[GRASS-dev] GRASS 7.8.5 compile errors
Thomas Adams
tea3rd at gmail.com
Wed Aug 11 12:06:49 PDT 2021
Hi Anna,
Thank you for your help sorting this out... Not surprisingly, I get the
same errors in grass-7.8.6RC2
*Error in /home/teaiii/grass-7.8.5/lib/python/ctypes:*
Error: /usr/include/stdio.h:246: Syntax error at '__filename'
Error: /usr/include/stdio.h:247: Syntax error at '__modes'
Error: /usr/include/stdio.h:252: Syntax error at '__filename'
Error: /usr/include/stdio.h:253: Syntax error at '__modes'
Error: /usr/include/stdio.h:254: Syntax error at '__stream'
Error: /usr/include/stdio.h:304: Syntax error at '__stream'
Error: /usr/include/stdio.h:304: Syntax error at '__buf'
Error: /usr/include/stdio.h:308: Syntax error at '__stream'
Error: /usr/include/stdio.h:308: Syntax error at '__buf'
Error: /usr/include/stdio.h:309: Syntax error at 'size_t'
Error: /usr/include/stdio.h:314: Syntax error at '__stream'
Error: /usr/include/stdio.h:314: Syntax error at '__buf'
Error: /usr/include/stdio.h:326: Syntax error at '__stream'
Error: /usr/include/stdio.h:327: Syntax error at '__format'
Error: /usr/include/stdio.h:332: Syntax error at '__format'
Error: /usr/include/stdio.h:334: Syntax error at '__s'
Error: /usr/include/stdio.h:335: Syntax error at '__format'
Error: /usr/include/stdio.h:341: Syntax error at '__s'
Error: /usr/include/stdio.h:341: Syntax error at '__format'
Error: /usr/include/stdio.h:347: Syntax error at '__format'
Error: /usr/include/stdio.h:349: Syntax error at '__s'
Error: /usr/include/stdio.h:349: Syntax error at '__format'
Error: /usr/include/stdio.h:354: Syntax error at '__s'
Error: /usr/include/stdio.h:355: Syntax error at 'const'
Error: /usr/include/stdio.h:355: Syntax error at '__format'
Error: /usr/include/stdio.h:358: Syntax error at '__s'
Error: /usr/include/stdio.h:359: Syntax error at 'const'
Error: /usr/include/stdio.h:359: Syntax error at '__format'
Error: /usr/include/stdio.h:379: Syntax error at '__fmt'
Error: /usr/include/stdio.h:382: Syntax error at '__fmt'
Error: /usr/include/stdio.h:391: Syntax error at '__stream'
Error: /usr/include/stdio.h:392: Syntax error at '__format'
Error: /usr/include/stdio.h:397: Syntax error at '__format'
Error: /usr/include/stdio.h:399: Syntax error at '__s'
Error: /usr/include/stdio.h:400: Syntax error at '__format'
Error: /usr/include/stdio.h:416: Syntax error at '__stream'
Error: /usr/include/stdio.h:417: Syntax error at '__format'
Error: /usr/include/stdio.h:418: Syntax error at '__format'
Error: /usr/include/stdio.h:419: Syntax error at '__s'
Error: /usr/include/stdio.h:420: Syntax error at '__format'
Error: /usr/include/stdio.h:432: Syntax error at '__s'
Error: /usr/include/stdio.h:432: Syntax error at '__format'
Error: /usr/include/stdio.h:440: Syntax error at '__format'
Error: /usr/include/stdio.h:444: Syntax error at '__s'
Error: /usr/include/stdio.h:445: Syntax error at '__format'
Error: /usr/include/stdio.h:465: Syntax error at '__s'
Error: /usr/include/stdio.h:466: Syntax error at '__format'
Error: /usr/include/stdio.h:468: Syntax error at '__format'
Error: /usr/include/stdio.h:470: Syntax error at '__s'
Error: /usr/include/stdio.h:471: Syntax error at '__format'
Error: /usr/include/stdio.h:564: Syntax error at '__s'
Error: /usr/include/stdio.h:564: Syntax error at 'FILE'
Error: /usr/include/stdio.h:603: Syntax error at '__lineptr'
Error: /usr/include/stdio.h:604: Syntax error at '__n'
Error: /usr/include/stdio.h:605: Syntax error at 'FILE'
Error: /usr/include/stdio.h:606: Syntax error at '__lineptr'
Error: /usr/include/stdio.h:607: Syntax error at '__n'
Error: /usr/include/stdio.h:608: Syntax error at 'FILE'
Error: /usr/include/stdio.h:616: Syntax error at '__lineptr'
Error: /usr/include/stdio.h:617: Syntax error at '__n'
Error: /usr/include/stdio.h:618: Syntax error at '__stream'
Error: /usr/include/stdio.h:626: Syntax error at '__s'
Error: /usr/include/stdio.h:626: Syntax error at '__stream'
Error: /usr/include/stdio.h:646: Syntax error at '__ptr'
Error: /usr/include/stdio.h:647: Syntax error at 'size_t'
Error: /usr/include/stdio.h:647: Syntax error at '__stream'
Error: /usr/include/stdio.h:652: Syntax error at '__ptr'
Error: /usr/include/stdio.h:653: Syntax error at 'size_t'
Error: /usr/include/stdio.h:653: Syntax error at '__s'
Error: /usr/include/stdio.h:673: Syntax error at '__ptr'
Error: /usr/include/stdio.h:674: Syntax error at 'size_t'
Error: /usr/include/stdio.h:674: Syntax error at '__stream'
Error: /usr/include/stdio.h:675: Syntax error at '__ptr'
Error: /usr/include/stdio.h:676: Syntax error at 'size_t'
Error: /usr/include/stdio.h:676: Syntax error at '__stream'
Error: /usr/include/stdio.h:731: Syntax error at '__stream'
