[GRASS-SVN] r61786 - in grass-promo/grasslecture: . 20131031_Tokyo_FOSS4G 20131031_Tokyo_FOSS4G/SVG
svn_grass at osgeo.org
svn_grass at osgeo.org
Wed Sep 3 02:41:05 PDT 2014
Author: ychemin
Date: 2014-09-03 02:41:04 -0700 (Wed, 03 Sep 2014)
New Revision: 61786
Added:
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/CGIAR_Green.jpg
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grass-promo/grasslecture/20131031_Tokyo_FOSS4G/Fig_4.png
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/GDALLogoColor.png
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/Gigabyte-GS-R22PHL-Xeon-Phi-Cage-600x440.png
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grass-promo/grasslecture/20131031_Tokyo_FOSS4G/SVG/
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grass-promo/grasslecture/20131031_Tokyo_FOSS4G/architecture_implementation.odg
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/architecture_implementation.png
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/chain0.png
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grass-promo/grasslecture/20131031_Tokyo_FOSS4G/public_domain_logo.png
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/pyGRASS1.png
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grass-promo/grasslecture/20131031_Tokyo_FOSS4G/tilera_quanta_sq2_mobo.jpg
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/tmpnotessettings.tex
grass-promo/grasslecture/20131031_Tokyo_FOSS4G/xeon-phi-oh.jpg
Log:
Added Keynote to FOSS4G.jp at Tokyo, 2013
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/CGIAR_Green.jpg
===================================================================
(Binary files differ)
Property changes on: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/CGIAR_Green.jpg
___________________________________________________________________
Added: svn:mime-type
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+ defining Unicode char U+25EF (decimal 9711)
+ defining Unicode char U+266A (decimal 9834)
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+ defining Unicode char U+200C (decimal 8204)
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+\headcommand {\slideentry {2}{2}{3}{8/8}{ET examples}{0}}
+\headcommand {\beamer at framepages {8}{8}}
+\headcommand {\slideentry {2}{2}{4}{9/9}{ET examples}{0}}
+\headcommand {\beamer at framepages {9}{9}}
+\headcommand {\slideentry {2}{2}{5}{10/10}{ET examples}{0}}
+\headcommand {\beamer at framepages {10}{10}}
+\headcommand {\sectionentry {3}{Frameworks}{11}{Frameworks}{0}}
+\headcommand {\beamer at sectionpages {5}{10}}
+\headcommand {\beamer at subsectionpages {6}{10}}
+\headcommand {\beamer at subsectionentry {0}{3}{1}{11}{Chain processing}}\headcommand {\beamer at subsectionpages {11}{10}}
+\headcommand {\slideentry {3}{1}{1}{11/11}{Chain processing}{0}}
+\headcommand {\beamer at framepages {11}{11}}
+\headcommand {\beamer at subsectionentry {0}{3}{2}{12}{Blueprint}}\headcommand {\beamer at subsectionpages {11}{11}}
+\headcommand {\slideentry {3}{2}{1}{12/12}{Blueprint}{0}}
+\headcommand {\beamer at framepages {12}{12}}
+\headcommand {\beamer at subsectionentry {0}{3}{3}{13}{GDAL}}\headcommand {\beamer at subsectionpages {12}{12}}
+\headcommand {\slideentry {3}{3}{1}{13/13}{GDAL}{0}}
+\headcommand {\beamer at framepages {13}{13}}
+\headcommand {\slideentry {3}{3}{2}{14/14}{GDAL}{0}}
+\headcommand {\beamer at framepages {14}{14}}
+\headcommand {\beamer at subsectionentry {0}{3}{4}{15}{GRASS GIS}}\headcommand {\beamer at subsectionpages {13}{14}}
+\headcommand {\slideentry {3}{4}{1}{15/15}{GRASS GIS}{0}}
+\headcommand {\beamer at framepages {15}{15}}
+\headcommand {\slideentry {3}{4}{2}{16/16}{GRASS GIS}{0}}
+\headcommand {\beamer at framepages {16}{16}}
+\headcommand {\slideentry {3}{4}{3}{17/17}{GRASS GIS}{0}}
+\headcommand {\beamer at framepages {17}{17}}
+\headcommand {\slideentry {3}{4}{4}{18/18}{GRASS GIS}{0}}
+\headcommand {\beamer at framepages {18}{18}}
+\headcommand {\slideentry {3}{4}{5}{19/19}{GRASS GIS}{0}}
+\headcommand {\beamer at framepages {19}{19}}
+\headcommand {\sectionentry {4}{Conclusions}{20}{Conclusions}{0}}
+\headcommand {\beamer at sectionpages {11}{19}}
+\headcommand {\beamer at subsectionpages {15}{19}}
+\headcommand {\slideentry {4}{0}{6}{20/20}{}{0}}
+\headcommand {\beamer at framepages {20}{20}}
+\headcommand {\slideentry {4}{0}{7}{21/21}{}{0}}
