[postgis-users] compiling from source code
Sandeep Gupta
gupta.sandeep at gmail.com
Mon Jul 10 13:50:54 PDT 2017
It is this line exactly:
gcc-4.8 -I../liblwgeom -fpic -I../libpgcommon
-I/home/linuxbrew/.linuxbrew/Cellar/geos/3.6.1/include
-I/home/linuxbrew/.linuxbrew/Cellar/libxml2/2.9.4_3/include/libxml2
-I/home/linuxbrew/.linuxbrew/Cellar/sfcgal/1.3.1/include -DHAVE_SFCGAL
-fPIC -I/home/linuxbrew/.linuxbrew/Cellar/sfcgal/1.3.1/include
-DHAVE_SFCGAL -I. -I./
-I/home/linuxbrew/.linuxbrew/Cellar/postgresql/9.6.3/include/server
-I/home/linuxbrew/.linuxbrew/Cellar/postgresql/9.6.3/include/internal
-I/home/linuxbrew/.linuxbrew/opt/openssl/include
-I/home/linuxbrew/.linuxbrew/opt/readline/include -D_GNU_SOURCE
-I/home/linuxbrew/.linuxbrew/Cellar/libxml2/2.9.4_2/include/libxml2
-c -o postgis_module.o postgis_module.c
On Mon, Jul 10, 2017 at 4:50 PM, Sandeep Gupta <gupta.sandeep at gmail.com> wrote:
> No I didn't used the solution from that post.
> I don't see any mention of 4.8 in any files or in the environment variable.
>
> I started afresh and still end up with gcc-4.8 for linking.
>
>
>
> On Mon, Jul 10, 2017 at 4:38 PM, Regina Obe <lr at pcorp.us> wrote:
>> Perhaps you had set it as part of what the answer described here when experimenting
>>
>> https://stackoverflow.com/questions/23338713/homebrew-how-to-permanently-override-homebrew-cc-homebrew-cxx-env-settings
>>
>> I assume you just need to reset the HOMEBREW_CC HOMEBREW_CX to nothing or what it was before.
>>
>>
>> -----Original Message-----
>> From: postgis-users [mailto:postgis-users-bounces at lists.osgeo.org] On Behalf Of Sandeep Gupta
>> Sent: Monday, July 10, 2017 3:38 PM
>> To: PostGIS Users Discussion <postgis-users at lists.osgeo.org>
>> Subject: Re: [postgis-users] compiling from source code
>>
>> It turned out the problem wasl related to compiling conftest.c:
>>
>> configure:6858: gcc conftest.c
>> conftest.c:14:8: error: unknown type name 'Syntax'
>> Syntax error
>> ^
>> conftest.c:14:8: error: expected '=', ',', ';', 'asm' or '__attribute__' at end of input
>> configure:6858: $? = 1
>> configure: failed program was:
>> | /* confdefs.h */
>> | #define PACKAGE_NAME ""
>> | #define PACKAGE_TARNAME ""
>> | #define PACKAGE_VERSION ""
>> | #define PACKAGE_STRING ""
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE_URL ""
>> | /* end confdefs.h. */
>> | #ifdef __STDC__
>> | # include <limits.h>
>> | #else
>> | # include <assert.h>
>> | #endif
>> | Syntax error
>> configure:6858: gcc conftest.c
>> conftest.c:14:8: error: unknown type name 'Syntax'
>> Syntax error
>> ^
>> conftest.c:14:8: error: expected '=', ',', ';', 'asm' or '__attribute__' at end of input
>> configure:6858: $? = 1
>>
>>
>> It is related to the problem posted here:
>> https://stackoverflow.com/questions/15041937/configure-error-c-preprocessor-fails-sanity-check'
>>
>> Passing -E option as follows fixes the problem ( i am not sure why):
>> ./configure --prefix=/home/linuxbrew/.linuxbrew/Cellar/postgis/2.3.3
>> CC=/home/linuxbrew/.linuxbrew/bin/gcc
>> CXX=/home/linuxbrew/.linuxbrew/bin/g++
>> CPP='/home/linuxbrew/.linuxbrew/bin/g++ -E
>>
>>
>> However the compile fails here (this is for postgis 2.3.3):