Error: /usr/include/stdio.h:731: Syntax error at '__pos'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:101: Syntax error at
'__readfds'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:102: Syntax error at
'__writefds'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:103: Syntax error at
'__exceptfds'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:104: Syntax error at
'__timeout'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:113: Syntax error at
'__readfds'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:114: Syntax error at
'__writefds'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:115: Syntax error at
'__exceptfds'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:116: Syntax error at
'__timeout'
Error: /usr/include/x86_64-linux-gnu/sys/select.h:117: Syntax error at
'__sigmask'
Error: /usr/include/x86_64-linux-gnu/sys/stat.h:205: Syntax error at
'__file'
Error: /usr/include/x86_64-linux-gnu/sys/stat.h:206: Syntax error at '__buf'
Error: /usr/include/x86_64-linux-gnu/sys/stat.h:234: Syntax error at
'__file'
Error: /usr/include/x86_64-linux-gnu/sys/stat.h:235: Syntax error at '__buf'
Error: /usr/include/x86_64-linux-gnu/sys/stat.h:259: Syntax error at
'__file'
Error: /usr/include/x86_64-linux-gnu/sys/stat.h:260: Syntax error at '__buf'
Status: Processing description list.
Status: Writing to OBJ.x86_64-pc-linux-gnu/imagery.py.
Status: Wrapping complete.
double free or corruption (out)
Aborted (core dumped)
make[1]: *** [Makefile:107: OBJ.x86_64-pc-linux-gnu/imagery.py] Error 134
make[1]: Leaving directory '/home/teaiii/grass-7.8.5/lib/python/ctypes'
make: *** [Makefile:86: default] Error 2
*Error in /home/teaiii/grass-7.8.5/vector/v.out.ogr :*
teaiii at tea-Leopard-WS:~/grass-7.8.5/vector/v.out.ogr$ make
VERSION_NUMBER=7.8.5
/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/g.html2man.py
"/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/html/v.out.ogr.html"
"/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1"
Traceback (most recent call last):
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
g.html2man.py", line 45, in main
p.feed(line)
File "/usr/lib/python3.8/html/parser.py", line 111, in feed
self.goahead(0)
File "/usr/lib/python3.8/html/parser.py", line 171, in goahead
k = self.parse_starttag(i)
File "/usr/lib/python3.8/html/parser.py", line 345, in parse_starttag
self.handle_starttag(tag, attrs)
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
line 208, in handle_starttag
while not self.is_allowed(tag):
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
line 204, in is_allowed
return tag not in self.excluded and tag in allowed[self.top()]
KeyError: None
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
g.html2man.py", line 78, in <module>
main()
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
g.html2man.py", line 49, in main
(infile, err.lineno, err.offset, err.msg))
AttributeError: 'KeyError' object has no attribute 'lineno'
make: *** [../../include/Make/Html.make:11:
/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1]
Error 1
*Error in /home/teaiii/grass-7.8.5/man :*
VERSION_NUMBER=7.8.5
/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/g.html2man.py
"/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/html/v.out.ogr.html"
"/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1"
Traceback (most recent call last):
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
g.html2man.py", line 45, in main
p.feed(line)
File "/usr/lib/python3.8/html/parser.py", line 111, in feed
self.goahead(0)
File "/usr/lib/python3.8/html/parser.py", line 171, in goahead
k = self.parse_starttag(i)
File "/usr/lib/python3.8/html/parser.py", line 345, in parse_starttag
self.handle_starttag(tag, attrs)
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
line 208, in handle_starttag
while not self.is_allowed(tag):
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
line 204, in is_allowed
return tag not in self.excluded and tag in allowed[self.top()]
KeyError: None
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
g.html2man.py", line 78, in <module>
main()
File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
g.html2man.py", line 49, in main
(infile, err.lineno, err.offset, err.msg))
AttributeError: 'KeyError' object has no attribute 'lineno'
make[2]: *** [../include/Make/Html.make:11:
/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1]
Error 1
make[2]: Leaving directory '/home/teaiii/grass-7.8.5/man'
make[1]: *** [Makefile:53: manpages] Error 2
make[1]: Leaving directory '/home/teaiii/grass-7.8.5/man'
make: *** [Makefile:46: default] Error 2
Thank you, again!
