[GRASS-stats] spgrass6 fails to build under R 2.9.1 and Ubuntu
Jaunty 64-bit
Nikos Alexandris
nikos.alexandris at felis.uni-freiburg.de
Mon Jul 27 21:31:29 EDT 2009
Hi "spgrass6" experts!
I am trying to get spgrass6 to work under R 2.9.1 but it fails (to
compile? -- code is below).
Did anybody had this issue recently? Is it a bug?
Thanks, Nikos
---
install.packages("spgrass6", dependencies=TRUE)
Warning in install.packages("spgrass6", dependencies = TRUE) :
argument 'lib' is missing: using '/usr/local/lib/R/site-library'
trying URL 'http://cran.rakanu.com/src/contrib/spgrass6_0.6-6.tar.gz'
Content type 'application/x-gzip' length 332298 bytes (324 Kb)
opened URL
==================================================
downloaded 324 Kb
* Installing *source* package ‘spgrass6’ ...
** R
** inst
** preparing package for lazy loading
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11
Path to GDAL shared files: /usr/local/share/gdal
Loaded PROJ.4 runtime: Rel. 4.6.0, 21 Dec 2007
Path to PROJ.4 shared files: (autodetected)
** help
*** installing help indices
>>> Building/Updating help pages for package 'spgrass6'
Formats: text html latex example
execGRASS text html latex example
gmeta6 text html latex example
initGRASS text html latex example
readRAST6 text html latex example
readVECT6 text html latex example
spgrass6 text html latex example
** building package indices ...
* DONE (spgrass6)
*** glibc detected *** /usr/lib64/R/bin/exec/R: double free or
corruption (fasttop): 0x0000000003112780 ***
======= Backtrace: =========
/lib/libc.so.6[0x7f6a3cbe7cb8]
/lib/libc.so.6(cfree+0x76)[0x7f6a3cbea276]
/usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f6a38afe50d]
/lib/libc.so.6(exit+0x9d)[0x7f6a3cba66ed]
/usr/lib64/R/lib/libR.so[0x7f6a3d0bfae8]
/usr/lib64/R/lib/libR.so(run_Rmainloop+0x55)[0x7f6a3cfedfa5]
/usr/lib64/R/bin/exec/R(main+0x1b)[0x40098b]
/lib/libc.so.6(__libc_start_main+0xe6)[0x7f6a3cb8e5a6]
/usr/lib64/R/bin/exec/R[0x400879]
======= Memory map: ========
00400000-00401000 r-xp 00000000 08:03
145540 /usr/lib/R/bin/exec/R
00600000-00601000 r--p 00000000 08:03
145540 /usr/lib/R/bin/exec/R
00601000-00602000 rw-p 00001000 08:03
145540 /usr/lib/R/bin/exec/R
01bbd000-03de5000 rw-p 01bbd000 00:00 0
[heap]
7f6a2c000000-7f6a2c021000 rw-p 7f6a2c000000 00:00 0
7f6a2c021000-7f6a30000000 ---p 7f6a2c021000 00:00 0
7f6a31f15000-7f6a32068000 r-xp 00000000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f6a32068000-7f6a32267000 ---p 00153000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f6a32267000-7f6a3226f000 r--p 00152000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f6a3226f000-7f6a32271000 rw-p 0015a000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f6a32271000-7f6a32272000 rw-p 7f6a32271000 00:00 0
7f6a32272000-7f6a3228d000 r-xp 00000000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f6a3228d000-7f6a3248d000 ---p 0001b000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f6a3248d000-7f6a3248e000 r--p 0001b000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f6a3248e000-7f6a3248f000 rw-p 0001c000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f6a3248f000-7f6a3249a000 r-xp 00000000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f6a3249a000-7f6a3269a000 ---p 0000b000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f6a3269a000-7f6a3269b000 r--p 0000b000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f6a3269b000-7f6a3269c000 rw-p 0000c000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f6a3269c000-7f6a32752000 r-xp 00000000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f6a32752000-7f6a32951000 ---p 000b6000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f6a32951000-7f6a32957000 r--p 000b5000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f6a32957000-7f6a32958000 rw-p 000bb000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f6a32958000-7f6a32959000 r-xp 00000000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f6a32959000-7f6a32b59000 ---p 00001000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f6a32b59000-7f6a32b5a000 r--p 00001000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f6a32b5a000-7f6a32b5b000 rw-p 00002000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f6a32b5b000-7f6a32b61000 r-xp 00000000 08:03
269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so
7f6a32b61000-7f6a32d60000 ---p 00006000 08:03
269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so
