[GRASS-dev] g.extension, svn, and Mac

Wed Aug 5 14:46:19 PDT 2020

This error implies that you need the 10.14.sdk folder. Why would that be so? That would be a problem.

Michael
____________________
C. Michael Barton
Director, Center for Social Dynamics & Complexity
Director, Network for Computational Modeling in Social & Ecological Sciences
Professor of Anthropology, School of Human Evolution & Social Change
Head, Graduate Faculty in Complex Adaptive Systems Science
Arizona State University

voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
www: 'http://www.public.asu.edu/~cmbarton, https://complexity.asu.edu/csdc'

On Aug 5, 2020, at 2:39 PM, Steven Pawley <dr.stevenpawley at gmail.com<mailto:dr.stevenpawley at gmail.com>> wrote:

Hi Michael,

Thanks for updating. I can still install python-based extensions without any error, however I still get the same error for compiled code:

g.extension extension=r.fill.gaps
Fetching <r.fill.gaps> from GRASS GIS Addons repository (be patient)...
Compiling...
clang-10: warning: no such sysroot directory:
'/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
cell_funcs.c:21:10: fatal error: 'math.h' file not found
#include <math.h>
         ^~~~~~~~
1 error generated.
make: *** [OBJ.x86_64-apple-darwin19.6.0/cell_funcs.o] Error
1
ERROR: Compilation failed, sorry. Please check above error messages.

Steve

On Aug 5, 2020, at 2:00 PM, Michael Barton <Michael.Barton at asu.edu<mailto:Michael.Barton at asu.edu>> wrote:

Steve,

I just now posted a new updated GRASS 7.9dev that includes svn in the app. It solved the g.extension problem for me. Can you test and see if it solves it for you too?

Michael
____________________
C. Michael Barton
Director, Center for Social Dynamics & Complexity
Director, Network for Computational Modeling in Social & Ecological Sciences
Professor of Anthropology, School of Human Evolution & Social Change
Head, Graduate Faculty in Complex Adaptive Systems Science
Arizona State University

voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
www: 'http://www.public.asu.edu/~cmbarton<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, https://complexity.asu.edu/csdc'<https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=>

On Aug 4, 2020, at 11:59 AM, Michael Barton <Michael.Barton at asu.edu<mailto:Michael.Barton at asu.edu>> wrote:

I'm pretty sure this happened when I installed developer tools 11.5

I want to make sure that anyone using the binaries can do so without having to separately install any dependencies. So I'll see what happens if I just include svn in the app. I will need to test on a system that suffers from this lack.

Michael
____________________
C. Michael Barton
Director, Center for Social Dynamics & Complexity
Director, Network for Computational Modeling in Social & Ecological Sciences
Professor of Anthropology, School of Human Evolution & Social Change
Head, Graduate Faculty in Complex Adaptive Systems Science
Arizona State University

voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
www: 'http://www.public.asu.edu/~cmbarton<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, https://complexity.asu.edu/csdc'<https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=>

On Aug 4, 2020, at 11:56 AM, Steven Pawley <dr.stevenpawley at gmail.com<mailto:dr.stevenpawley at gmail.com>> wrote:

Hi Michael,

Right, I do have svn installed via Homebrew (I get  'Type 'svn help' for usage.’), so that probably explains why g.extension works for me overall, apart from the issue with finding the MacOS SDK.

Steve

On Aug 4, 2020, at 11:27 AM, Michael Barton <Michael.Barton at asu.edu<mailto:Michael.Barton at asu.edu>> wrote:

Steven,

What happens if you open a terminal window and type 'svn' followed by a return?

Michael
____________________
C. Michael Barton
Director, Center for Social Dynamics & Complexity
Director, Network for Computational Modeling in Social & Ecological Sciences
Professor of Anthropology, School of Human Evolution & Social Change
Head, Graduate Faculty in Complex Adaptive Systems Science
Arizona State University

voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
www: 'http://www.public.asu.edu/~cmbarton<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=6KybHpYJMo7V86xk_1VxAmD-_UolxXaQfLvYShRFgpk&e=>, https://complexity.asu.edu/csdc'<https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=abWZQP3dzmM5KTmBUXPwvqbzQUlMgfhQzUGEr0HevTo&e=>

On Aug 3, 2020, at 6:53 PM, Steven Pawley <dr.stevenpawley at gmail.com<mailto:dr.stevenpawley at gmail.com>> wrote:

Perhaps a different issue,  but I can install extensions, but only pure python-based extensions. Anything that requires compilation of C code fails.

For example, when using the latest GRASS GIS binary (7.9, 25th July 2020 build), this works with r.texture.tiled:

Fetching <r.texture.tiled> from GRASS GIS Addons repository (be patient)...
Compiling...
Installing...
Updating extensions metadata file...
Updating extension modules metadata file...
Installation of <r.texture.tiled> successfully finished

But for example, r.fill.gaps does not:

g.extension extension=r.fill.gaps
Fetching <r.fill.gaps> from GRASS GIS Addons repository (be patient)...
Compiling...
clang-10: warning: no such sysroot directory:
'/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot]
cell_funcs.c:21:10: fatal error: 'math.h' file not found
#include <math.h>
         ^~~~~~~~
1 error generated.
make: *** [OBJ.x86_64-apple-darwin19.5.0/cell_funcs.o] Error
1
ERROR: Compilation failed, sorry. Please check above error messages.

The 7.9-dev build throws an error because it appears to be still looking for components based on your system, specifically.,The 7.8.4 binary (16th July 2020 build) also throws the same error. I’m running the MacOS 10.15.6.

Steve

On Aug 2, 2020, at 4:44 PM, Michael Barton <Michael.Barton at asu.edu<mailto:Michael.Barton at asu.edu>> wrote:

I just learned yesterday, when I tried to install something from g.extension that:

1. g.extension uses svn to download packages, and
2. Apple stopped including svn with the current OS (10.15.x) and its developer tools

I don't know if anyone else has run into this yet, but it could be an increasingly sticky issue going forward. Unless there are plans to change how g.extension gets packages, I suppose I need to include it in the Mac app bundle.

Has anyone else hit this yet?

Michael
____________________
C. Michael Barton
Director, Center for Social Dynamics & Complexity
Director, Network for Computational Modeling in Social & Ecological Sciences
Professor of Anthropology, School of Human Evolution & Social Change
Head, Graduate Faculty in Complex Adaptive Systems Science
Arizona State University

voice:  480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
fax: 480-965-7671 (SHESC),  480-727-0709 (CSDC)
www: 'http://www.public.asu.edu/~cmbarton<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=wLo54OaOggTCfa9dMnza-vU7d8tllnb8G9z7MW3tF38&e=>, https://complexity.asu.edu/csdc'<https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=-cLS2YOXOnAMIbnQqtJQAbmXsjh9CVUVr2PzI6yj6FE&e=>

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