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<p class="MsoNormal"><span lang="ES" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="ES" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I reduced the amount of memory requested. I could do that because I am developing the driver that failed.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">After my mail I discovered another error, so, perhaps, this was the real cause.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">4Mb it’s so small, so I is not the cause...
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Perhaps you can add --config CPL_DEBUG ON at your command line to see if this give you more information about the place
where it crashes.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I’m sorry not being able to help you more.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Perhaps you can send me the shape and the command line to see if it crashes in my computer and I can find out the problem.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">See you<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal" align="left" style="text-align:left"><b><span lang="ES" style="font-size:11.0pt;font-family:"Calibri",sans-serif">De:</span></b><span lang="ES" style="font-size:11.0pt;font-family:"Calibri",sans-serif">
</span><span style="font-size:11.0pt;font-family:"MS Gothic"">寛座 智大</span><span lang="ES" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> <tomohiro.kanza.306@baycurrent.co.jp>
<br>
<b>Enviado el:</b> dimecres, 6 de març de 2024 7:20<br>
<b>Para:</b> Abel Pau <a.pau@creaf.uab.cat>; gdal-dev@lists.osgeo.org<br>
<b>Asunto:</b> RE: Segmentation fault (core dumped) occurs when running ogr2ogr command on container<o:p></o:p></span></p>
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<p class="MsoNormal" align="left" style="text-align:left"><o:p> </o:p></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Abel Pau,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Hi. Thank you for your response.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">>I reduced this capacity 10 times and it worked.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Does this mean you reduced the size of the Shape file?
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Or does it mean that you reduced the amount of memory requested?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">(</span><span lang="EN-US" style="mso-fareast-language:JA">
</span><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">If it's the latter, I'd like to learn how to do it.)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Shape files are typically around 4MB, so I don't consider them to be very large files.
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Additionally, I tried it on an AKS with a free memory size of over 20GB, but encountered the same issue.
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">It seems unlikely that there is a lack of specifications in the execution environment.
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Could the issue possibly be due to a bug in the command?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
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<p class="MsoNormal" align="left" style="text-align:left"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:JA">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:JA">
Abel Pau <<a href="mailto:a.pau@creaf.uab.cat">a.pau@creaf.uab.cat</a>> <br>
<b>Sent:</b> Monday, March 4, 2024 4:57 PM<br>
<b>To:</b> </span><span lang="JA" style="font-size:11.0pt;font-family:"MS PGothic",sans-serif;mso-fareast-language:JA">寛座 智大</span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:JA"> <<a href="mailto:tomohiro.kanza.306@baycurrent.co.jp">tomohiro.kanza.306@baycurrent.co.jp</a>><br>
<b>Subject:</b> RE: Segmentation fault (core dumped) occurs when running ogr2ogr command on container<o:p></o:p></span></p>
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<p class="MsoNormal" align="left" style="text-align:left"><span lang="EN-US" style="mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I did similar tests with a driver I am implementing and I obtained exact the same behavior as yours.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">After a few speculations I deduced that my driver was asking for too much memory for the docker capacity.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I reduced this capacity 10 times and it worked.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">So, perhaps, Shape or Geojson asks for too much memory for the docker capacity.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">I don’t know if it’s possible to make it bigger.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Abel.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal" align="left" style="text-align:left"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:JA">De:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:JA">
gdal-dev <</span><span lang="EN-US" style="mso-fareast-language:JA"><a href="mailto:gdal-dev-bounces@lists.osgeo.org"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">gdal-dev-bounces@lists.osgeo.org</span></a></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:JA">>
<b>En nombre de </b>?? ?? via gdal-dev<br>
<b>Enviado el:</b> dilluns, 4 de març de 2024 3:30<br>
<b>Para:</b> </span><span lang="EN-US" style="mso-fareast-language:JA"><a href="mailto:gdal-dev@lists.osgeo.org"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">gdal-dev@lists.osgeo.org</span></a></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-language:JA"><br>
<b>Asunto:</b> [gdal-dev] Segmentation fault (core dumped) occurs when running ogr2ogr command on container<o:p></o:p></span></p>
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<p class="MsoNormal" align="left" style="text-align:left"><span style="mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">I am implementing batch processing to convert Shape files, publicly available as open data,<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">into Geojson format within a container environment.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">I installed gdal-bin on top of ubuntu:22.04 base image.
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">The Dockerfile I implemented is as follows:<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">```<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">FROM ubuntu:22.04<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">ENV DEBIAN_FRONTEND=noninteractive<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">RUN apt update<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">RUN apt -y install apt-transport-https jq unzip openjdk-17-jdk-headless curl<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"># Install gdal-bin<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"># Reference:
</span><span lang="EN-US" style="mso-fareast-language:JA"><a href="https://mothergeo-py.readthedocs.io/en/latest/development/how-to/gdal-ubuntu-pkg.html#how-to-install-gdal-ogr-packages-on-ubuntu"><span style="font-size:11.0pt">https://mothergeo-py.readthedocs.io/en/latest/development/how-to/gdal-ubuntu-pkg.html#how-to-install-gdal-ogr-packages-on-ubuntu</span></a></span><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">RUN apt -y install software-properties-common<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">RUN add-apt-repository -y ppa:ubuntugis/ppa<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">RUN apt update<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">RUN apt -y install gdal-bin<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">COPY ./convert.sh /convert.sh<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">CMD ["bash","convert.sh"]<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">```<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">When executing the ogr2ogr command within convert.sh, the following error occurs:<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">```<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Shape: DBF Codepage = SJIS for /d1.shp<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Shape: Treating as encoding 'MS932'.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">GDAL: GDALOpen(/d1.shp, this=0x55f1edd77f30) succeeds as ESRI Shapefile.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">GDAL: QuietDelete(/d1_raw.geojson) invoking Delete()<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">GDAL: GDALDriver::Create(GeoJSON,/d1_raw.geojson,0,0,0,Unknown,(nil))<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">GDALVectorTranslate: 5315 features written in layer 'd1'<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Shape: 5315 features read on layer 'd1'.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">GDAL: GDALClose(/d1.shp, this=0x55f1edd77f30)<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">GDAL: GDALClose(/d1_raw.geojson, this=0x55f1edd75fd0)<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">GDAL: In GDALDestroy - unloading GDAL shared library.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Segmentation fault (core dumped)<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">```<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">I checked if convert.sh execution is possible on the VM (host OS running Docker).<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">The error seems to occur only when executed within the container.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">How should I resolve this?<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="JA" style="font-size:11.0pt;mso-fareast-language:JA">※</span><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Environment<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Host OS: ubuntu 22.04<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">Docker Deamon: 25.0.3<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA">gdal-bin: 3.6.4<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:JA"><o:p> </o:p></span></p>
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