>>
>> make[1]: Entering directory
>> '/home/sandeep/.cache/Homebrew/postgis-2.3.3/postgis'
>> gcc-4.8 -I../liblwgeom -fpic -I../libpgcommon -I/home/linuxbrew/.linuxbrew/Cellar/geos/3.6.1/include
>> -I/home/linuxbrew/.linuxbrew/Cellar/libxml2/2.9.4_3/include/libxml2
>> -I/home/linuxbrew/.linuxbrew/Cellar/sfcgal/1.3.1/include -DHAVE_SFCGAL
>> -fPIC -I/home/linuxbrew/.linuxbrew/Cellar/sfcgal/1.3.1/include
>> -DHAVE_SFCGAL -I. -I./
>> -I/home/linuxbrew/.linuxbrew/Cellar/postgresql/9.6.3/include/server
>> -I/home/linuxbrew/.linuxbrew/Cellar/postgresql/9.6.3/include/internal
>> -I/home/linuxbrew/.linuxbrew/opt/openssl/include
>> -I/home/linuxbrew/.linuxbrew/opt/readline/include -D_GNU_SOURCE
>> -I/home/linuxbrew/.linuxbrew/Cellar/libxml2/2.9.4_2/include/libxml2
>> -c -o postgis_module.o postgis_module.c
>> make[1]: gcc-4.8: Command not found
>> <builtin>: recipe for target 'postgis_module.o' failed
>> make[1]: *** [postgis_module.o] Error 127
>>
>>
>> I am not sure why the make is picking up gcc-4.8.
>>
>> Thanks
>> sandeep
>>
>>
>>
>> On Mon, Jul 10, 2017 at 2:42 PM, Regina Obe <lr at pcorp.us> wrote:
>>> Sandeep,
>>>
>>> Sounds like you might be having the same issue described here:
>>>
>>> https://stackoverflow.com/questions/23338713/homebrew-how-to-permanent
>>> ly-override-homebrew-cc-homebrew-cxx-env-settings
>>>
>>> Does the suggested answer work.
>>>
>>> Thanks,
>>> Regina
>>>
>>> -----Original Message-----
>>> From: postgis-users [mailto:postgis-users-bounces at lists.osgeo.org] On
>>> Behalf Of Sandeep Gupta
>>> Sent: Monday, July 10, 2017 2:12 PM
>>> To: PostGIS Users Discussion <postgis-users at lists.osgeo.org>
>>> Subject: Re: [postgis-users] compiling from source code
>>>
>>> Hi Regina,
>>>
>>> I tried several version of postgis (2.3.3, 2.4.0dev, 2.1.8). I have pkg_config installed on my system.
>>>
>>> The error I get is:
>>> checking how to run the C preprocessor... gcc
>>> configure: error: in `/home/sandeep/.cache/Homebrew/postgis-2.3.3':
>>> configure: error: C preprocessor "gcc" fails sanity check
>>>
>>> The configure doesn't proceed after this in my case.
>>>
>>> Is there any temporary workaround that you suggest I can try?
>>>
>>> Thanks.
>>> sandeep
>>>
>>>
>>> On Sat, Jul 8, 2017 at 7:40 PM, Regina Obe <lr at pcorp.us> wrote:
>>>> Sandeep,
>>>>
>>>> Which version of PostGIS are you trying to build? Your configure might be ending for another reason. For example in PostGIS 2.4, I think we now have a dependency on pkg-config which older versions of PostGIS do not. We'll sort this out before PostGIS release, but I think downside at moment, is the it fails if pkg-config is not installed. I forget the exact error you get.
>>>>
>>>> I looked around on net for the -V and from what I can tell, that error is harmless and is just part of the process of configure checking the capabilities of the gcc compile.
>>>> I checked my own config.log and see the same error
>>>>
>>>> configure:2948: x86_64-w64-mingw32-gcc -V >&5
>>>> x86_64-w64-mingw32-gcc.exe: error: unrecognized command line option '-V'
>>>> x86_64-w64-mingw32-gcc.exe: fatal error: no input files compilation
>>>> terminated.
