[GRASS-dev] installing v.kriging addon fails

Anna Petrášová kratochanna at gmail.com
Tue Sep 29 06:46:47 PDT 2015


On Tue, Sep 29, 2015 at 8:25 AM, Moritz Lennert <
mlennert at club.worldonline.be> wrote:

> On 29/09/15 11:09, Paulo van Breugel wrote:
>
>> Installing v.kriging (on GRASS dev, Linux) addons fails with the
>> following:
>>
>> GRASS 7.1.svn (latlon):~ > g.extension v.kriging
>> WARNING: Extension <v.kriging> already installed. Re-installing...
>> Fetching <v.kriging> from GRASS GIS Addons repository (be patient)...
>> Compiling...
>> In file included from geostat.c:1:0:
>> local_proto.h:72:3: error: unknown type name ‘mat_struct’
>>     mat_struct *trend;
>>     ^
>> local_proto.h:113:3: error: unknown type name ‘mat_struct’
>>     mat_struct *gamma;    // experimental variogram matrix
>>     ^
>> local_proto.h:124:3: error: unknown type name ‘mat_struct’
>>     mat_struct *A;           // plan matrix
>>     ^
>> local_proto.h:125:3: error: unknown type name ‘mat_struct’
>>     mat_struct *T;           // coefficients of theoretical variogram
>>     ^
>> local_proto.h:126:3: error: unknown type name ‘mat_struct’
>>     mat_struct *GM;          // GM = theor_var(dist: input, output points)
>>     ^
>> local_proto.h:218:1: error: unknown type name ‘mat_struct’
>>   mat_struct *LSM(mat_struct *, mat_struct *);
>>   ^
>> local_proto.h:218:17: error: unknown type name ‘mat_struct’
>>   mat_struct *LSM(mat_struct *, mat_struct *);
>>                   ^
>> local_proto.h:218:31: error: unknown type name ‘mat_struct’
>>   mat_struct *LSM(mat_struct *, mat_struct *);
>>                                 ^
>> local_proto.h:219:1: error: unknown type name ‘mat_struct’
>>   mat_struct *nonlin_LMS(int , double *, double *);
>>   ^
>> local_proto.h:226:24: error: unknown type name ‘mat_struct’
>>   double bivar_sill(int, mat_struct *);
>>                          ^
>> local_proto.h:245:68: error: unknown type name ‘mat_struct’
>>   void write2file_variogram_E(struct int_par *, struct parameters *,
>> mat_struct *);
>>                                                                      ^
>> local_proto.h:250:1: error: unknown type name ‘mat_struct’
>>   mat_struct *set_up_G(struct points *, struct parameters *, struct
>> write *);
>>   ^
>> local_proto.h:251:1: error: unknown type name ‘mat_struct’
>>   mat_struct *set_up_g0(struct int_par *, struct points *, struct ilist
>> *, double *, struct parameters *);
>>   ^
>> local_proto.h:252:1: error: unknown type name ‘mat_struct’
>>   mat_struct *submatrix(struct ilist *, mat_struct *, struct write *);
>>   ^
>> local_proto.h:252:39: error: unknown type name ‘mat_struct’
>>   mat_struct *submatrix(struct ilist *, mat_struct *, struct write *);
>>                                         ^
>> local_proto.h:253:49: error: unknown type name ‘mat_struct’
>>   double result(struct points *, struct ilist *,  mat_struct *);
>>                                                   ^
>> geostat.c: In function ‘E_variogram’:
>> geostat.c:101:5: error: unknown type name ‘mat_struct’
>>       mat_struct *gamma_M;        // gamma matrix (hz, vert or bivar)
>>       ^
>> geostat.c:102:5: error: unknown type name ‘mat_struct’
>>       mat_struct *c_M;            // matrix of # of dissimilarities
>>       ^
>> geostat.c:145:9: warning: assignment makes pointer from integer without
>> a cast [enabled by default]
>>       c_M = G_matrix_init(nrows, ncols, nrows);   // temporal matrix of
>> counts
>>           ^
>> geostat.c:146:13: warning: assignment makes pointer from integer without
>> a cast [enabled by default]
>>       gamma_M = G_matrix_init(nrows, ncols, nrows);       // temporal
>> matrix (vector) of gammas
>>               ^
>> geostat.c:158:13: error: request for member ‘vals’ in something not a
>> structure or union
>>       c = &c_M->vals[0];
>>               ^
>> geostat.c:159:21: error: request for member ‘vals’ in something not a
>> structure or union
>>       gamma = &gamma_M->vals[0];
>>                       ^
>> geostat.c:308:21: warning: assignment makes pointer from integer without
>> a cast [enabled by default]
>>       var_pars->gamma = G_matrix_copy(gamma_M);
>>                       ^
>> geostat.c: In function ‘ordinary_kriging’:
>> geostat.c:516:5: error: unknown type name ‘mat_struct’
>>       mat_struct *GM;
>>       ^
>> geostat.c:517:5: error: unknown type name ‘mat_struct’
>>       mat_struct *GM_sub;         // submatrix of selected points
>>       ^
>> geostat.c:518:5: error: unknown type name ‘mat_struct’
>>       mat_struct *GM_Inv;         // inverted GM (GM_sub) matrix
>>       ^
>> geostat.c:519:5: error: unknown type name ‘mat_struct’
>>       mat_struct *g0;             // diffences between known and unknown
>> values = theor_var(dist)
>>       ^
>> geostat.c:520:5: error: unknown type name ‘mat_struct’
>>       mat_struct *w0;             // weights of values located on the
>> input points
>>       ^
>> geostat.c:545:17: warning: assignment makes pointer from integer without
>> a cast [enabled by default]
>>       var_par->GM = G_matrix_copy(GM);    // copy matrix because of
>> cross validation
>>                   ^
>> geostat.c:589:28: warning: assignment makes pointer from integer without
>> a cast [enabled by default]
>>                       GM_sub = submatrix(list, GM, report);       //
>> make submatrix for selected points
>>                              ^
>> geostat.c:590:28: warning: assignment makes pointer from integer without
>> a cast [enabled by default]
>>                       GM_Inv = G_matrix_inverse(GM_sub);  // invert
>> submatrix
>>                              ^
>> geostat.c:594:24: warning: assignment makes pointer from integer without
>> a cast [enabled by default]
>>                       w0 = G_matrix_product(GM_Inv, g0);  // Vector of
>> weights, condition SUM(w) = 1 in last row
>>                          ^
>> make: *** [OBJ.x86_64-unknown-linux-gnu/geostat.o] Error 1
>> ERROR: Compilation failed, sorry. Please check above error messages.
>>
>
> mat_struct is defined in include/la.h. I'm not 100% sure, but IIUC, you
> might have to compile GRASS with blas/lapack support for this to work.
>

Yes, --with-blas and --with-lapack work for me.

Anna

>
> Moritz
>
>
>
> Moritz
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> grass-dev at lists.osgeo.org
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>
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