[GRASS-dev] Error: undefined reference to `OGR_GT_Flatten' when compiling grass with GDAL
Andre Hollstein
andre.hollstein at gfz-potsdam.de
Tue Jan 5 07:59:41 PST 2016
Dear GRASS developers,
I'm receiving errors when trying to compile GRASS from sources with GDAL
support. I have searched the archives but was not successful. I'm glad
for any help.
My minimal setup is like this:
>> uname -a
Linux [...] 3.11.10-25-desktop #1 SMP PREEMPT Wed Dec 17 17:57:03 UTC
2014 (8210f77) x86_64 x86_64 x86_64 GNU/Linux
>> ./configure --prefix $prefix --without-tiff
--with-gdal=$prefix_opt/bin/gdal-config
--with-proj-share=$prefix_opt/share/proj
--with-proj-libs=$prefix_opt/lib
--with-proj-includes=$prefix_opt/include --without-opengl --without-fftw
--without-freetype
GRASS is now configured for: x86_64-unknown-linux-gnu
Source directory:
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2
Build directory:
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2
Installation directory: ${prefix}/grass-7.0.2
Startup script in directory:${exec_prefix}/bin
C compiler: gcc -g -O2
C++ compiler: c++ -g -O2
Building shared libraries: yes
OpenGL platform: none
MacOSX application: no
MacOSX architectures:
MacOSX SDK:
BLAS support: no
C++ support: yes
Cairo support: yes
DWG support: no
FFTW support: no
FreeType support: no
GDAL support: yes
GEOS support: no
LAPACK support: no
Large File support (LFS): yes
libLAS support: no
MySQL support: no
NetCDF support: no
NLS support: no
ODBC support: no
OGR support: yes
OpenCL support: no
OpenGL support: no
OpenMP support: no
PNG support: yes
POSIX thread support: no
PostgreSQL support: no
Readline support: no
Regex support: yes
SQLite support: yes
TIFF support: no
wxWidgets support: no
X11 support: yes
>> make
[now only the last lines]
/usr/bin/install -c -m 644 GPL.TXT
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/GPL.TXT
/usr/bin/install -c -m 644 contributors.csv
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/contributors.csv
/usr/bin/install -c -m 644 contributors_extra.csv
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/contributors_extra.csv
/usr/bin/install -c -m 644 translators.csv
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/translators.csv
make[1]: Leaving directory
`/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2'
make manifests
make[1]: Entering directory
`/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2'
make[1]: Nothing to be done for `manifests'.
make[1]: Leaving directory
`/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2'
GRASS GIS 7.0.2 r00000 compilation log
--------------------------------------------------
Started compilation: Tue Jan 5 16:37:22 CET 2016
--
Errors in:
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/display/d.path
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/display/d.vect
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/display/d.vect.chart
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/display/d.vect.thematic
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/general/g.copy
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/general/g.findfile
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/general/g.list
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/general/g.region
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/general/g.remove
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/general/g.rename
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/general/manage/lister
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/raster/r.carve
[...]
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.list
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.db.select
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.export
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.extract
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.import
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.what.strds
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.observe.strds
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/temporal/t.vect.univar
--
In case of errors please change into the directory with error and run
'make'.
If you get multiple errors, you need to deal with them in the order they
appear in the error log. If you get an error building a library, you will
also get errors from anything which uses the library.
--
Finished compilation: Tue Jan 5 16:41:53 CET 2016
make: *** [default] Error 1
Then I followed the advice:
>>cd
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/display/d.path
>> make
: && gcc
-L/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/lib
-L/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/lib
-Wl,--export-dynamic
-Wl,-rpath-link,/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/lib
-o
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/bin/d.path
OBJ.x86_64-unknown-linux-gnu/main.o
OBJ.x86_64-unknown-linux-gnu/select.o -lgrass_display.7.0.2
-lgrass_vector.7.0.2 -lgrass_gis.7.0.2 -lm
/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/lib/libgrass_vector.7.0.2.so:
undefined reference to `OGR_GT_Flatten'
collect2: error: ld returned 1 exit status
make: ***
[/misc/fluo6/andre/projekte/custom_gfz_python/tmp/grass/grass-7.0.2/dist.x86_64-unknown-linux-gnu/bin/d.path]
Error 1
So the error seem to be related to GDAL. I checked:
>>cat $prefix_opt/bin/gdal-config
#!/bin/sh
CONFIG_LIBS="-L/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt/lib
-lgdal"
CONFIG_DEP_LIBS=" -lfreexl -L/usr/lib64 -lgeos_c -lsqlite3 -lodbc
-lodbcinst -lexpat -lxerces-c -lpthread
-L/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt/lib
-lopenjp2 -L/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt
-L/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt/lib
-ljasper -lgif -ljpeg
-L/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt/lib -ltiff
-lpng -L/usr/lib/postgresql92/lib64 -lpq -lz -lpthread -lm -lrt -ldl
-lpcre -lcurl "
CONFIG_PREFIX="/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt"
CONFIG_CFLAGS="-I/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt/include"
CONFIG_DATA="/misc/fluo6/andre/projekte/custom_gfz_python/python_GFZ/opt/share/gdal"
CONFIG_VERSION="2.0.1"
CONFIG_OGR_ENABLED=yes
CONFIG_FORMATS="gxf gtiff hfa aigrid aaigrid ceos ceos2 iso8211 xpm sdts
raw dted mem jdem envisat elas fit vrt usgsdem l1b nitf bmp pcidsk
airsar rs2 ilwis rmf leveller sgi srtmhgt idrisi gsg ingr ers jaxapalsar
dimap gff cosar pds adrg coasp tsx terragen blx msgn til r northwood
saga xyz hf2 kmlsuperoverlay ctg e00grid zmap ngsgeoid iris map wcs wms
plmosaic grib bsb openjpeg jpeg2000 gif jpeg png pcraster rik ozi pdf
rasterlite mbtiles postgisraster arg"
usage()
Which looks ok. I compiled gdal with success like this:
./configure --prefix $prefix_opt \
--with-python=yes --with-openjpeg=$prefix_opt --with-jasper=$prefix_opt \
--with-libtiff=$prefix_opt --without-libtool \
--with-hdf4=no --with-hdf5=no --with-netcdf=no \
--with-geotiff=internal \
--without-grass
Any ideas on how to proceed debugging? Now I'm lost.
Kind Regards, André Hollstein
--
Dr. André Hollstein
Sektion 1.4 Fernerkundung
Tel.: +49 (0)331/288-28969
Fax: +49 (0)331/288-28969
E-Mail: andre.hollstein at gfz-potsdam.de
___________________________________
Helmholtz-Zentrum Potsdam
Deutsches GeoForschungsZentrum GFZ
Stiftung des öff. Rechts Land Brandenburg
Telegrafenberg, 14473 Potsdam
Haus 17, Raum 20.23
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