>>>>
>>>> But my configure continues, works fine and in the end shows this:
>>>>
>>>> configure:20134: result:
>>>> configure:20136: result: PostGIS is now configured for x86_64-w64-mingw32
>>>> configure:20138: result:
>>>> configure:20140: result: -------------- Compiler Info -------------
>>>> configure:20142: result: C compiler: x86_64-w64-mingw32-gcc -g -O2
>>>> configure:20144: result: SQL preprocessor: /mingw64/bin/cpp -traditional-cpp -w -P
>>>> configure:20146: result:
>>>> configure:20148: result: -------------- Dependencies --------------
>>>> configure:20150: result: GEOS config: /projects/geos/rel-3.7.0devw64gcc48/bin/geos-config
>>>> configure:20152: result: GEOS version: 3.7.0dev
>>>> configure:20155: result: GDAL config: /projects/gdal/rel-2.2.1w64gcc48/bin/gdal-config
>>>> configure:20157: result: GDAL version: 2.2.1
>>>> configure:20161: result: SFCGAL config: /projects/CGAL/rel-sfcgal-1.3.0w64gcc48/bin/sfcgal-config
>>>> configure:20163: result: SFCGAL version: 1.3.0
>>>> configure:20167: result: PostgreSQL config: /projects/postgresql/rel/pg9.4w64gcc48/bin/pg_config
>>>> configure:20169: result: PostgreSQL version: PostgreSQL 9.4.5
>>>> configure:20175: result: PROJ4 version: 49
>>>> configure:20177: result: Libxml2 config: /projects/libxml/rel-libxml2-2.7.8w64gcc48/bin/xml2-config
>>>> configure:20179: result: Libxml2 version: 2.7.8
>>>> configure:20181: result: JSON-C support: yes
>>>> configure:20183: result: protobuf-c support: yes
>>>> configure:20185: result: PCRE support: yes
>>>> configure:20187: result: PostGIS debug level: 0
>>>> configure:20189: result: Perl: /usr/bin/perl
>>>> configure:20191: result:
>>>> configure:20193: result: --------------- Extensions ---------------
>>>> configure:20196: result: PostGIS Raster: enabled
>>>> configure:20204: result: PostGIS Topology: enabled
>>>> configure:20211: result: SFCGAL support: enabled
>>>> configure:20219: result: Address Standardizer support: enabled
>>>> configure:20225: result:
>>>> configure:20227: result: -------- Documentation Generation --------
>>>> configure:20229: result: xsltproc: /projects/xsltproc/xsltproc
>>>> configure:20231: result: xsl style sheets: /projects/docbook/docbook-xsl-1.76.1
>>>> configure:20233: result: dblatex:
>>>> configure:20235: result: convert: /c/Windows/System32/convert
>>>> configure:20237: result: mathml2.dtd: http://www.w3.org/Math/DTD/mathml2/mathml2.dtd
>>>>
>>>>
>>>>
>>>> Do you get an output anything like this or does it just end after that terminated?
>>>>
>>>> Thanks,
>>>> Regina
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> -----Original Message-----
>>>> From: postgis-users [mailto:postgis-users-bounces at lists.osgeo.org] On
>>>> Behalf Of Sandeep Gupta
>>>> Sent: Friday, July 07, 2017 8:36 PM
>>>> To: PostGIS Users Discussion <postgis-users at lists.osgeo.org>
>>>> Subject: Re: [postgis-users] compiling from source code
>>>>
>>>> Autoconf was missing, so I went ahead install autoconf, automake, and libtool.
>>>>
>>>> Tried recompiling.
>>>>
>>>> sh autogen.sh outputs:
>>>> * Running /home/linuxbrew/.linuxbrew/bin/glibtoolize (2.4.6)
>>>> OPTIONS = --force --copy --install
>>>> glibtoolize: putting auxiliary files in '.'.
>>>> glibtoolize: copying file './config.guess'
>>>> glibtoolize: copying file './config.sub'
>>>> glibtoolize: copying file './install-sh'
>>>> glibtoolize: copying file './ltmain.sh'
>>>> glibtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'macros'.
>>>> glibtoolize: copying file 'macros/libtool.m4'
>>>> glibtoolize: copying file 'macros/ltoptions.m4'
>>>> glibtoolize: copying file 'macros/ltsugar.m4'
>>>> glibtoolize: copying file 'macros/ltversion.m4'
>>>> glibtoolize: copying file 'macros/lt~obsolete.m4'
>>>> glibtoolize: Consider adding '-I macros' to ACLOCAL_AMFLAGS in Makefile.am.
>>>> * Running /home/linuxbrew/.linuxbrew/bin/aclocal (1.15.1)
>>>> * Running /home/linuxbrew/.linuxbrew/bin/autoconf (2.69)
>>>> ======================================
>>>> Now you are ready to run './configure'
>>>> ======================================
>>>>
>>>> This does not solve though. When I run ./configure same error appears with -V flag being the issue.