Best,
Tom
On Wed, Aug 11, 2021 at 12:43 PM Anna Petrášová <kratochanna at gmail.com>
wrote:
>
>
> On Tue, Aug 10, 2021 at 10:06 AM Thomas Adams <tea3rd at gmail.com> wrote:
>
>> Hi all!
>>
>> I just upgraded from Ubuntu 18.04 to 20.04 and have to re-compile/install
>> GRASS 7.8.5. I'm getting these errors:
>>
>> Errors in:
>> /home/teaiii/grass-7.8.5/lib/python/ctypes
>> /home/teaiii/grass-7.8.5/vector/v.out.ogr
>> /home/teaiii/grass-7.8.5/man
>>
>
> What are the actual errors when you go in the directories and run make?
>
>>
>> I'm sure I have created some library incompatibilities, so I'm trying to
>> identify where the problems are. I know I have python 3.8 installed, but
>> when I run python -V I get:
>>
>> Python 2.7.18
>>
>> Do I need to compile against python 3.8; if so, how do I do that?
>>
>> My configure looks like this:
>>
>> CFLAGS="-O2 -Wall" LDFLAGS="-s" ./configure \
>> --enable-64bit \
>> --with-cxx \
>> --enable-largefile=yes \
>> --with-nls \
>> --with-readline \
>> --with-pthread \
>> --with-gdal=/usr/local/bin/gdal-config \
>> --with-proj --with-proj-share=/usr/local/share/proj \
>> --with-proj-includes=/usr/local/include \
>> --with-proj-libs=/usr/local/lib \
>> --with-geos=/usr/local/bin/geos-config \
>> --with-wxwidgets=/usr/local/bin/wx-config \
>> --with-cairo \
>> --with-opengl-libs=/usr/include/GL \
>> --with-freetype=yes \
>> --with-freetype-includes=/usr/include/freetype2/ \
>> --with-postgres=yes \
>> --with-postgres-includes=/usr/local/include \
>> --with-sqlite=yes \
>> --with-mysql=yes \
>> --with-mysql-includes=/usr/include/mysql \
>> --with-odbc=no \
>> --with-blas \
>> --with-lapack \
>> --with-liblas=yes \
>> --with-liblas-config=/usr/bin/liblas-config \
>> --with-netcdf=/usr/local/bin/nc-config \
>> --with-blas-libs=/usr/local/lib \
>> --with-lapack-includes=/usr/include \
>> --with-lapack-libs=/usr/lib \
>> --with-blas-includes=/usr/local/include \
>> --with-zstd \
>> --with-zstd-includes=/usr/local/include \
>> --with-zstd-libs=/usr/local/lib
>>
>> with no errors.
>>
>> Any/all suggestions are appreciated...
>>
>> Regards,
>> Tom
>>
>> --
>>
>> _______________________________________________
>> grass-dev mailing list
>> grass-dev at lists.osgeo.org
>> https://lists.osgeo.org/mailman/listinfo/grass-dev
>>
>
--
Thomas E Adams, III
207 Chowning Place
Blacksburg, VA 24060
tea3rd at gmail.com (personal)
tea at terrapredictions.org (work)
1 (513) 739-9512 (cell)
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