[GRASS-SVN] r59079 - in grass/trunk/raster/r.li: . r.li.cwed r.li.daemon r.li.dominance r.li.edgedensity r.li.mpa r.li.mps r.li.padcv r.li.padrange r.li.padsd r.li.patchdensity r.li.patchnum r.li.pielou r.li.renyi r.li.richness r.li.setup r.li.shannon r.li.shape r.li.simpson
svn_grass at osgeo.org
svn_grass at osgeo.org
Tue Feb 18 02:07:33 PST 2014
Author: neteler
Date: 2014-02-18 02:07:32 -0800 (Tue, 18 Feb 2014)
New Revision: 59079
Modified:
grass/trunk/raster/r.li/r.li.cwed/r.li.cwed.html
grass/trunk/raster/r.li/r.li.daemon/r.li.daemon.html
grass/trunk/raster/r.li/r.li.dominance/r.li.dominance.html
grass/trunk/raster/r.li/r.li.edgedensity/r.li.edgedensity.html
grass/trunk/raster/r.li/r.li.html
grass/trunk/raster/r.li/r.li.mpa/r.li.mpa.html
grass/trunk/raster/r.li/r.li.mps/r.li.mps.html
grass/trunk/raster/r.li/r.li.padcv/r.li.padcv.html
grass/trunk/raster/r.li/r.li.padrange/r.li.padrange.html
grass/trunk/raster/r.li/r.li.padsd/r.li.padsd.html
grass/trunk/raster/r.li/r.li.patchdensity/r.li.patchdensity.html
grass/trunk/raster/r.li/r.li.patchnum/r.li.patchnum.html
grass/trunk/raster/r.li/r.li.pielou/r.li.pielou.html
grass/trunk/raster/r.li/r.li.renyi/r.li.renyi.html
grass/trunk/raster/r.li/r.li.richness/r.li.richness.html
grass/trunk/raster/r.li/r.li.setup/r.li.setup.html
grass/trunk/raster/r.li/r.li.shannon/r.li.shannon.html
grass/trunk/raster/r.li/r.li.shape/r.li.shape.html
grass/trunk/raster/r.li/r.li.simpson/r.li.simpson.html
Log:
r.li manual: cosmetics
Modified: grass/trunk/raster/r.li/r.li.cwed/r.li.cwed.html
===================================================================
--- grass/trunk/raster/r.li/r.li.cwed/r.li.cwed.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.cwed/r.li.cwed.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -23,7 +23,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -40,7 +40,7 @@
<h2>EXAMPLES</h2>
To calculate the contrast weighted edge density index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.cwed input=my_map conf=my_conf path=my_file output=my_out \
path=/path/to/weights.csv
@@ -57,7 +57,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.daemon/r.li.daemon.html
===================================================================
--- grass/trunk/raster/r.li/r.li.daemon/r.li.daemon.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.daemon/r.li.daemon.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -16,7 +16,7 @@
<h2>DESCRIPTION</h2>
<em>r.li.daemon</em> provides support for landscape index calculations on raster
-maps. It hides the management of areas, defined using <a href="r.li.setup.html">r.li.setup</a>
+maps. It hides the management of areas, defined using <a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
command. It is not used like a standalone program, but its functions are
a library used by all <em>r.li.[index]</em> commands.<br>
This description is a tutorial for new index definition. <br><br>
@@ -48,7 +48,7 @@
from the <i>r.li</i> library, for starting raster analysis.<br>
It follows the meaning of parameters:
<ul>
- <li><i>file</i> name of configuration file created using <a href="r.li.setup.html">r.li.setup</a>
+ <li><i>file</i> name of configuration file created using <a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
<li><i>f</i> pointer to index function defined above
<li><i>parameters</i> pointer to index special parameters
<li><i>raster</i> name of raster to use
@@ -74,7 +74,7 @@
<em><a href="http://grass.osgeo.org/gdp/landscape/r_le_manual5.pdf">old r.le manual</a></em><br>
<em><a href="r.li.html">r.li</a></em> - package overview <br>
-<em><a href="r.li.setup.html">r.li.setup</a></em>
+<em><a href="g.gui.rlisetup.html">g.gui.rlisetup</a></em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.dominance/r.li.dominance.html
===================================================================
--- grass/trunk/raster/r.li/r.li.dominance/r.li.dominance.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.dominance/r.li.dominance.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -13,7 +13,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -24,11 +24,14 @@
<h2>EXAMPLES</h2>
To calculate the dominance diversity index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.dominance input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.dominance input=forests conf=movwindow7 out=forests_dominance_mov7
@@ -38,7 +41,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.edgedensity/r.li.edgedensity.html
===================================================================
--- grass/trunk/raster/r.li/r.li.edgedensity/r.li.edgedensity.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.edgedensity/r.li.edgedensity.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -23,7 +23,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -41,7 +41,7 @@
<h2>EXAMPLES</h2>
To calculate the edge density index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.edgedensity input=my_map conf=my_conf output=my_out
</pre></div>
@@ -51,8 +51,11 @@
file run:<br>
<div class="code"><pre>
r.li.edgedensity input=my_map conf=my_conf output=my_out patch_type=34
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.edgedensity input=forests conf=movwindow7 out=forests_edgedens_mov7
@@ -62,7 +65,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.html
===================================================================
--- grass/trunk/raster/r.li/r.li.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -30,7 +30,7 @@
It supports analysis of landscapes composed of a mosaic of
patches, but, more generally, the modules work with any two-dimensional
raster map whose cell values are integer (e.g., 1, 2) or floating point
-(e.g., 1.1, 3.2) values. The <em>r.li.setup</em> module has options for
+(e.g., 1.1, 3.2) values. The <em>g.gui.rlisetup</em> module has options for
controlling the shape, size, number, and distribution of sampling
areas used to collect information about the landscape structure.
