[gdal-dev] GDAL / Java bindings : undefined symbol: _ZTVN10cxxabiv120si_class_type_infoE in libgdal.so.1

Sun Sep 23 23:45:29 PDT 2012

Hi Even,

I finally found the cause of the issue.

If I build the 1.9 branch from https://svn.osgeo.org/gdal/branches/1.9/gdal
it builds OK and printing shared libraries (such as ldd -d -r libgdal.so or ldd -d -r libgdaljni.so) are OK too.

If I build the latest trunk from https://svn.osgeo.org/gdal/trunk/
it builds OK but printing shared libraries (such as ldd -d -r libgdal.so or ldd -d -r libgdaljni.so) are having undefined symbol issues below.

So obviously something is broken in the latest trunk but not sure what.

Could someone please help me log a ticket for this bug. It is so annoying and if someone could point out why this is not capture that would be great.

Regards,

Hendy

----- Original Message -----
> From: "Hendy Sumanto" <hsumanto at vpac.org>
> To: "Even Rouault" <even.rouault at mines-paris.org>
> Cc: "gdal-dev" <gdal-dev at lists.osgeo.org>
> Sent: Monday, 24 September, 2012 9:39:47 AM
> Subject: Re: [gdal-dev] GDAL / Java bindings : undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE in
> libgdal.so.1
> Tried including the /home/579/hxs579/apps/gdal-trunk/lib into my
> LD_LIBRARY_PATH but still encountering the same issue.
> 
> $ export
> LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/579/hxs579/apps/gdal-trunk/lib:/home/579/hxs579/local/gdal-trunk/gdal/swig/java
> $ java -classpath
> '/home/579/hxs579/local/gdal-trunk/gdal/swig/java/gdal.jar':/home/579/hxs579/local/gdal-trunk/gdal/swig/java/apps
> gdalinfo
> Native library load failed.
> java.lang.UnsatisfiedLinkError:
> /home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so:
> /home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1: undefined symbol:
> _ZTVN10__cxxabiv120__si_class_type_infoE
> Exception in thread "main" java.lang.UnsatisfiedLinkError:
> org.gdal.gdal.gdalJNI.AllRegister()V
> at org.gdal.gdal.gdalJNI.AllRegister(Native Method)
> at org.gdal.gdal.gdal.AllRegister(gdal.java:479)
> at gdalinfo.main(gdalinfo.java:87)
> 
> When printing shared library dependencies, I managed to reproduce the
> same issue.
> Don't have the same issue on the GDAL Java bindings on Ubuntu machine.
> 
> $ ldd -d -r /home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so
> linux-vdso.so.1 => (0x00007fff527ff000)
> libgdal.so.1 => /home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1
> (0x00007f05d1654000)
> libnetcdf.so.6 => /usr/lib64/libnetcdf.so.6 (0x00007f05d1303000)
> libhdf5.so.6 => /usr/lib64/libhdf5.so.6 (0x00007f05d0d1b000)
> libpq.so.5 => /usr/lib64/libpq.so.5 (0x00007f05d0af3000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f05d08d6000)
> libm.so.6 => /lib64/libm.so.6 (0x00007f05d0652000)
> librt.so.1 => /lib64/librt.so.1 (0x00007f05d044a000)
> libdl.so.2 => /lib64/libdl.so.2 (0x00007f05d0245000)
> libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00007f05cfff2000)
> libc.so.6 => /lib64/libc.so.6 (0x00007f05cfc62000)
> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f05cfa4b000)
> libhdf5_hl.so.6 => /usr/lib64/libhdf5_hl.so.6 (0x00007f05cf819000)
> libz.so.1 => /lib64/libz.so.1 (0x00007f05cf603000)
> libssl.so.10 => /usr/lib64/libssl.so.10 (0x00007f05cf3a7000)
> libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x00007f05cf00d000)
> libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00007f05cedcb000)
> libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f05ceb93000)
> libldap_r-2.4.so.2 => /lib64/libldap_r-2.4.so.2 (0x00007f05ce940000)
> /lib64/ld-linux-x86-64.so.2 (0x0000003ee4200000)
> libidn.so.11 => /lib64/libidn.so.11 (0x00007f05ce70e000)
> libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00007f05ce4c2000)
> libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00007f05ce1e3000)
> libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00007f05cdfb7000)
> libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007f05cddb2000)
> libssl3.so => /usr/lib64/libssl3.so (0x00007f05cdb77000)
> libsmime3.so => /usr/lib64/libsmime3.so (0x00007f05cd94b000)
> libnss3.so => /usr/lib64/libnss3.so (0x00007f05cd60f000)
> libnssutil3.so => /usr/lib64/libnssutil3.so (0x00007f05cd3e9000)
> libplds4.so => /lib64/libplds4.so (0x00007f05cd1e5000)
> libplc4.so => /lib64/libplc4.so (0x00007f05ccfdf000)
> libnspr4.so => /lib64/libnspr4.so (0x00007f05ccda2000)
> libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x00007f05ccb7b000)
> libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x00007f05cc96f000)
> libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007f05cc76c000)
> libresolv.so.2 => /lib64/libresolv.so.2 (0x00007f05cc552000)
> libfreebl3.so => /lib64/libfreebl3.so (0x00007f05cc2ef000)
> liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x00007f05cc0e0000)
> libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x00007f05cbec6000)
> libselinux.so.1 => /lib64/libselinux.so.1 (0x00007f05cbca6000)
> undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_pure_virtual
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVN10__cxxabiv121__vmi_class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTISt9exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVSt15basic_streambufIcSt11char_traitsIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVSt9exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVSt18basic_stringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZTVSt19basic_ostringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTIPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt4cerr
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt8ios_base4InitD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVSt9basic_iosIcSt11char_traitsIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTTSt18basic_stringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZTTSt19basic_ostringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVSt15basic_stringbufIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs4_Rep20_S_empty_rep_storageE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __gxx_personality_v0