7f6a32d60000-7f6a32d61000 r--p 00005000 08:03
269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so
7f6a32d61000-7f6a32d62000 rw-p 00006000 08:03
269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so
7f6a32d62000-7f6a32d79000 r-xp 00000000 08:03
269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so
7f6a32d79000-7f6a32f78000 ---p 00017000 08:03
269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so
7f6a32f78000-7f6a32f79000 r--p 00016000 08:03
269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so
7f6a32f79000-7f6a32f7a000 rw-p 00017000 08:03
269596 /usr/local/grass-6.4.0svn/lib/libgrass_dig2.6.4.0svn.so
7f6a32f7a000-7f6a32f9a000 r-xp 00000000 08:03
269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so
7f6a32f9a000-7f6a33199000 ---p 00020000 08:03
269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so
7f6a33199000-7f6a3319a000 r--p 0001f000 08:03
269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so
7f6a3319a000-7f6a3319b000 rw-p 00020000 08:03
269594 /usr/local/grass-6.4.0svn/lib/libgrass_dgl.6.4.0svn.so
7f6a3319b000-7f6a331a6000 r-xp 00000000 08:03
269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so
7f6a331a6000-7f6a333a5000 ---p 0000b000 08:03
269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so
7f6a333a5000-7f6a333a6000 r--p 0000a000 08:03
269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so
7f6a333a6000-7f6a333a7000 rw-p 0000b000 08:03
269566 /usr/local/grass-6.4.0svn/lib/libgrass_dbmiclient.6.4.0svn.so
7f6a333a7000-7f6a333ba000 r-xp 00000000 08:03
269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so
7f6a333ba000-7f6a335b9000 ---p 00013000 08:03
269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so
7f6a335b9000-7f6a335ba000 r--p 00012000 08:03
269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so
7f6a335ba000-7f6a335bb000 rw-p 00013000 08:03
269564 /usr/local/grass-6.4.0svn/lib/libgrass_dbmibase.6.4.0svn.so
7f6a335bb000-7f6a33604000 r-xp 00000000 08:03
269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so
7f6a33604000-7f6a33803000 ---p 00049000 08:03
269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so
7f6a33803000-7f6a33804000 r--p 00048000 08:03
269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so
7f6a33804000-7f6a33806000 rw-p 00049000 08:03
269598 /usr/local/grass-6.4.0svn/lib/libgrass_vect.6.4.0svn.so
7f6a33806000-7f6a33807000 rw-p 7f6a33806000 00:00 0
7f6a33807000-7f6a33810000 r-xp 00000000 08:03
269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so
7f6a33810000-7f6a33a10000 ---p 00009000 08:03
269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so
7f6a33a10000-7f6a33a11000 r--p 00009000 08:03
269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so
7f6a33a11000-7f6a33a12000 rw-p 0000a000 08:03
269586 /usr/local/grass-6.4.0svn/lib/libgrass_gproj.6.4.0svn.so
7f6a33a12000-7f6a33a1b000 r-xp 00000000 08:03
269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so
7f6a33a1b000-7f6a33c1a000 ---p 00009000 08:03
269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so
7f6a33c1a000-7f6a33c1b000 r--p 00008000 08:03
269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so
7f6a33c1b000-7f6a33c1c000 rw-p 00009000 08:03
269542 /usr/local/grass-6.4.0svn/lib/libgrass_datetime.6.4.0svn.so
7f6a33c1c000-7f6a33c82000 r-xp 00000000 08:03
269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so
7f6a33c82000-7f6a33e82000 ---p 00066000 08:03
269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so
7f6a33e82000-7f6a33e83000 r--p 00066000 08:03
269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so
7f6a33e83000-7f6a33e85000 rw-p 00067000 08:03
269544 /usr/local/grass-6.4.0svn/lib/libgrass_gis.6.4.0svn.so
7f6a33e85000-7f6a33e8b000 rw-p 7f6a33e85000 00:00 0
7f6a33e8b000-7f6a33e93000 r-xp 00000000 08:03
269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so
7f6a33e93000-7f6a34092000 ---p 00008000 08:03
269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so
7f6a34092000-7f6a34093000 r--p 00007000 08:03
269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so
7f6a34093000-7f6a34094000 rw-p 00008000 08:03
269546 /usr/local/grass-6.4.0svn/lib/libgrass_gmath.6.4.0svn.so
7f6a34094000-7f6a34099000 r-xp 00000000 08:03 269574 Aborted
The downloaded packages are in
‘/tmp/RtmpMaCWFV/downloaded_packages’
Warning message:
In install.packages("spgrass6", dependencies = TRUE) :
installation of package 'spgrass6' had non-zero exit status
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