Sampling area shapes can be the entire map or a moving
@@ -50,7 +50,7 @@
The general procedure to calculate an index from a raster map is two-fold:
<ol>
-<li>run <em>r.li.setup</em>: create a configuration file selecting the parts of
+<li>run <em>g.gui.rlisetup</em>: create a configuration file selecting the parts of
raster to analyze.
<li>run one or more of the <em>r.li.<b>[index]</b></em> modules (e.g.,
@@ -83,7 +83,7 @@
<div class="code"><pre>
g.gui.rlisetup
</pre></div>
- <li> The main <em>r.li.setup</em> window is displayed, click on "New"
+ <li> The main <em>g.gui.rlisetup</em> window is displayed, click on "New"
<li> The new configuration window is now displayed, enter the
configuration file name (e.g., "my_conf", do not use absolute paths)
@@ -96,7 +96,7 @@
<li> Click on "Use keyboard to enter moving window dimension"
<li> Select "Rectangle" and enter 5 in the "height" and "width" fields
<li> Click on "Save settings"
- <li> Close the <em>r.li.setup</em> window
+ <li> Close the <em>g.gui.rlisetup</em> window
</ol>
<li> CALCULATE PATCHDENSITY INDEX
@@ -136,7 +136,7 @@
<b>Core modules</b>:
<ul>
<li> <a href="r.li.daemon.html">r.li.daemon</a>: job launch daemon</li>
- <li> <a href="r.li.setup.html">r.li.setup</a>: Configuration editor for r.li.'index'</li>
+ <li> <a href="g.gui.rlisetup.html">g.gui.rlisetup</a>: Configuration editor for r.li.'index'</li>
</ul>
<b>Patch indices</b>:
Modified: grass/trunk/raster/r.li/r.li.mpa/r.li.mpa.html
===================================================================
--- grass/trunk/raster/r.li/r.li.mpa/r.li.mpa.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.mpa/r.li.mpa.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -14,7 +14,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -32,11 +32,14 @@
<h2>EXAMPLES</h2>
To calculate the mean pixel attribute index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.mpa input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.mpa input=forests conf=movwindow7 out=forests_mpa_mov7
@@ -46,7 +49,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.mps/r.li.mps.html
===================================================================
--- grass/trunk/raster/r.li/r.li.mps/r.li.mps.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.mps/r.li.mps.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -19,7 +19,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -29,11 +29,14 @@
<h2>EXAMPLES</h2>
To calculate mean path size index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.mps input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.mps input=forests conf=movwindow7 out=forests_mps_mov7
@@ -43,7 +46,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.padcv/r.li.padcv.html
===================================================================
--- grass/trunk/raster/r.li/r.li.padcv/r.li.padcv.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.padcv/r.li.padcv.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -2,7 +2,7 @@
<em>r.li.padcv</em> calculates the coefficient of variation of patch
area sizes in hectares as:<br>
-<img src="rlipadcv_formula1.png" alt="rlipadcv formula"> <br>
+<img src="rlipadcv_formula1.png" alt="r.li.padcv formula"> <br>
with:<br>
<ul>
<li><b>SD</b>: standard deviation of patch area size
@@ -15,7 +15,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -24,11 +24,14 @@
<h2>EXAMPLES</h2>
To calculate patch area distribution coefficient of variation index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.padcv input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.padcv input=forests conf=movwindow7 out=forests_padcv_mov7
@@ -38,7 +41,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.padrange/r.li.padrange.html
===================================================================
--- grass/trunk/raster/r.li/r.li.padrange/r.li.padrange.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.padrange/r.li.padrange.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -2,7 +2,7 @@
<em>r.li.padrange</em> calculates the range of patch area sizes in
hectares as:<br>
-<img src="rlipadrange_formula.png" alt="rlipadrange formula"> <br>
+<img src="rlipadrange_formula.png" alt="r.li.padrange formula"> <br>
with:<br>
<ul>
<li><b>a<small><small>max</small></small></b>: max patch area size</li>
@@ -16,7 +16,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -26,11 +26,14 @@
<h2>EXAMPLES</h2>
To calculate range of patch area size index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.padrange input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.padrange input=forests conf=movwindow7 out=forests_padrange_mov7
@@ -40,7 +43,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.padsd/r.li.padsd.html
===================================================================
--- grass/trunk/raster/r.li/r.li.padsd/r.li.padsd.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.padsd/r.li.padsd.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -2,7 +2,7 @@
<em>r.li.padsd</em> calculates the standard deviation of patch
area sizes in hectares as:<br>
-<img src="rlipadsd_formula.png" alt="rlipadsd formula"> <br>
+<img src="rlipadsd_formula.png" alt="r.li.padsd formula"> <br>
with:<br>
<ul>
<li><b>MPS</b>: mean patch area size</li>
@@ -17,7 +17,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -26,11 +26,14 @@
<h2>EXAMPLES</h2>