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs9push_backEc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs12find_last_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt15basic_streambufIcSt11char_traitsIcEED2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6assignERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSi10_M_extractIdEERSiRT_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt6localeD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZStlsISt11char_traitsIcEERSt13basic_ostreamIcT_ES5_PKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_rethrow
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs7compareEPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsC1EPKcmRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZdaPv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs7compareERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs17find_first_not_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt8ios_base4InitC1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6assignEPKcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _Znwm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt17__throw_bad_allocv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt18_Rb_tree_incrementPSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs4findEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZSt16__ostream_insertIcSt11char_traitsIcEERSt13basic_ostreamIT_T0_ES6_PKS3_l
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt20__throw_out_of_rangePKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_throw
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZNSt9basic_iosIcSt11char_traitsIcEE4initEPSt15basic_streambufIcS1_E
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6appendEPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZdlPv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6resizeEm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs4_Rep10_M_destroyERKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsD2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt9basic_iosIcSt11char_traitsIcEED2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs17find_first_not_ofEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt18_Rb_tree_decrementPKSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt9terminatev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt9exceptionD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_free_exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6appendERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs14_M_replace_auxEmmmc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_get_exception_ptr
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZSt28_Rb_tree_rebalance_for_erasePSt18_Rb_tree_node_baseRS_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs16find_last_not_ofEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsC2ERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_guard_abort
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSo9_M_insertIdEERSoT_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt8ios_baseC2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs12_M_leak_hardEv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_guard_acquire
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs7replaceEmmPKcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6appendEmc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_begin_catch
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6resizeEmc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6appendEPKcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZSt29_Rb_tree_insert_and_rebalancebPSt18_Rb_tree_node_baseS0_RS_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs9_M_mutateEmmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZNKSt15basic_stringbufIcSt11char_traitsIcESaIcEE3strEv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs7_M_leakEv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_end_catch
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs5rfindEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_guard_release
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs6substrEmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs7replaceEmmPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt15_List_node_base4hookEPS_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs7reserveEm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __cxa_allocate_exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsC2EPKcRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt8ios_baseD2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt18_Rb_tree_decrementPSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs4_Rep9_S_createEmmRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSolsEi
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _Znam
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: __dynamic_cast
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt18_Rb_tree_incrementPKSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZNSt19basic_ostringstreamIcSt11char_traitsIcESaIcEED1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs13find_first_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt20__throw_length_errorPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZNSt15basic_stringbufIcSt11char_traitsIcESaIcEE7_M_syncEPcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs2atEm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs4findEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZNSt9basic_iosIcSt11char_traitsIcEE5clearESt12_Ios_Iostate
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol:
> _ZNSt18basic_stringstreamIcSt11char_traitsIcESaIcEED1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsC1EPKcRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZSt19__throw_logic_errorPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs5rfindEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt9exceptionD2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsC1ERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSt6localeC1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSsC1ERKSsmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNSs6assignEPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZNKSs16find_last_not_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1)
> undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> undefined symbol: _ZNSt8ios_base4InitD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> undefined symbol: __gxx_personality_v0
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> undefined symbol: _ZNSt8ios_base4InitC1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> undefined symbol: _Znwm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> undefined symbol: _ZdlPv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> undefined symbol: _Znam
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdaljni.so)
> 
> 
> Printing libgdal.so dependencies, also encountering the same issue
> below:
> 
> $ ldd -d -r /home/579/hxs579/apps/gdal-trunk/lib/libgdal.so
> linux-vdso.so.1 => (0x00007ffff39ff000)
> libnetcdf.so.6 => /usr/lib64/libnetcdf.so.6 (0x00007fb65639b000)
> libhdf5.so.6 => /usr/lib64/libhdf5.so.6 (0x00007fb655db2000)
> libpq.so.5 => /usr/lib64/libpq.so.5 (0x00007fb655b8a000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fb65596e000)
> libm.so.6 => /lib64/libm.so.6 (0x00007fb6556e9000)
> librt.so.1 => /lib64/librt.so.1 (0x00007fb6554e1000)
> libdl.so.2 => /lib64/libdl.so.2 (0x00007fb6552dd000)
> libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00007fb655089000)
> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007fb654e73000)
> libc.so.6 => /lib64/libc.so.6 (0x00007fb654ae3000)
> libhdf5_hl.so.6 => /usr/lib64/libhdf5_hl.so.6 (0x00007fb6548b0000)
> libz.so.1 => /lib64/libz.so.1 (0x00007fb65469a000)
> libssl.so.10 => /usr/lib64/libssl.so.10 (0x00007fb65443f000)
> libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x00007fb6540a4000)
> libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00007fb653e62000)
> libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007fb653c2b000)
> libldap_r-2.4.so.2 => /lib64/libldap_r-2.4.so.2 (0x00007fb6539d7000)
> /lib64/ld-linux-x86-64.so.2 (0x0000003ee4200000)
> libidn.so.11 => /lib64/libidn.so.11 (0x00007fb6537a5000)
> libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00007fb65355a000)
> libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00007fb65327a000)
> libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00007fb65304e000)
> libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007fb652e4a000)
> libssl3.so => /usr/lib64/libssl3.so (0x00007fb652c0e000)
> libsmime3.so => /usr/lib64/libsmime3.so (0x00007fb6529e2000)
> libnss3.so => /usr/lib64/libnss3.so (0x00007fb6526a7000)
> libnssutil3.so => /usr/lib64/libnssutil3.so (0x00007fb652480000)
> libplds4.so => /lib64/libplds4.so (0x00007fb65227c000)
> libplc4.so => /lib64/libplc4.so (0x00007fb652077000)
> libnspr4.so => /lib64/libnspr4.so (0x00007fb651e39000)
> libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x00007fb651c12000)
> libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x00007fb651a06000)
> libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007fb651803000)
> libresolv.so.2 => /lib64/libresolv.so.2 (0x00007fb6515e9000)
> libfreebl3.so => /lib64/libfreebl3.so (0x00007fb651386000)
> liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x00007fb651177000)
> libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x00007fb650f5d000)
> libselinux.so.1 => /lib64/libselinux.so.1 (0x00007fb650d3d000)
> undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTVN10__cxxabiv117__class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_pure_virtual
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTVN10__cxxabiv121__vmi_class_type_infoE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTISt9exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTVSt15basic_streambufIcSt11char_traitsIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTVSt9exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTVSt18basic_stringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZTVSt19basic_ostringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTIPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt4cerr
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt8ios_base4InitD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTVSt9basic_iosIcSt11char_traitsIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTTSt18basic_stringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZTTSt19basic_ostringstreamIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZTVSt15basic_stringbufIcSt11char_traitsIcESaIcEE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs4_Rep20_S_empty_rep_storageE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __gxx_personality_v0
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs9push_backEc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs12find_last_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt15basic_streambufIcSt11char_traitsIcEED2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6assignERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSi10_M_extractIdEERSiRT_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt6localeD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZStlsISt11char_traitsIcEERSt13basic_ostreamIcT_ES5_PKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_rethrow
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs7compareEPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsC1EPKcmRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZdaPv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs7compareERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs17find_first_not_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt8ios_base4InitC1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6assignEPKcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _Znwm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt17__throw_bad_allocv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt18_Rb_tree_incrementPSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs4findEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZSt16__ostream_insertIcSt11char_traitsIcEERSt13basic_ostreamIT_T0_ES6_PKS3_l
