[GRASS-stats] Re: [Qgis-user] rpy2 isntallation fails under Ubuntu
Jaunty for R 2.9.1
Nikos Alexandris
nikos.alexandris at felis.uni-freiburg.de
Tue Jul 28 09:31:09 EDT 2009
On Tue, 2009-07-28 at 15:08 +0200, Nikos Alexandris wrote:
> On Tue, 2009-07-28 at 14:23 +0200, Robert Nuske wrote:
> > Hi Nikos,
> >
> > I didn't have any problems on jaunty.
> >
> > Downloaded rpy2 to /usr/local/src, gunziped/untared it, changed to rpy2-2.0.6
> > and run 'sudo python setup.py install'
> >
> > This was last week for an r-base-dev from
> > http://cran.at.r-project.org/bin/linux/ubuntu jaunty/
> >
> >
> > cheers,
> > robert
>
> Thanks Robert. I got rid of R 2.9.1 from source and got the deb's from
> the link above. Then rpy2 was successfully installed.
>
> All the best, Nikos
Just wanted to add what I posted in grass-stats:
--%<---%<---%<---%<---%<---%<---%<---%<---%<---%<---%<---
On Tue, 2009-07-28 at 04:08 +0200, Nikos Alexandris wrote:
> Nikos Alexandris wrote:
> > > > I am trying to get spgrass6 to work under R 2.9.1 but it fails
(to
> > > > compile? -- code is below).
My R 2.9.1 was an installation of all debs that are available at "R
binaries" for Ubuntu [1].
Finally I got a tarball [2] and compiled from source. It worked. Seems
that the debs miss some files (perhaps Rmain.c ?).
Regards, Nikos
---
[1] http://cran.r-project.org/bin/linux/ubuntu/jaunty/
[2] http://cran.r-project.org/src/base/R-2/R-2.9.1.tar.gz
--%<---%<---%<---%<---%<---%<---%<---%<---%<---%<---%<---
I had installed the all deb's on my own (and NOT by providing the link
[1] in /etc/apt/sources.list). I could not install "spgrass6".
Then I compiled/installed R 2.9.1 from source and "spgrass6" was
installable... but not rpy2.
Now I removed the "custom" R 2.9.1, copy-pasted the link [1]
in /etc/apt/sources.list and installed R via ubuntu's package manager
(that is: sudo apt-get install r-base r-base-dev. This way I could
install rpy2.
Now, it seems that I have managed to install "spgrass6" (it loads fine)
but whenever I try to load "G <- gmeta6()" in R _OR_ whenever I exit an
R session ( with q() ) I get error messages (again!!).
Don't know what they are, if and how they affect R operations. Some code
below:
# working in R from within a GRASS session
> library(spgrass6)
Loading required package: sp
Loading required package: rgdal
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 1.6.1, released 2009/05/11
Path to GDAL shared files: /usr/local/share/gdal
Loaded PROJ.4 runtime: Rel. 4.6.0, 21 Dec 2007
Path to PROJ.4 shared files: (autodetected)
Loading required package: XML
GRASS GIS interface loaded with GRASS version: 6.4.0svn
and location: wgs84
# loading proj info
G <- gmeta6()
*** glibc detected *** g.region: double free or corruption (fasttop):
0x0000000001530970 ***
======= Backtrace: =========
/lib/libc.so.6[0x7f90d13e3cb8]
/lib/libc.so.6(cfree+0x76)[0x7f90d13e6276]
/usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f90cf54950d]
/lib/libc.so.6(__cxa_finalize+0xb0)[0x7f90d13a2ab0]
/usr/lib/libgeos-3.0.0.so[0x7f90cefbd1e6]
======= Memory map: ========
00400000-0040a000 r-xp 00000000 08:03
26667 /usr/local/grass-6.4.0svn/bin/g.region
00609000-0060a000 r--p 00009000 08:03
26667 /usr/local/grass-6.4.0svn/bin/g.region
0060a000-0060b000 rw-p 0000a000 08:03
26667 /usr/local/grass-6.4.0svn/bin/g.region
0152f000-01550000 rw-p 0152f000 00:00 0
[heap]
7f90c8000000-7f90c8021000 rw-p 7f90c8000000 00:00 0
7f90c8021000-7f90cc000000 ---p 7f90c8021000 00:00 0
7f90cc89c000-7f90cc89f000 r-xp 00000000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f90cc89f000-7f90cca9e000 ---p 00003000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f90cca9e000-7f90cca9f000 rw-p 00002000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f90cca9f000-7f90ccb04000 r-xp 00000000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f90ccb04000-7f90ccd03000 ---p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f90ccd03000-7f90ccd04000 r--p 00064000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f90ccd04000-7f90ccd06000 rw-p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f90ccd06000-7f90ccd16000 