+\headcommand {\beamer at framepages {21}{21}}
+\headcommand {\beamer at partpages {1}{21}}
+\headcommand {\beamer at subsectionpages {20}{21}}
+\headcommand {\beamer at sectionpages {20}{21}}
+\headcommand {\beamer at documentpages {21}}
+\headcommand {\def \inserttotalframenumber {21}}
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.out
===================================================================
--- grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.out (rev 0)
+++ grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.out 2014-09-03 09:41:04 UTC (rev 61786)
@@ -0,0 +1,10 @@
+\BOOKMARK [2][]{Outline0.1}{Introduction}{}% 1
+\BOOKMARK [2][]{Outline0.2}{Evapotranspiration Modeling}{}% 2
+\BOOKMARK [3][]{Outline0.2.1.5}{Overview}{Outline0.2}% 3
+\BOOKMARK [3][]{Outline0.2.2.6}{ET examples}{Outline0.2}% 4
+\BOOKMARK [2][]{Outline0.3}{Frameworks}{}% 5
+\BOOKMARK [3][]{Outline0.3.1.11}{Chain processing}{Outline0.3}% 6
+\BOOKMARK [3][]{Outline0.3.2.12}{Blueprint}{Outline0.3}% 7
+\BOOKMARK [3][]{Outline0.3.3.13}{GDAL}{Outline0.3}% 8
+\BOOKMARK [3][]{Outline0.3.4.15}{GRASS GIS}{Outline0.3}% 9
+\BOOKMARK [2][]{Outline0.4}{Conclusions}{}% 10
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.pdf
===================================================================
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+ application/octet-stream
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===================================================================
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===================================================================
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+ application/octet-stream
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.tex
===================================================================
--- grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.tex (rev 0)
+++ grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.tex 2014-09-03 09:41:04 UTC (rev 61786)
@@ -0,0 +1,454 @@
+\documentclass[xcolor=dvipsnames,beamer]{beamer} %handout,notes=show
+
+\usepackage{textcomp}
+\usepackage[utf8]{inputenc}
+% \usepackage{default}
+\usepackage{graphicx}
+% \usepackage[pdftex]{hyperref}
+\usepackage{url}
+\usepackage{amsmath}
+
+% frames have to be fragile
+\newif\ifnotes
+\input{tmpnotessettings}
+%\notestrue
+
+
+\ifnotes
+%\setbeamertemplate{note page}[plain]
+\setbeamertemplate{note page}[compress]
+\setbeamerfont{note page}{size=\large}
+\setbeameroption{show only notes}
+%\setbeameroption{show notes}
+\usepackage{pgfpages}
+\pgfpagesuselayout{2 on 1}[a4paper,border shrink=5mm]%
+\else
+%\setbeameroption{hide notes}
+\fi
+%\notesfalse
+
+
+
+% nastaveni TypeWriter
+%\usepackage{courier}
+%\usepackage{lmodern}
+%\renewcommand*\ttdefault{txtt}
+\DeclareFontShape{OT1}{cmtt}{bx}{n}{<5><6><7><8><9><10><10.95><12><14.4><17.28><20.74><24.88>cmttb10}{}
+
+
+% \usepackage{verbatim}
+\usepackage[absolute,overlay]{textpos}
+
+\usepackage{listings}
+% \usepackage{courier}
+\definecolor{grey}{RGB}{70,70,70}
+\definecolor{green}{RGB}{0,255,0}
+\definecolor{red}{RGB}{202,53,53}
+\definecolor{lightGrey}{RGB}{250,250,250}
+\definecolor{darkGrey}{RGB}{50,50,50}
+
+
+\usepackage{color}
+\definecolor{lightgray}{rgb}{.9,.9,.9}
+\definecolor{darkgray}{rgb}{.4,.4,.4}
+\definecolor{purple}{rgb}{0.65, 0.12, 0.82}
+
+
+% \usetheme{Warsaw}
+\usetheme{Madrid}
+% \usetheme{Szeged}
+% \useoutertheme{infolines}
+% \usecolortheme[named=MidnightBlue]{structure}
+\usecolortheme[named=PineGreen]{structure}
+% \setbeamertemplate{navigation symbols}{}
+
+
+
+
+\title[HPC benchmarking ET models OSGEO]
+{Big data ET models \& benchmarking\\
+with distributed OSGEO tools}
+%\subtitle{SVO\v{C}}
+%\pdforstring{}{}
+\author[Yann Chemin]
+{\vspace{50pt}\\
+Yann Chemin}
+
+\institute[IWMI]
+{International Water Management Institute\\
+ \vspace{5pt}
+\begin{flushleft}
+ \includegraphics[width=14cm]{ciacanolafield}
+\end{flushleft}
+}
+\date{\tiny October 31, 2013}
+
+
+%\AtBeginSection[]{\begin{frame}\frametitle{Obsah}%
+%\tableofcontents[currentsection ]\end{frame}}
+%\AtBeginSubsection[]
+%{
+% \begin{frame}<beamer>
+% \frametitle{Obsah}
+% \tableofcontents[currentsection,currentsubsection]
+% \end{frame}
+%}
+
+\setbeamercovered{transparent}
+
+\hypersetup{%
+ pdfauthor={Yann Chemin},%
+ pdfsubject={Presentation},%
+ pdfkeywords={HPC, benchmarking, Evapotranspiration, models, OSGEO}