To calculate patch area distribution standard deviation index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.padsd input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.padsd input=forests conf=movwindow7 out=forests_padsd_mov7
@@ -39,7 +42,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.patchdensity/r.li.patchdensity.html
===================================================================
--- grass/trunk/raster/r.li/r.li.patchdensity/r.li.patchdensity.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.patchdensity/r.li.patchdensity.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -19,7 +19,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -29,7 +29,7 @@
<h2>EXAMPLES</h2>
To calculate patch density index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.patchdensity input=my_map conf=my_conf output=my_out
</pre></div>
@@ -42,8 +42,9 @@
r.category landcover.30m
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43, 1, null())"
-# patch density (7x7 moving window defined in r.li.setup):
+# patch density (7x7 moving window defined in g.gui.rlisetup):
r.li.patchdensity forests conf=movwindow7 out=forests_p_dens7
+r.univar forests_p_dens7
d.rast.leg forests_p_dens7
r.to.vect forests out=forests feature=area
@@ -53,7 +54,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.patchnum/r.li.patchnum.html
===================================================================
--- grass/trunk/raster/r.li/r.li.patchnum/r.li.patchnum.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.patchnum/r.li.patchnum.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -10,7 +10,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -20,11 +20,14 @@
<h2>EXAMPLES</h2>
To calculate patch number index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.patchnum input=my_map conf=my_conf out=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.patchnum input=forests conf=movwindow7 out=forests_patchnum_mov7
@@ -34,7 +37,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.pielou/r.li.pielou.html
===================================================================
--- grass/trunk/raster/r.li/r.li.pielou/r.li.pielou.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.pielou/r.li.pielou.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -1,7 +1,7 @@
<h2>DESCRIPTION</h2>
<em>r.li.pielou</em> calculates the "Pielou's diversity index" as: <br>
-<img src="r_li_pielou.png"><br>
+<img src="r_li_pielou.png" alt="r.li.pielou formula"> <br>
with:
<ul>
<li><b>J</b>: Pielou eveness index</li>
@@ -12,10 +12,11 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
+<!-- TODO: verify next: -->
If the input raster contains NULL value cells, <em>r.li.pielou</em>
returns -1 for these cells. <br>
If you want to change these -1 values to NULL, run subsequently on the resulting map:
@@ -27,11 +28,14 @@
<h2>EXAMPLES</h2>
To calculate Pielou's diversity index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.pielou input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.pielou input=forests conf=movwindow7 out=forests_pielou_mov7
@@ -41,7 +45,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.renyi/r.li.renyi.html
===================================================================
--- grass/trunk/raster/r.li/r.li.renyi/r.li.renyi.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.renyi/r.li.renyi.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -1,7 +1,7 @@
<h2>DESCRIPTION</h2>
<em>r.li.renyi</em> calculates the "Renyi's diversity index" as:<br>
-<img src="r_li_renyi.png"> <br>
+<img src="r_li_renyi.png alt="r.li.renyi formula"> <br>
with:
<ul>
<li><b>H</b>: Renyi entropy</li>
@@ -14,7 +14,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -30,11 +30,14 @@
<h2>EXAMPLES</h2>
To calculate Renyi's diversity index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.renyi input=my_map conf=my_conf output=my_out alpha=0.6
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.renyi input=forests conf=movwindow7 out=forests_renyi_mov7_a06 alpha=0.6
@@ -44,7 +47,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.richness/r.li.richness.html
===================================================================
--- grass/trunk/raster/r.li/r.li.richness/r.li.richness.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.richness/r.li.richness.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -2,7 +2,7 @@
<em>r.li.richness</em> calculates the "richness diversity index" as:
<br>
-<img src="rliRichness_formula.png" alt="rliRichness formula">
+<img src="rliRichness_formula.png" alt="r.li.richness formula">
<br>
with:
<ul>
@@ -13,7 +13,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -31,11 +31,14 @@
To calculate the richness diversity index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.richness input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.richness input=forests conf=movwindow7 out=forests_richness_mov7
@@ -47,7 +50,7 @@
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
Modified: grass/trunk/raster/r.li/r.li.setup/r.li.setup.html
===================================================================
--- grass/trunk/raster/r.li/r.li.setup/r.li.setup.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.setup/r.li.setup.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -1,6 +1,6 @@
<h2>DESCRIPTION</h2>
-<em>r.li.setup</em> creates and shows configuration files for the
+<em>g.gui.rlisetup</em> creates and shows configuration files for the
other analytical <em>r.li</em> modules. For a general introduction, see
<a href="r.li.html">r.li</a>.
