mitchell.meads@tamu.edu" target="_blank">mitchell.meads@tamu.edu</a></font></div><div style="font-family:"trebuchet ms",sans-serif"><br></div><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><span style="font-size:14px"><font face="trebuchet ms, sans-serif"><br></font></span></div><div></div></div></div></div></div></div></div></div></div></div></div><div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Feb 11, 2021 at 2:01 PM Anna Petrášová <<a href="mailto:kratochanna@gmail.com" target="_blank">kratochanna@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Hi Mitchell,</div><div><br></div><div>looking at your command there are several things to fix. Parameter columns should have only the predictors, so for example remove county_rast and urban_change_01_16. Parameter developed_column should be the response variable, so I suppose urban_change_01_16 is the one to use here. Lastly, without the dredge mode only use combination of predictors that are not correlated and don't represent the same info, for example, do not include dist_toh20_2001_km,dist_toh20_2004_km,dist_toh20_2006,dist_toh20_2008_km,dist_toh20_2011_km,dist_toh20_2013_km,dist_toh20_2016_km, since these all represent the same variable (I suppose). Without the dredge mode, all provided predictors will be used in the model, with the dredge mode, it will try different combinations and return the best model.</div><div><br></div><div>Note r.futures.potential is basically just a wrapper around R glmer (lme4) function, so if you are familiar with R, you can experiment with finding a model directly in R if you need more flexibility etc.</div><div><br></div><div>Please keep the conversation on this mailing list which is archived, so that others can add to it or benefit from it later.</div><div><br></div><div>Best,</div><div>Anna</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Feb 11, 2021 at 2:12 PM Mitchell Meads <<a href="mailto:mitchell.meads@tamu.edu" target="_blank">mitchell.meads@tamu.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Anna,<div><br></div><div>I've revisited the r.futures.potential submodel for the futures modeling and I still can't get the r.futures.potential submodel to run. I've rescaled my variables so they all should be on a similar scale but the program is telling me that the variables are still not in appropriate scale along with some other error messages that I have copied below. Please let me know what you think I'm doing wrong.</div><div><br></div><div>(Thu Feb 11 13:11:21 2021) <br>r.futures.potential --overwrite input=sampling_f_km@PERMANENT output=potential_f_km.csv columns=devclip_2016,block_rast,county_rast,devpress_0_5_2016,dist_to_evac_km,dist_to_pp_km,dist_toh20_2001_km,dist_toh20_2004_km,dist_toh20_2006,dist_toh20_2008_km,dist_toh20_2011_km,dist_toh20_2013_km,dist_toh20_2016_km,per_forest_2001,per_forest_2004,per_forest_2006,per_forest_2008,per_forest_2011,per_forest_2013,per_forest_2016,urban_change_01_16 developed_column=devclip_2016 subregions_column=county_rast min_variables=5 max_variables=10<br>Computing model...<br>WARNING: fixed-effect model matrix is rank deficient so dropping 2 columns / coefficients<br>Error in pwrssUpdate(pp, resp, tol = tolPwrss, GQmat = GQmat, compDev = compDev, :<br>pwrssUpdate did not converge in (maxit) iterations<br>Calls: glmer ... <Anonymous> -> <Anonymous> -> stopifnot -> fn -> pwrssUpdate<br>In addition: Warning message:<br>Some predictor variables are on very different scales: consider rescaling<br>Execution halted<br>WARNING: fixed-effect model matrix is rank deficient so dropping 2 columns / coefficients<br>Error in pwrssUpdate(pp, resp, tol = tolPwrss, GQmat = GQmat, compDev = compDev, :<br>pwrssUpdate did not converge in (maxit) iterations<br>Calls: glmer ... <Anonymous> -> <Anonymous> -> stopifnot -> fn -> pwrssUpdate<br>In addition: Warning message:<br>Some predictor variables are on very different scales: consider rescaling<br>Execution halted<br>ERROR: Running R script failed, check messages above<br>(Thu Feb 11 13:11:25 2021) Command finished (3 sec) <br></div><div><br clear="all"><div><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div><font face="arial, sans-serif">Cheers,</font></div><div><font face="arial, sans-serif">Mitchell Meads, PhD Student</font></div><div><font face="arial, sans-serif">Texas A&M University at Galveston</font></div><div><font face="arial, sans-serif">Marine & Coastal Management Sciences; <a href="http://www.tamug.edu/ctbs/" target="_blank">CTBS</a></font></div><div><font face="arial, sans-serif">Email: <a href="mailto:mitchell.meads@tamu.edu" target="_blank">mitchell.meads@tamu.edu</a></font></div><div style="font-family:"trebuchet ms",sans-serif"><br></div><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><span style="font-size:14px"><font face="trebuchet ms, sans-serif"><br></font></span></div><div></div></div></div></div></div></div></div></div></div></div></div><div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Jan 23, 2021 at 9:54 PM Anna Petrášová <<a href="mailto:kratochanna@gmail.com" target="_blank">kratochanna@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Hi Mitchell,</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Jan 22, 2021 at 3:23 PM Mitchell Meads <<a href="mailto:mitchell.meads@tamu.edu" target="_blank">mitchell.meads@tamu.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi all,<div><br></div><div>I'm getting an error when running r.futures.demand that says "Number of development raster maps doesn't not correspond to the number of observed times". I thought that a fix for this would be to make sure my input population csv had years that matched the input raster maps in the first column but this didn't change the error. If you could let me know what you think I'm doing wrong, that would be greatly appreciated!</div></div></blockquote><div><br></div><div>The error means the number of raster maps in the development parameter does not match the number of years in the observed_population CSV. So for example, if you specify development=urban_2001,urban_2006,urban_2011 (3 maps) then the observed_population file should look like this (header + 3 lines):</div><div><br></div><div>year,37037,37063,...<br>2001,19860,10980,...<br>2006,20760,12660,...<br>2011,21070,13090,...<br></div><div><br></div><div>If you can't see any obvious mistake with your data, I would have to see the r.futures.demand command you are trying to execute and the input CSV file.</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><br></div><div><br clear="all"><div><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div><font face="arial, sans-serif">Cheers,</font></div><div><font face="arial, sans-serif">Mitchell</font></div><div style="font-family:"trebuchet ms",sans-serif"><br></div><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><span style="font-size:14px"><font face="trebuchet ms, sans-serif"><br></font></span></div><div></div></div></div></div></div></div></div></div></div></div></div><div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
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