+}
+
+\input{nastavenilst}
+
+\newcommand{\overovaciref}[1]{{\scriptsize(\ref{#1})}}
+
+
+\usepackage{tipa}
+\newcommand{\pron}[2]{#1 [#2]}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{document}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\frame{
+\titlepage
+}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}{Contents}
+\tableofcontents
+\end{frame}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{CGIAR}
+
+Consultative Group for International Agricultural Research\\
+Ratified on October 2nd, 2013\\
+Full Open Access \& Open Source research data and publication
+\newline
+
+\begin{columns}[l]
+\column{0.5\textwidth}
+\begin{center}
+\begin{itemize}
+ \item International Public Goods
+ \item Public Domain
+ \item Publications Open Access
+ \item FOSS models and algorithms
+\end{itemize}
+\end{center}
+
+\column{0.5\textwidth}
+\begin{center}
+ \includegraphics[width=1.5cm]{CGIAR_Green}
+ \hspace{5mm}
+ \includegraphics[width=1.8cm]{WLE_and_partners-vertical_logo_strip.png}
+\end{center}
+\end{columns}
+\vspace{5mm} 2018: all 15 CG centres, already FOSS4G Lab:
+(\href{http://gsl.worldagroforestry.org}{gsl.worldagroforestry.org})
+\end{frame}
+
+
+\section{Introduction}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Overview}
+
+Evapotranspiration is the largest transiting quantity in the daily
+hydrological cycle along with rain. It is used by scientists and
+managers in:
+\newline\linebreak
+
+\begin{itemize}
+ \item Irrigation systems performance
+ \item Crop water productivity
+ \item Water accounting
+ \item Wetlands-agriculture interface
+ \item Basin water uses quantification
+ \item Climate change on water cycle \& users
+\end{itemize}
+\end{frame}
+
+\section{Evapotranspiration Modeling}
+\subsection{Overview}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Overview}
+
+There are several types of evapotranspiration modeling methods:\\
+
+\begin{itemize}
+ \item Reference ET: Hargreaves, Penman-Monteith
+ \item Potential ET: Priestley-Taylor, astronomical
+ \item Actual ET: Thermodynamic/energy balance (mostly)
+\end{itemize}
+
+\begin{block}{OSGEO tools}
+\begin{columns}[l]
+\column{0.2\textwidth}
+\begin{center}
+\includegraphics[width=2cm]{OSGeo_logo}
+\end{center}
+\column{0.4\textwidth}
+\begin{center}
+\includegraphics[width=2cm]{GDALLogoColor}
+\end{center}
+\column{0.4\textwidth}
+\begin{center}
+\includegraphics[width=2cm]{Grass_GIS}
+\end{center}
+\end{columns}
+\end{block}
+\end{frame}
+
+\subsection{ET examples}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Equity of water use in irrigation systems}
+
+Irrigation water monitoring \& management
+\begin{itemize}
+ \item Map: Uniform colour is equity of water distribution
+ \item Graph: Irrigation system equity in time (mm/d, daily, 12 years)
+\end{itemize}
+
+\begin{columns}[l]
+\column{0.2\textwidth}
+\begin{center}
+\includegraphics[width=4cm]{fess2012ef}
+\end{center}
+
+\column{0.8\textwidth}
+\begin{flushright}
+ \includegraphics[width=8cm]{fess2012meaneftemporal}
+\end{flushright}
+\end{columns}
+% Evaporative Fraction 2012 October 4th Hakra, Punjab, Pakistan ~4000 images (2000-2012)
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Crop water consumption in irrigation systems}
+
+Actual evapotranspiration (mm/d, daily, 11 years)\\
+for agricultural water performance management.\\
+
+\begin{center}
+ \includegraphics[width=11cm]{ciameanet}\\
+ \includegraphics[width=11cm]{ciaminmaxet}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Water depletion in River Basins}
+
+Actual evapotranspiration (mm/d, daily, 11 years)\\
+for the Murray-Darling Basin (1M Km\textsuperscript{2})\\
+
+\begin{center}
+ \includegraphics[width=11.5cm]{mdbmeanet}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Evapotranspiration @ country level}
+
+Actual evapotranspiration (365 days integrated)\\
+for water resources monitoring \& management.\\
+
+\begin{center}
+ \includegraphics[width=5cm]{slet2005}
+ \hspace{10mm}
+ \includegraphics[width=5cm]{slet2010}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{ET models Benchmarking}
+
+\begin{center}
+ Average ET for Sri Lanka, Daily 2000-2012 (mm/d, daily, 12.3 years)
+ \includegraphics[width=12cm]{sltemporaletb}
+\end{center}
+
+\begin{block}{Comparison}
+\begin{itemize}
+ \item ETo \& ETpot (rad) are similar, expected.
