[gdal-dev] Re: gdal segmentation fault when reading NetCDF grid files

[Even Rouault]

Just to mention that you could have kept hdf5 as it is unrelated to the 
netcdf / hdf4 issue

Le Monday 24 November 2008 20:57:51 Roger André, vous avez écrit :
> Sorry, should have trolled the Web first.  I see now that this is nothing
> new, and is caused by a conflict between libnetcdf and libhdf4/5.  I've
> resolved this by doing the following:
>
> 1. Removing all hdf libs from my system:
> $ sudo apt-get remove libhdf4g libhdf4g-dev libhdf5-serial-1.6.5-0
> libhdf5-serial-dev
>
> 2. Doing a "sudo make clean" in my /usr/local/gdal dir
>
> 3. Doing a new configure with "--with-hdf4=no --with-hdf5=no", then running
> make.
>
> Seems to work now,
>
> Thanks.
> --
>
> On Mon, Nov 24, 2008 at 10:07 AM, Roger André <randre at gmail.com> wrote:
> > Hi everyone,
> >
> > I'm having some problems getting gdal to read netCDF grid files using
> > gdal-1.5.2 which I have built from source.  It is running on an Ubuntu
> > 8.04 machine, and was built after the following dependencies were
> > installed:
> >
> >     $ sudo apt-get install libnetcdf4 libnetcdf-dev netcdfg-dev
> > netcdf-doc libhdf4g libhdf4g-dev libhdf5-serial-1.6.5-0
> > libhdf5-serial-1.6.5-0 libhdf5-serial-dev
> >
> > I built gdal with the following options:
> >
> >     $ sudo ./configure --with-libz
> > --with-pg=/usr/local/pgsql/bin/pg_config --with-netcdf --with-png
> > --with-geotiff --with-jpeg --with-gif --with-hdf4 --with-hdf5
> > --with-jasper --with-geos=/usr/local/bin/geos-config --with-python
> >
> > When I try to open the file with gdalinfo, I get the following seg fault
> > in /var/log/syslog:
> >
> >     Nov 24 09:42:34 randre-linux kernel: [ 1921.499150] gdalinfo[6971]:
> > segfault at 00001031 eip b713d886 esp bfefb390 error 4
> >
> > The same file can be opened with no problem using gdalinfo from
> > FWTools-2.0.6
> >
> > Is it possible I am missing some netCDF/HDF fu needed for gdal to work
> > with these sorts of files?
> >
> > Thanks in advance for any suggestions,
> >
> > Roger
> > --