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt20__throw_out_of_rangePKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_throw
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZNSt9basic_iosIcSt11char_traitsIcEE4initEPSt15basic_streambufIcS1_E
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6appendEPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZdlPv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6resizeEm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs4_Rep10_M_destroyERKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsD2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt9basic_iosIcSt11char_traitsIcEED2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs17find_first_not_ofEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt18_Rb_tree_decrementPKSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt9terminatev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt9exceptionD1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_free_exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6appendERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs14_M_replace_auxEmmmc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_get_exception_ptr
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZSt28_Rb_tree_rebalance_for_erasePSt18_Rb_tree_node_baseRS_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs16find_last_not_ofEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsC2ERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_guard_abort
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSo9_M_insertIdEERSoT_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt8ios_baseC2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs12_M_leak_hardEv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_guard_acquire
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs7replaceEmmPKcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6appendEmc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_begin_catch
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6resizeEmc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6appendEPKcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZSt29_Rb_tree_insert_and_rebalancebPSt18_Rb_tree_node_baseS0_RS_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs9_M_mutateEmmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZNKSt15basic_stringbufIcSt11char_traitsIcESaIcEE3strEv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs7_M_leakEv
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_end_catch
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs5rfindEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_guard_release
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs6substrEmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs7replaceEmmPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt15_List_node_base4hookEPS_
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs7reserveEm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __cxa_allocate_exception
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsC2EPKcRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt8ios_baseD2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt18_Rb_tree_decrementPSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs4_Rep9_S_createEmmRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSolsEi
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _Znam
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: __dynamic_cast
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt18_Rb_tree_incrementPKSt18_Rb_tree_node_base
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZNSt19basic_ostringstreamIcSt11char_traitsIcESaIcEED1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs13find_first_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt20__throw_length_errorPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZNSt15basic_stringbufIcSt11char_traitsIcESaIcEE7_M_syncEPcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs2atEm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs4findEcm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZNSt9basic_iosIcSt11char_traitsIcEE5clearESt12_Ios_Iostate
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol:
> _ZNSt18basic_stringstreamIcSt11char_traitsIcESaIcEED1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsC1EPKcRKSaIcE
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZSt19__throw_logic_errorPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs5rfindEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt9exceptionD2Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsC1ERKSs
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSt6localeC1Ev
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSsC1ERKSsmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNSs6assignEPKc
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> undefined symbol: _ZNKSs16find_last_not_ofEPKcmm
> (/home/579/hxs579/apps/gdal-trunk/lib/libgdal.so)
> 
> 
> ----- Original Message -----
> > From: "Even Rouault" <even.rouault at mines-paris.org>
> > To: "Hendy Sumanto" <hsumanto at vpac.org>
> > Cc: "gdal-dev" <gdal-dev at lists.osgeo.org>
> > Sent: Friday, 21 September, 2012 9:23:44 PM
> > Subject: Re: [gdal-dev] GDAL / Java bindings : undefined symbol:
> > _ZTVN10__cxxabiv120__si_class_type_infoE in
> > libgdal.so.1
> > Seeing
> >
> > > java.lang.UnsatisfiedLinkError:
> > > /home/579/hxs579/local/gdal-trunk/gdal/swig/java/libgdaljni.so:
> > > /home/579/hxs579/apps/gdal-trunk/lib/libgdal.so.1: undefined
> > > symbol:
> >
> > You need to add /home/579/hxs579/apps/gdal-trunk/lib in your
> > LD_LIBRARY_PATH too
> > (in addition to the existing values in it).
> >
> > Reading
> > http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildInstructionsUnix ,
> > I
> > see it wasn't mentionned.

-- 
Hendy Sumanto
Software Engineer

Victorian Partnership for Advanced Computing (VPAC)
Innovation Powered by Advanced Computing
http://www.vpac.org
t: +61 3 9925 8340
f: +61 3 9646 7787

[gdal-dev] GDAL / Java bindings : undefined symbol: _ZTVN10__cxxabiv120__si_class_type_infoE in libgdal.so.1

[gdal-dev] GDAL / Java bindings : undefined symbol: _ZTVN10cxxabiv120si_class_type_infoE in libgdal.so.1