+ \item ETa models are not so similar, expected.
+ \item ETo \& ETpot (rad) are higher than ETa models, expected.
+\end{itemize}
+
+\end{block}
+\end{frame}
+
+
+\section{Frameworks}
+\subsection{Chain processing}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Chain processing}
+
+Chain processing has a fundamental impact on remote sensing work:\\
+
+\begin{itemize}
+ \item Standardization limits bugs
+ \item Less prone to human error
+ \item Simpler parameterization access
+ \item Permits to apply any number of modules to all target images
+ \item Ensures maximum quality of generated images
+\end{itemize}
+\end{frame}
+
+\subsection{Blueprint}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Blueprint}
+
+\begin{center}
+ \includegraphics[width=7.5cm]{chain0}
+\end{center}
+
+\begin{itemize}
+ \item GDAL+[C+OpenMP]
+ \item GRASSGIS+pyGRASS+[C+OpenMP]
+\end{itemize}
+\end{frame}
+
+\subsection{GDAL}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{GDAL framework}
+
+\begin{center}
+ GDAL+[C+OpenMP]
+ \includegraphics[width=8.5cm]{chain2}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{GDAL framework}
+
+\begin{columns}[l]
+\column[t]{0.6\textwidth}
+\begin{center}
+ OpenMP Distribution \\
+ \includegraphics[width=7.5cm]{chain1}
+\end{center}
+\column[t]{0.4\textwidth}
+\begin{center}
+ Cores \\
+ \includegraphics[width=4cm]{cores}
+\end{center}
+\end{columns}
+\end{frame}
+
+
+\subsection{GRASS GIS}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{GRASS GIS framework}
+
+\begin{center}
+ \includegraphics[width=8.5cm]{architecture_implementation}
+\end{center}
+
+\begin{block}{metaModule concept}
+{\bf pyGRASS:} vertical integration of GRASS GIS modules\\
+{\bf GRASS GIS modules:} [C+OpenMP]
+\end{block}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{pyGRASS}
+
+\begin{center}
+ Summary for Landsat 7 pyGRASS MetaModule
+ \includegraphics[width=10cm]{pyGRASS1}\\
+ \href{http://grasswiki.osgeo.org/wiki/Python/pygrass}{http://grasswiki.osgeo.org/wiki/Python/pygrass}
+\end{center}
+
+\end{frame}
+
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Future: 128-cores from Tile-GX}
+
+\begin{columns}[l]
+\column[t]{0.5\textwidth}
+\begin{center}
+ 64-core Tile-GX\newline\linebreak
+ \includegraphics[width=5cm]{TILE-Gx_Block_Diagram_large}
+\end{center}
+\column[t]{0.5\textwidth}
+\begin{center}
+ Dual Tile-GX on {\small $1/2$} rack board\newline\linebreak
+ \includegraphics[width=5cm]{tilera_quanta_sq2_mobo}
+\end{center}
+
+\end{columns}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Future: 120-cores from Xeon Phi}
+
+\begin{columns}[l]
+\column[t]{0.5\textwidth}
+\begin{center}
+ 60-core Phi\newline\linebreak
+ \includegraphics[width=5cm]{xeon-phi-oh}
+\end{center}
+\column[t]{0.5\textwidth}
+\begin{center}
+ Dual Phi in Gygabyte cage\newline\linebreak
+ \includegraphics[width=5cm]{Gigabyte-GS-R22PHL-Xeon-Phi-Cage-600x440}
+\end{center}
+
+\end{columns}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Outlooks}
+
+\begin{itemize}
+ \item Multi-Cores Hardware (Tile-GX, Xeon Phi)
+ \item Multi-GPU distribution (OpenCL, CUDA)
+ \item Multi-CPU distribution (MPI)
+ \item MODIS and Landsat archives under close pipe distance?
