[GRASS-dev] Re: r.sun and definition of numpartitions?

Markus Neteler neteler at osgeo.org
Tue Dec 30 16:27:01 EST 2008


On Sun, Dec 28, 2008 at 1:18 PM, Markus Neteler <neteler at osgeo.org> wrote:
> Hi,
>
> I am planning to calculate energy maps based on a high res
> DEM (458890698 cells, FCELL type). I'll use a multi-core
> computer with several GB of RAM in a cluster environment.
>
> How should I calculate the "numpartitions"? What is the expected
> memory demand? I have to tell the job scheduler how much
> memory I need for each process - I want to calculate daily
> energy maps, so submit each day to a node of the cluster.

Here the answer from the author:

On Tue, Dec 30, 2008 at 9:34 PM,  <thomas.huld at jrc.it> wrote:
> Ciao Markus,
>
> I had a look at the source code. Most of the memory is used to store the
> rasters (or part of the rasters if you use numpartitions>1).
>
> How much depends on the options you use. I have made a little table of the
> input and output options and the amount of memory the use per pixel. The
> addition (if) means that it is optional, so you may have from 1 to 6 output
> rasters. The output rasters are not partitioned, only the input rasters:
>
> Output rasters
>
> incidout (if) float
> insol_time (if) float
> beam_rad (if) float
> diff_rad (if) float
> refl_rad (if) float
> glob_rad (if) float
>
> Input rasters. Size should be divided by numpartitions:
>
> elevation float
> slopein (if) float
> aspin (if) float
> linkein  float
> albedo (if) float
> latin (if) float
> longin (if) float
> coefbh  float
> coefdh  float
> horizon (if) numhorizonstep bytes
>
> A float is 4 bytes, so you can calculate the memory usage yourself.
> Horizon values are stored in the program as 1-byte integers to save memory.
>
> I just tried one example, and the expected memory used was 252000 KB while
> the actual memory used (according to "ps aux") is 259000KB. I guess the
> rest is pointers, code and smaller arrays.
>
> Hope this helps.
>
> Thomas

I'll add that to the manual in condensed form.

Markus


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