<br>
Modified: grass/trunk/raster/r.li/r.li.shannon/r.li.shannon.html
===================================================================
--- grass/trunk/raster/r.li/r.li.shannon/r.li.shannon.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.shannon/r.li.shannon.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -1,7 +1,7 @@
<h2>DESCRIPTION</h2>
<em>r.li.shannon</em> calculates the "Shannon's diversity index" as:<br>
-<img src="rliShannon_formula.png" alt="rliShannon formula"> <br>
+<img src="rliShannon_formula.png" alt="r.li.shannon formula"> <br>
with:
<ul>
<li><b>i</b>: patch type</li>
@@ -13,7 +13,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -30,11 +30,14 @@
<h2>EXAMPLES</h2>
To calculate Shannon's diversity index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.shannon input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.shannon input=forests conf=movwindow7 out=forests_shannon_mov7
@@ -44,7 +47,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.shape/r.li.shape.html
===================================================================
--- grass/trunk/raster/r.li/r.li.shape/r.li.shape.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.shape/r.li.shape.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -6,7 +6,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -23,11 +23,14 @@
<h2>EXAMPLES</h2>
To calculate the shape index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.shape input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.shape input=forests conf=movwindow7 out=forests_shape_mov7
@@ -37,7 +40,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
Modified: grass/trunk/raster/r.li/r.li.simpson/r.li.simpson.html
===================================================================
--- grass/trunk/raster/r.li/r.li.simpson/r.li.simpson.html 2014-02-17 21:08:19 UTC (rev 59078)
+++ grass/trunk/raster/r.li/r.li.simpson/r.li.simpson.html 2014-02-18 10:07:32 UTC (rev 59079)
@@ -1,7 +1,7 @@
<h2>DESCRIPTION</h2>
<em>r.li.simpson</em> calculates the "Simpson's diversity index" as:<br>
-<img src="rliSimpson_formula.png" alt="rliSimpson formula"> <br>
+<img src="rliSimpson_formula.png" alt="r.li.simpson formula"> <br>
with:
<ul>
<li><b>i</b>: patch type</li>
@@ -13,7 +13,7 @@
<h2>NOTES</h2>
Do not use absolute path names for the <b>output</b> map/file.
-If the "moving window" method was selected in <b>r.li.setup</b>, then the
+If the "moving window" method was selected in <b>g.gui.rlisetup</b>, then the
output will be a raster map, otherwise an ASCII file will be generated in
the <tt>$HOME/.grass7/r.li/output/</tt> folder.
<p>
@@ -29,11 +29,14 @@
<h2>EXAMPLES</h2>
To calculate Simpson's diversity index on map <em>my_map</em>, using
<em>my_conf</em> configuration file (previously defined with
-<em>r.li.setup</em>) and saving results in <em>my_out</em>, run:
+<em>g.gui.rlisetup</em>) and saving results in <em>my_out</em>, run:
<div class="code"><pre>
r.li.simpson input=my_map conf=my_conf output=my_out
+</pre></div>
+<p>
-# forest map example:
+Forest map (Spearfish sample dataset) example:
+<div class="code"><pre>
g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.simpson input=forests conf=movwindow7 out=forests_simpson_mov7
@@ -43,7 +46,7 @@
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a> - package overview<br>
-<a href="r.li.setup.html">r.li.setup</a>
+<a href="g.gui.rlisetup.html">g.gui.rlisetup</a>
</em>
<h2>REFERENCES</h2>
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