+ \item Online: automatic, PyWPS, SOS/network ?
+\end{itemize}
+
+\end{frame}
+
+\section{Conclusions}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Conclusions}
+
+\begin{block}{Distributed ET models benchmarking setup with OSGEO tools}
+\begin{itemize}
+ \item {\bf GDAL:} C+OpenMP
+ \item {\bf GDAL:} Core-based scaling
+ \item {\bf GRASS GIS:} pyGRASS for metaModule
+ \item {\bf GRASS GIS:} pyGRASS finish\_=False
+ \item {\bf GRASS GIS:} C+OpenMP inside modules
+ \item {\bf Targets:} MODIS (Terra/Aqua), Landsat (all), Aster
+\end{itemize}
+\end{block}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Thank You}
+
+\vspace{50mm}
+\begin{flushright}
+ \includegraphics[width=3cm]{iwmi}
+ \hspace{10mm}
+ \includegraphics[width=2cm]{etb_qr}
+\end{flushright}
+
+\end{frame}
+
+\end{document}
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.tex.backup
===================================================================
--- grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.tex.backup (rev 0)
+++ grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.tex.backup 2014-09-03 09:41:04 UTC (rev 61786)
@@ -0,0 +1,452 @@
+\documentclass[xcolor=dvipsnames,beamer]{beamer} %handout,notes=show
+
+\usepackage{textcomp}
+\usepackage[utf8]{inputenc}
+% \usepackage{default}
+\usepackage{graphicx}
+% \usepackage[pdftex]{hyperref}
+\usepackage{url}
+\usepackage{amsmath}
+
+% frames have to be fragile
+\newif\ifnotes
+\input{tmpnotessettings}
+%\notestrue
+
+
+\ifnotes
+%\setbeamertemplate{note page}[plain]
+\setbeamertemplate{note page}[compress]
+\setbeamerfont{note page}{size=\large}
+\setbeameroption{show only notes}
+%\setbeameroption{show notes}
+\usepackage{pgfpages}
+\pgfpagesuselayout{2 on 1}[a4paper,border shrink=5mm]%
+\else
+%\setbeameroption{hide notes}
+\fi
+%\notesfalse
+
+
+
+% nastaveni TypeWriter
+%\usepackage{courier}
+%\usepackage{lmodern}
+%\renewcommand*\ttdefault{txtt}
+\DeclareFontShape{OT1}{cmtt}{bx}{n}{<5><6><7><8><9><10><10.95><12><14.4><17.28><20.74><24.88>cmttb10}{}
+
+
+% \usepackage{verbatim}
+\usepackage[absolute,overlay]{textpos}
+
+\usepackage{listings}
+% \usepackage{courier}
+\definecolor{grey}{RGB}{70,70,70}
+\definecolor{green}{RGB}{0,255,0}
+\definecolor{red}{RGB}{202,53,53}
+\definecolor{lightGrey}{RGB}{250,250,250}
+\definecolor{darkGrey}{RGB}{50,50,50}
+
+
+\usepackage{color}
+\definecolor{lightgray}{rgb}{.9,.9,.9}
+\definecolor{darkgray}{rgb}{.4,.4,.4}
+\definecolor{purple}{rgb}{0.65, 0.12, 0.82}
+
+
+% \usetheme{Warsaw}
+\usetheme{Madrid}
+% \usetheme{Szeged}
+% \useoutertheme{infolines}
+% \usecolortheme[named=MidnightBlue]{structure}
+\usecolortheme[named=PineGreen]{structure}
+% \setbeamertemplate{navigation symbols}{}
+
+
+
+
+\title[HPC benchmarking ET models OSGEO]
+{Big data ET models \& benchmarking\\
+with distributed OSGEO tools}
+%\subtitle{SVO\v{C}}
+%\pdforstring{}{}
+\author[Yann Chemin]
+{\vspace{50pt}\\
+Yann Chemin}
+
+\institute[IWMI]
+{International Water Management Institute\\
+ \vspace{5pt}
+\begin{flushleft}
+ \includegraphics[width=14cm]{ciacanolafield}
+\end{flushleft}
+}
+\date{\tiny October 31, 2013}
+
+
+%\AtBeginSection[]{\begin{frame}\frametitle{Obsah}%
+%\tableofcontents[currentsection ]\end{frame}}
+%\AtBeginSubsection[]
+%{
+% \begin{frame}<beamer>
+% \frametitle{Obsah}
+% \tableofcontents[currentsection,currentsubsection]
+% \end{frame}
+%}
+
+\setbeamercovered{transparent}
+
+\hypersetup{%
+ pdfauthor={Yann Chemin},%
+ pdfsubject={Presentation},%
+ pdfkeywords={HPC, benchmarking, Evapotranspiration, models, OSGEO}
+}
+
+\input{nastavenilst}
+
+\newcommand{\overovaciref}[1]{{\scriptsize(\ref{#1})}}
+
+
+\usepackage{tipa}
+\newcommand{\pron}[2]{#1 [#2]}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{document}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\frame{
+\titlepage
+}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}{Contents}
+\tableofcontents
+\end{frame}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{CGIAR}