>>>>
>>>> -sandeep
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Fri, Jul 7, 2017 at 6:33 PM, Regina Obe <lr at pcorp.us> wrote:
>>>>> Okay I just got an irc note from Even Roualt. He is running Ubuntu
>>>>> 16.04 and gcc 5.4 and had no issue running
>>>>>
>>>>> sh autogen.sh
>>>>> ./configure
>>>>>
>>>>> So doesn't seem like it's a newer gcc issue unless if its 5.3 specific.
>>>>>
>>>>> I'm suspecting something with brew, MacOS, or tool chain like autoconf.
>>>>>
>>>>> What does:
>>>>>
>>>>> autoconf --version
>>>>>
>>>>> Return?
>>>>>
>>>>> I get
>>>>>
>>>>> autoconf (GNU Autoconf) 2.69
>>>>> Copyright (C) 2012 Free Software Foundation, Inc.
>>>>> License GPLv3+/Autoconf: GNU GPL version 3 or later
>>>>>
>>>>> Thanks,
>>>>> Regina
>>>>>
>>>>> -----Original Message-----
>>>>> From: postgis-users [mailto:postgis-users-bounces at lists.osgeo.org]
>>>>> On Behalf Of Sandeep Gupta
>>>>> Sent: Friday, July 07, 2017 6:18 PM
>>>>> To: PostGIS Users Discussion <postgis-users at lists.osgeo.org>
>>>>> Subject: Re: [postgis-users] compiling from source code
>>>>>
>>>>> Hi Regina,
>>>>>
>>>>> Here is the output for gcc -v (install gcc from linuxbrew, which port of brew package manager of macOS):
>>>>>
>>>>> Reading specs from
>>>>> /home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-l
>>>>> i
>>>>> n
>>>>> ux-gnu/5.3.0/specs
>>>>> COLLECT_GCC=gcc
>>>>> COLLECT_LTO_WRAPPER=/home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0/libe
>>>>> x e c/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper
>>>>> Target: x86_64-unknown-linux-gnu
>>>>> Configured with: ../configure
>>>>> --prefix=/home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0
>>>>> --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5
>>>>> --with-gmp=/home/linuxbrew/.linuxbrew/opt/gmp
>>>>> --with-mpfr=/home/linuxbrew/.linuxbrew/opt/mpfr
>>>>> --with-mpc=/home/linuxbrew/.linuxbrew/opt/libmpc
>>>>> --with-isl=/home/linuxbrew/.linuxbrew/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.3.0'
>>>>> --with-bugurl=https://github.com/Homebrew/homebrew/issues
>>>>> --enable-plugin --disable-nls --disable-multilib Thread model: posix
>>>>> gcc version 5.3.0 (Homebrew gcc 5.3.0)
>>>>>
>>>>>
>>>>> Thanks.
>>>>> sandeep
>>>>>
>>>>>
>>>>>
>>>>> On Fri, Jul 7, 2017 at 5:52 PM, Regina Obe <lr at pcorp.us> wrote:
>>>>>> Steve and Sandeep,
>>>>>>
>>>>>> Can you try gcc -v instead and let me know what that outputs?
>>>>>>
>>>>>> I just checked our Debian PostGIS bot, and she's running gcc 5.2.1 and think she's running the newest of any of our bots . So I can 't rule out a newer gcc at fault here.
>>>>>> However if I do gcc -V, I get an error on her too, so that's not the issue here:
>>>>>> --
>>>>>>
>>>>>> gcc: error: unrecognized command line option ?~-V ?T
>>>>>> gcc: fatal error: no input files
>>>>>> compilation terminated.
>>>>>>
>>>>>> However, lower case -v (which is what I think configure uses, works just fine).
>>>>>>
>>>>>> gcc -v
>>>>>>
>>>>>> outputs:
>>>>>> Using built-in specs.
