[GRASS-SVN] r53421 - grass-addons/grass7/raster/r.mess

Tue Oct 16 03:35:12 PDT 2012

Author: pvanbosgeo
Date: 2012-10-16 03:35:12 -0700 (Tue, 16 Oct 2012)
New Revision: 53421

Modified:
   grass-addons/grass7/raster/r.mess/r.mess.html
Log:
HTML cleanup

Modified: grass-addons/grass7/raster/r.mess/r.mess.html
===================================================================

--- grass-addons/grass7/raster/r.mess/r.mess.html	2012-10-16 09:51:45 UTC (rev 53420)
+++ grass-addons/grass7/raster/r.mess/r.mess.html	2012-10-16 10:35:12 UTC (rev 53421)
@@ -1,74 +1,7 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
-<html>
-<head>
-<title>GRASS GIS manual: r.mess</title>
-<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-<link rel="stylesheet" href="grassdocs.css" type="text/css">
-</head>
-<body bgcolor="white">
-
-<img src="grass_logo.png" alt="GRASS logo">
-<hr align="center" noshade="noshade" size="6">
-
-<h2>NAME</h2>
-
-<em><b>r.mess</b></em> - Computes the individual and multivariate
-environmental similarity surfaces (IESS and MESS)<br>
-
-<h2>KEYWORDS</h2>
-
-<h2>SYNOPSIS</h2>
-
-<div id="name"><b>r.mess</b><br>
-</div>
-
-<b>r.mess help</b><br>
-
-<div id="synopsis"><b>r.mess</b> [-<b>mkl</b>] <b>vector_input</b>=<em>name</em>
-<b>raster_input</b>=<em>names</em>[,<i>names</i>,...] <b>output</b>=<em>name</em>
-[<b>columns</b>=<em>string</em>] [--<b>overwrite</b>] [--<b>verbose</b>]
-[--<b>quiet</b>] </div>
-
-<div id="flags">
-<h3>Flags:</h3>
-<dl>
-  <dt><b>-m</b></dt>
-  <dd>Most dissimilar variable (MoD)</dd>
-  <dt><b>-k</b></dt>
-  <dd>Calculate MESS_mean - the mean value of the individual <br>
-  </dd>
-  <dt><b>-l</b></dt>
-  <dd>Calculate MESS_median</dd>
-  <dt><b>--overwrite</b></dt>
-  <dd>Allow output files to overwrite existing files</dd>
-  <dt><b>--verbose</b></dt>
-  <dd>Verbose module output</dd>
-  <dt><b>--quiet</b></dt>
-  <dd>Quiet module output</dd>
-</dl>
-</div>
-
-<div id="parameters">
-<h3>Parameters:</h3>
-<dl>
-  <dt><b>vector_input</b>=<em>name</em> <b>[required]</b></dt>
-  <dd>Reference points</dd>
-  <dt><b>raster_input</b>=<em>names[,<i>names</i>,...]</em> <b>[required]</b></dt>
-  <dd>Input raster map(s)</dd>
-  <dt><b>output</b>=<em>name</em> <b>[required]</b></dt>
-  <dd>Root name of the output MESS data layers</dd>
-  <dt><b>columns</b>=<em>string</em></dt>
-  <dd>Columns with environmental variables</dd>
-  <dd>Default: <em>Same names as input layers</em></dd>
-</dl>
-</div>
-
-<div id="description">
 <h2>DESCRIPTION</h2>
-<dl>
-  <p><em>r.mess</em> computes the "Multivariate Environmental
-Similarity
-Surfaces" (MESS) in GRASS using R as backend. The
+
+<em>r.mess</em> computes the "Multivariate Environmental
+Similarity Surfaces" (MESS) in GRASS using R as backend. The
 MESS index was proposed by Elith et al (2010) and is also
 implemented in the Maxent software. The MESS approach
 can be described as follows (from Elith et al 2010):
@@ -79,48 +12,41 @@
 influenced by the full distribution of the reference points, so that
 sites within the environmental range of the reference points but in
 relatively unusual environments will have a smaller value than those in
-very common environments."</p>
-  <p>This module will also compute the individual environmental
+very common environments."
+
+<p>This module will also compute the individual environmental
 similarity surfaces (IESS), which represents how similar a point is to
 a set of reference set of points for each of the input variable. MESS
 is then simply calculated as the minimum of its similarity with respect
-to each variable.<br>
-  <br>
+to each variable.
+
+<p>
 The IESS can have negative values – these are sites where the variable
-has a
-value that is outside the range in the reference set. A negative MESS
+has a value that is outside the range in the reference set. A negative MESS
 thus represents sites where at least one variable has a value that is
 outside the range of environments over the reference set, so these are
-novel environments.<br>
-  </p>
-  <p>In addition to the MESS, which is the minimum(IESS), the r.mess
-function also allows to compute mean and medium of the IESS layers.<br>
-  </p>
-</dl>
-</div>
+novel environments.
 
-<div id="see also">
+<p>
+In addition to the MESS, which is the minimum(IESS), the r.mess
+function also allows to compute mean and medium of the IESS layers.
+
 <h2>SEE ALSO</h2>
-There is also a similar function implemented for R using the R package <span style="font-style: italic;">raster</span>. See <a href="http://rossijeanpierre.wordpress.com/2012/08/13/computing-the-multivariate-environmental-similarity-surfaces-mess-index-in-r/">here</a>. Since October 3 2012, this function is part of the dismo package in R.
-for more information and the script.<br>
-</div>
+There is also a similar function implemented for R using the R package
+<em>raster</em>. See <a href="http://rossijeanpierre.wordpress.com/2012/08/13/computing-the-multivariate-environmental-similarity-surfaces-mess-index-in-r/">here</a>.
+Since October 3 2012, this function is part of the dismo package in R.
+for more information and the script.
 
-<div id="authors">
-<h2>AUTHORS</h2>
+<h2>AUTHOR</h2>
+
 Contact: <a href="http://ecodiv.org/contact.html">Paulo van Breugel</a>
-</div>
 
-<div id="references">
 <h2>REFERENCES</h2>
-<ol>
-  <li>Elith, J., Kearney, M., & Phillips, S. 2010. The art of
+<ul>
+<li>Elith, J., Kearney, M., & Phillips, S. 2010. The art of
 modelling range-shifting species. Methods in Ecology and Evolution 1:
 330–342.</li>
-</ol>
-</div>
+</ul>
 
-<br>
-
-<br>
-
-</body></html>
+<p>
+<i>Last changed: $Date: 2012-01-09 18:41:56 +0100 (Mon, 09 Jan 2012) $</i>