+
+Consultative Group for International Agricultural Research\\
+Ratified on October 2nd, 2013\\
+Full Open Access \& Open Source research data and publication
+\newline
+
+\begin{columns}[l]
+\column{0.5\textwidth}
+\begin{center}
+\begin{itemize}
+ \item International Public Goods
+ \item Public Domain
+ \item Publications Open Access
+ \item FOSS models and algorithms
+\end{itemize}
+\end{center}
+
+\column{0.5\textwidth}
+\begin{center}
+ \includegraphics[width=1.5cm]{CGIAR_Green}
+ \hspace{5mm}
+ \includegraphics[width=1.8cm]{WLE_and_partners-vertical_logo_strip.png}
+\end{center}
+\end{columns}
+\vspace{5mm} 2018: all 15 CG centres, already FOSS4G Lab:
+(\href{http://gsl.worldagroforestry.org}{gsl.worldagroforestry.org})
+\end{frame}
+
+
+\section{Introduction}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Overview}
+
+Evapotranspiration is the largest transiting quantity in the daily
+hydrological cycle along with rain. It is used by scientists and
+managers in:
+\newline\linebreak
+
+\begin{itemize}
+ \item Irrigation systems performance
+ \item Crop water productivity
+ \item Water accounting
+ \item Wetlands-agriculture interface
+ \item Basin water uses quantification
+ \item Climate change on water cycle \& users
+\end{itemize}
+\end{frame}
+
+\section{Evapotranspiration Modeling}
+\subsection{Overview}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Overview}
+
+There are several types of evapotranspiration modeling methods:\\
+
+\begin{itemize}
+ \item Reference ET: Hargreaves, Penman-Monteith
+ \item Potential ET: Priestley-Taylor, astronomical
+ \item Actual ET: Thermodynamic/energy balance (mostly)
+\end{itemize}
+
+\begin{block}{OSGEO tools}
+\begin{columns}[l]
+\column{0.2\textwidth}
+\begin{center}
+\includegraphics[width=2cm]{OSGeo_logo}
+\end{center}
+\column{0.4\textwidth}
+\begin{center}
+\includegraphics[width=2cm]{GDALLogoColor}
+\end{center}
+\column{0.4\textwidth}
+\begin{center}
+\includegraphics[width=2cm]{Grass_GIS}
+\end{center}
+\end{columns}
+\end{block}
+\end{frame}
+
+\subsection{ET examples}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Equity of water use in irrigation systems}
+
+Irrigation water monitoring \& management
+\begin{itemize}
+ \item Map: Uniform colour is equity of water distribution
+ \item Graph: Irrigation system equity in time (mm/d, daily, 12 years)
+\end{itemize}
+
+\begin{columns}[l]
+\column{0.2\textwidth}
+\begin{center}
+\includegraphics[width=4cm]{fess2012ef}
+\end{center}
+
+\column{0.8\textwidth}
+\begin{flushright}
+ \includegraphics[width=8cm]{fess2012meaneftemporal}
+\end{flushright}
+\end{columns}
+% Evaporative Fraction 2012 October 4th Hakra, Punjab, Pakistan ~4000 images (2000-2012)
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Crop water consumption in irrigation systems}
+
+Actual evapotranspiration (mm/d, daily, 11 years)\\
+for agricultural water performance management.\\
+
+\begin{center}
+ \includegraphics[width=11cm]{ciameanet}\\
+ \includegraphics[width=11cm]{ciaminmaxet}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Water depletion in River Basins}
+
+Actual evapotranspiration (mm/d, daily, 11 years)\\
+for the Murray-Darling Basin (1M Km\textsuperscript{2})\\
+
+\begin{center}
+ \includegraphics[width=11.5cm]{mdbmeanet}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Evapotranspiration @ country level}
+
+Actual evapotranspiration (365 days integrated)\\
+for water resources monitoring \& management.\\
+
+\begin{center}
+ \includegraphics[width=5cm]{slet2005}
+ \hspace{10mm}
+ \includegraphics[width=5cm]{slet2010}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{ET models Benchmarking}
+
+\begin{center}
+ Average ET for Sri Lanka, Daily 2000-2012 (mm/d, daily, 12.3 years)
+ \includegraphics[width=12cm]{sltemporaletb}
+\end{center}
+
+\begin{block}{Comparison}
+\begin{itemize}
+ \item ETo \& ETpot (rad) are similar, expected.