>>>>>> COLLECT_GCC=gcc
>>>>>> COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
>>>>>> Target: x86_64-linux-gnu
>>>>>> Configured with: ../src/configure -v --with-pkgversion='Debian
>>>>>> 5.2.1-22' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs
>>>>>> --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++
>>>>>> --prefix=/usr --program-suffix=-5 --enable-shared --ena
>>>>>> jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64
>>>>>> --with-arch-directory=amd64
>>>>>> --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc
>>>>>> --enable-multiarch --with-arch-32=i586 --with-abi=m64
>>>>>> --with-multilib-list=m32,m64,mx32 --enable-m Thread model: posix
>>>>>> gcc version 5.2.1 20151010 (Debian 5.2.1-22)
>>>>>>
>>>>>>
>>>>>> I'm not sure where Sandeep's gcc -V is coming from in configure, cause it looks like gcc -v works fine on his system too, but then somewhere down the line switches to upper case -V which is not a valid switch command even in lower gcc versions.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> Thanks,
>>>>>> Regina
>>>>>>
>>>>>> -----
>>>>>> From: Stephen Woodbridge Date: Fri, Jul 7, 2017 at 2:09 PM
>>>>>>
>>>>>>
>>>>>>
>>>>>> I get the same error running on Ubuntu 16.04 with:
>>>>>>
>>>>>> $ gcc -V
>>>>>> gcc: error: unrecognized command line option -V
>>>>>> gcc: fatal error: no input files
>>>>>> compilation terminated.
>>>>>>
>>>>>> Looks like the option should be --version $ gcc --version gcc
>>>>>> (Ubuntu
>>>>>> 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609 Copyright (C) 2015 Free
>>>>>> Software Foundation, Inc.
>>>>>> This is free software; see the source for copying conditions.
>>>>>> There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>>>>>>
>>>>>> -Steve
>>>>>>
>>>>>> On 7/7/2017 1:51 PM, Sandeep Gupta wrote:
>>>>>> Hi,
>>>>>>
>>>>>> I am using gcc version 5.3 to compile postgis on Fedora.
>>>>>> The compile fails at the configure step.
>>>>>>
>>>>>> I get the error:
>>>>>>
>>>>>> configure: error: C preprocessor "gcc" fails sanity check See
>>>>>> `config.log' for more details
>>>>>>
>>>>>> The relevant line in config.log:
>>>>>> configure:3031: gcc -v >&5
>>>>>> Reading specs from
>>>>>> /home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0/lib/gcc/x86_64-unknown-
>>>>>> l
>>>>>> i
>>>>>> n
>>>>>> ux-gnu/5.3.0/specs
>>>>>> COLLECT_GCC=gcc
>>>>>> COLLECT_LTO_WRAPPER=/home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0/lib
>>>>>> e x e c/gcc/x86_64-unknown-linux-gnu/5.3.0/lto-wrapper
>>>>>> Target: x86_64-unknown-linux-gnu
>>>>>> Configured with: ../configure
>>>>>> --prefix=/home/linuxbrew/.linuxbrew/Cellar/gcc/5.3.0
>>>>>> --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5
>>>>>> --with-gmp=/home/linuxbrew/.linuxbrew/opt/gmp
>>>>>> --with-mpfr=/home/linuxbrew/.linuxbrew/opt/mpfr
>>>>>> --with-mpc=/home/linuxbrew/.linuxbrew/opt/libmpc
>>>>>> --with-isl=/home/linuxbrew/.linuxbrew/opt/isl --with-system-zlib
>>>>>> --enable-libstdcxx-time=yes --enable-stage1-checking
>>>>>> --enable-checking=release --enable-lto
>>>>>> --with-build-config=bootstrap-debug --disable-werror
>>>>>> --with-pkgversion='Homebrew gcc 5.3.0'
>>>>>> --with-bugurl=https://github.com/Homebrew/homebrew/issues
>>>>>> --enable-plugin --disable-nls --disable-multilib Thread model:
>>>>>> posix gcc version 5.3.0 (Homebrew gcc 5.3.0)
>>>>>> configure:3042: $? = 0
>>>>>> configure:3031: gcc -V >&5
>>>>>> gcc: error: unrecognized command line option '-V'
>>>>>> gcc: fatal error: no input files
>>>>>> compilation terminated.
>>>>>>
>>>>>>
>>>>>>
>>>>>> It seems gcc does not like "-V" option. I this a issue to with
>>>>>> later gcc versions?
>>>>>>
>>>>>> Thanks.
>>>>>> sandeep
>>>>>> _______________________________________________
>>>>>> postgis-users mailing list
>>>>>> postgis-users at lists.osgeo.org
>>>>>> https://lists.osgeo.org/mailman/listinfo/postgis-users
>>>>>>
>>>>>>
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>>>>>>
>>>>>>
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