[gdal-dev] QGIS from OSGeo4W crashes with latest update on NetCDF
Pedro Venâncio
pedrongvenancio at gmail.com
Tue Oct 20 08:12:56 PDT 2020
Hi Joaquim Luís,
This is an IPMA NetCDF, it was working before the update.
And I think it is in fact a HDF5 library version problem:
> gdalinfo AROME_OPER_001_FC_SP_PT2_025_RH_2-HTGL_2020102000.nc
Warning 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid
argument".
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application
continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.10.4, library is 1.10.5
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
-------------------
HDF5 Version: 1.10.5
Configured on: 2020-10-19
Configured by: Visual Studio 14 2015 Win64
Host system: Windows-10.0.19041
Uname information: Windows
Byte sex: little-endian
Installation point:
D:/src/osgeo4w64/src/hdf5/osgeo4w/install-x86_64
Compiling Options:
------------------
Build Mode:
Debugging Symbols:
Asserts:
Profiling:
Optimization Level:
Linking Options:
----------------
Libraries:
Statically Linked Executables: OFF
LDFLAGS: /machine:x64
H5_LDFLAGS:
AM_LDFLAGS:
Extra libraries:
Archiver:
Ranlib:
Languages:
----------
C: yes
C Compiler: C:/Program Files (x86)/Microsoft Visual
Studio 14.0/VC/bin/x86_amd64/cl.exe 19.0.24215.1
CPPFLAGS:
H5_CPPFLAGS:
AM_CPPFLAGS:
CFLAGS: /DWIN32 /D_WINDOWS /W3
H5_CFLAGS:
AM_CFLAGS:
Shared C Library: YES
Static C Library: YES
Fortran: OFF
Fortran Compiler:
Fortran Flags:
H5 Fortran Flags:
AM Fortran Flags:
Shared Fortran Library: YES
Static Fortran Library: YES
C++: ON
C++ Compiler: C:/Program Files (x86)/Microsoft Visual
Studio 14.0/VC/bin/x86_amd64/cl.exe 19.0.24215.1
C++ Flags: /DWIN32 /D_WINDOWS /W3 /GR /EHsc
H5 C++ Flags:
AM C++ Flags:
Shared C++ Library: YES
Static C++ Library: YES
JAVA: OFF
JAVA Compiler:
Features:
---------
Parallel HDF5: OFF
Parallel Filtered Dataset Writes:
Large Parallel I/O:
High-level library: ON
Threadsafety: ON
Default API mapping: v110
With deprecated public symbols: ON
I/O filters (external): DEFLATE DECODE
MPE:
Direct VFD:
dmalloc:
Packages w/ extra debug output:
API Tracing: OFF
Using memory checker: OFF
Memory allocation sanity checks: OFF
Function Stack Tracing: OFF
Strict File Format Checks: OFF
Optimization Instrumentation:
Bye...
Joaquim Manuel Freire Luís <jluis at ualg.pt> escreveu no dia terça,
20/10/2020 à(s) 15:36:
> But I do find something strange in that nc file. Mirone (Matlab
> independent nc loader) errors when trying to load it because of the
> “Conventions” attribute and HDF-Explorer says it’s a “4-byte
> null-terminated ASCII string” when in fact that attribute has 6-bytes
>
> “CF-1.5”
>
>
>
> *From:* Joaquim Manuel Freire Luís
> *Sent:* Tuesday, October 20, 2020 3:00 PM
> *To:* 'Pedro Venâncio' <pedrongvenancio at gmail.com>; qgis-developer <
> qgis-developer at lists.osgeo.org>; gdal-dev at lists.osgeo.org
> *Subject:* RE: [gdal-dev] QGIS from OSGeo4W crashes with latest update on
> NetCDF
>
>
>
> Pedro,
>
>
>
> Probably a netcdf lib related issue. I have a very fresh GDAL build (from
> yesterday’s master) and can access that file. Either from GDAL or GMT, but
> my nc lib has not been updated for some time (which is not so bad as nc has
> had a couple of issues in recent past).
>
>
>
> *From:* gdal-dev <gdal-dev-bounces at lists.osgeo.org> *On Behalf Of *Pedro
> Venâncio
> *Sent:* Tuesday, October 20, 2020 1:58 PM
> *To:* qgis-developer <qgis-developer at lists.osgeo.org>;
> gdal-dev at lists.osgeo.org
> *Subject:* [gdal-dev] QGIS from OSGeo4W crashes with latest update on
> NetCDF
>
>
>
> Hi all,
>
>
>
> Sorry about the cross posting but today, after the update of OSGeo4W to
> qgis-dev 3.15.0-82, I get a QGIS crash both with qgis-dev, qgis-ltr-dev
> 3.10.10-3 and qgis-rel-dev 3.14.16-3.
>
>
>
> I've only looked at Desktop updates and so I cannot say what libs were
> updated at the same time.
>
>
>
> The crash happens when I try to open some NetCDF file (for instance
> http://mf2.ipma.pt/downloads/?latest=arome.2m.relative_humidity®ion=PT2
> ) as raster file, as mesh layer or simply when I open a folder with a
> NetCDF file inside Browser.
>
>
>
> This is something like this one: https://issues.qgis.org/issues/21162
>
>
>
> As it only happens with QGIS "-dev" versions, I believe it can be related
> with GDAL 3.2.0dev, but I cannot say what version I had before this update,
> maybe from one week or two ago.
>
>
>
> Can someone reproduce?
>
>
>
> Another issue with QGIS "-dev" versions is related to GRASS. I get this
> error message on QGIS initialization, and then I cannot, for instance,
> create a new mapset with GRASS Plugin:
>
>
>
> GRASS init error: Problem in GRASS initialization, GRASS provider and
> plugin will not work : Module built against version 8bcecc9a6 but trying to
> use version d8fbd49af. You need to rebuild GRASS GIS or untangle multiple
> installations.
>
>
>
> I can open two different tickets, but I'm not certain about the right
> place to open them.
>
>
>
> Thanks!
>
>
>
> Best regards,
>
> Pedro Venâncio
>
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