+ \item ETa models are not so similar, expected.
+ \item ETo \& ETpot (rad) are higher than ETa models, expected.
+\end{itemize}
+
+\end{block}
+\end{frame}
+
+
+\section{Frameworks}
+\subsection{Chain processing}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Chain processing}
+
+Chain processing has a fundamental impact on remote sensing work:\\
+
+\begin{itemize}
+ \item Standardization limits bugs
+ \item Less prone to human error
+ \item Simpler parameterization access
+ \item Permits to apply any number of modules to all target images
+ \item Ensures maximum quality of generated images
+\end{itemize}
+\end{frame}
+
+\subsection{Blueprint}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Blueprint}
+
+\begin{center}
+ \includegraphics[width=7.5cm]{chain0}
+\end{center}
+
+\begin{itemize}
+ \item GDAL+[C+OpenMP]
+ \item GRASSGIS+pyGRASS+[C+OpenMP]
+\end{itemize}
+\end{frame}
+
+\subsection{GDAL}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{GDAL framework}
+
+\begin{center}
+ GDAL+[C+OpenMP]
+ \includegraphics[width=8.5cm]{chain2}
+\end{center}
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{GDAL framework}
+
+\begin{columns}[l]
+\column[t]{0.6\textwidth}
+\begin{center}
+ OpenMP Distribution \\
+ \includegraphics[width=7.5cm]{chain1}
+\end{center}
+\column[t]{0.4\textwidth}
+\begin{center}
+ Cores \\
+ \includegraphics[width=4cm]{cores}
+\end{center}
+\end{columns}
+\end{frame}
+
+
+\subsection{GRASS GIS}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{GRASS GIS framework}
+
+\begin{center}
+ \includegraphics[width=8.5cm]{architecture_implementation}
+\end{center}
+
+\begin{block}{metaModule concept}
+{\bf pyGRASS:} vertical integration of GRASS GIS modules\\
+{\bf GRASS GIS modules:} [C+OpenMP]
+\end{block}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{pyGRASS}
+
+\begin{center}
+ Summary for Landsat 7 pyGRASS MetaModule
+ \includegraphics[width=10cm]{pyGRASS1}\\
+ \href{http://grasswiki.osgeo.org/wiki/Python/pygrass}{http://grasswiki.osgeo.org/wiki/Python/pygrass}
+\end{center}
+
+\end{frame}
+
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Future: 128-cores from Tile-GX}
+
+\begin{columns}[l]
+\column[t]{0.5\textwidth}
+\begin{center}
+ 64-core Tile-GX\newline\linebreak
+ \includegraphics[width=5cm]{TILE-Gx_Block_Diagram_large}
+\end{center}
+\column[t]{0.5\textwidth}
+\begin{center}
+ Dual Tile-GX on {\small $1/2$} rack board\newline\linebreak
+ \includegraphics[width=5cm]{tilera_quanta_sq2_mobo}
+\end{center}
+
+\end{columns}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Future: 120-cores from Xeon Phi}
+
+\begin{columns}[l]
+\column[t]{0.5\textwidth}
+\begin{center}
+ 60-core Phi\newline\linebreak
+ \includegraphics[width=5cm]{xeon-phi-oh}
+\end{center}
+\column[t]{0.5\textwidth}
+\begin{center}
+ Dual Phi in Gygabyte cage\newline\linebreak
+ \includegraphics[width=5cm]{Gigabyte-GS-R22PHL-Xeon-Phi-Cage-600x440}
+\end{center}
+
+\end{columns}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Outlooks}
+
+\begin{itemize}
+ \item {\bf Crunch (0):} Multi-Cores Hardware (Tile-GX, Xeon Phi)
+ \item {\bf Crunch (1):} Multi-GPU distribution (OpenCL, CUDA)
+ \item {\bf Crunch (2):} Multi-CPU distribution (MPI)
+ \item {\bf Think (1):} TSEB to test/fix
+ \item {\bf Think (2):} SEBS to complete
+ \item {\bf More (1):} ETLook to digest and code
+ \item {\bf More (2):} MODIS and Landsat archives under close pipe distance?
+\end{itemize}
+
+\end{frame}
+
+\section{Conclusions}
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Conclusions}
+
+\begin{block}{Distributed ET models benchmarking setup with OSGEO tools}
+\begin{itemize}
+ \item {\bf GDAL:} C+OpenMP, core-based scaling\\
+
+ \item {\bf GRASS GIS:} pyGRASS for metaModule, C+OpenMP inside modules\\
+
+ \item {\bf Targets:} MODIS (Terra/Aqua), Landsat (all), Aster
+\end{itemize}
+\end{block}
+
+\end{frame}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\begin{frame}[fragile]{Thank You}
+
+\begin{center}
+ \includegraphics[width=3cm]{OpenInnovation}
+\end{center}
+
+\end{frame}
+
+\end{document}
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.toc
===================================================================
--- grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.toc (rev 0)
+++ grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.toc 2014-09-03 09:41:04 UTC (rev 61786)
@@ -0,0 +1,11 @@
+\beamer at endinputifotherversion {3.33pt}
+\beamer at sectionintoc {1}{Introduction}{4}{0}{1}
+\beamer at sectionintoc {2}{Evapotranspiration Modeling}{5}{0}{2}
+\beamer at subsectionintoc {2}{1}{Overview}{5}{0}{2}
+\beamer at subsectionintoc {2}{2}{ET examples}{6}{0}{2}
+\beamer at sectionintoc {3}{Frameworks}{11}{0}{3}
+\beamer at subsectionintoc {3}{1}{Chain processing}{11}{0}{3}
+\beamer at subsectionintoc {3}{2}{Blueprint}{12}{0}{3}
+\beamer at subsectionintoc {3}{3}{GDAL}{13}{0}{3}
+\beamer at subsectionintoc {3}{4}{GRASS GIS}{15}{0}{3}
+\beamer at sectionintoc {4}{Conclusions}{20}{0}{4}
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.vrb
===================================================================
--- grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.vrb (rev 0)
+++ grass-promo/grasslecture/20131031_Tokyo_FOSS4G/ETb.vrb 2014-09-03 09:41:04 UTC (rev 61786)
@@ -0,0 +1,9 @@
+\frametitle{Thank You}
+
+\vspace{50mm}
+\begin{flushright}
+ \includegraphics[width=3cm]{iwmi}
+ \hspace{10mm}
+ \includegraphics[width=2cm]{etb_qr}
+\end{flushright}
+
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+ application/octet-stream
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+ application/octet-stream
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+ application/octet-stream
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/Makefile
===================================================================
--- grass-promo/grasslecture/20131031_Tokyo_FOSS4G/Makefile (rev 0)
+++ grass-promo/grasslecture/20131031_Tokyo_FOSS4G/Makefile 2014-09-03 09:41:04 UTC (rev 61786)
@@ -0,0 +1,39 @@
+# autor: Martin Landa, Vaclav Petras
+# do grepu by melo prijit neco jako labes may change (viz doxygen latex makefile)
+
+FILE=ETb
+
+SVGFILES = $(shell ls *.svg)
+SVGPDF = $(patsubst %.svg, %.pdf, $(SVGFILES))
+
+all: $(FILE).pdf
+
+$(FILE).pdf: *.tex Makefile
+ make pdf
+ @if grep "No file $(FILE).[aux|toc|nav]" $(FILE).log >/dev/null 2>&1 ; then \
+ make pdf; \
+ fi
+
+pdf: fig
+ #sed -i 's/\\notestrue/%\\notestrue/g' $(FILE).tex
+ echo "%\\\\notestrue" > tmpnotessettings.tex
+ pdflatex $(FILE).tex
+
+notes: fig
+ #sed -i 's/%\\notestrue/\\notestrue/g' $(FILE).tex
+ echo "\\\\notestrue" > tmpnotessettings.tex
+ pdflatex $(FILE).tex
+ pdflatex handoutpdfpages.tex
+
+fig: $(SVGPDF)
+
+$(SVGPDF): %.pdf: %.svg
+ inkscape -z --export-pdf=$@ --export-area-drawing --export-dpi=300 $<
+
+clean:
+ rm -f *~ *.aux *.log *.out *.toc *.nav *.snm *.vrb
+ rm -f $(SVGPDF)
+
+distclean:
+ make clean
+ rm -f $(FILE).pdf
Added: grass-promo/grasslecture/20131031_Tokyo_FOSS4G/OSGeo_logo.png
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+ application/octet-stream
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===================================================================
--- grass-promo/grasslecture/20131031_Tokyo_FOSS4G/SVG/GDALLogoColor.svg (rev 0)
+++ grass-promo/grasslecture/20131031_Tokyo_FOSS4G/SVG/GDALLogoColor.svg 2014-09-03 09:41:04 UTC (rev 61786)
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