r-xp 00000000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f90ccd16000-7f90ccf15000 ---p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f90ccf15000-7f90ccf16000 r--p 0000f000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f90ccf16000-7f90ccf17000 rw-p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f90ccf17000-7f90ccfba000 r-xp 00000000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f90ccfba000-7f90cd1b9000 ---p 000a3000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f90cd1b9000-7f90cd1c3000 r--p 000a2000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f90cd1c3000-7f90cd1c4000 rw-p 000ac000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f90cd1c4000-7f90cd1dd000 r-xp 00000000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f90cd1dd000-7f90cd3dc000 ---p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f90cd3dc000-7f90cd3dd000 r--p 00018000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f90cd3dd000-7f90cd3de000 rw-p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f90cd3de000-7f90cd3ec000 r-xp 00000000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f90cd3ec000-7f90cd5eb000 ---p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f90cd5eb000-7f90cd5ec000 r--p 0000d000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f90cd5ec000-7f90cd5ed000 rw-p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f90cd5ed000-7f90cd601000 r-xp 00000000 08:03
7742 /lib/libresolv-2.9.so
7f90cd601000-7f90cd801000 ---p 00014000 08:03
7742 /lib/libresolv-2.9.so
7f90cd801000-7f90cd802000 r--p 00014000 08:03
7742 /lib/libresolv-2.9.so
7f90cd802000-7f90cd803000 rw-p 00015000 08:03
7742 /lib/libresolv-2.9.so
7f90cd803000-7f90cd805000 rw-p 7f90cd803000 00:00 0
7f90cd805000-7f90cd807000 r-xp 00000000 08:03
2596 /lib/libkeyutils-1.2.so
7f90cd807000-7f90cda06000 ---p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7f90cda06000-7f90cda07000 r--p 00001000 08:03
2596 /lib/libkeyutils-1.2.so
7f90cda07000-7f90cda08000 rw-p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7f90cda08000-7f90cda0f000 r-xp 00000000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f90cda0f000-7f90cdc0e000 ---p 00007000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f90cdc0e000-7f90cdc0f000 r--p 00006000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f90cdc0f000-7f90cdc10000 rw-p 00007000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f90cdc10000-7f90cdc33000 r-xp 00000000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f90cdc33000-7f90cde32000 ---p 00023000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f90cde32000-7f90cde34000 r--p 00022000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f90cde34000-7f90cde35000 rw-p 00024000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f90cde35000-7f90cde79000 r-xp 00000000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f90cde79000-7f90ce079000 ---p 00044000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f90ce079000-7f90ce07a000 r--p 00044000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f90ce07a000-7f90ce07c000 rw-p 00045000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f90ce07c000-7f90ce07e000 rw-p 7f90ce07c000 00:00 0
7f90ce07e000-7f90ce087000 r-xp 00000000 08:03
7729 /lib/libcrypt-2.9.so
7f90ce087000-7f90ce286000 ---p 00009000 08:03
7729 /lib/libcrypt-2.9.so
7f90ce286000-7f90ce287000 r--p 00008000 08:03
7729 /lib/libcrypt-2.9.so
7f90ce287000-7f90ce288000 rw-p 00009000 08:03
7729 /lib/libcrypt-2.9.so
7f90ce288000-7f90ce2b6000 rw-p 7f90ce288000 00:00 0
7f90ce2b6000-7f90ce2e2000 r-xp 00000000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f90ce2e2000-7f90ce4e1000 ---p 0002c000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f90ce4e1000-7f90ce4e2000 r--p 0002b000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f90ce4e2000-7f90ce4e3000 rw-p 0002c000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f90ce4e3000-7f90ce4e6000 r-xp 00000000 08:03
2572 /lib/libcom_err.so.2.1
7f90ce4e6000-7f90ce6e5000 ---p 00003000 08:03
2572 /lib/libcom_err.so.2.1
7f90ce6e5000-7f90ce6e6000 r--p 00002000 08:03
2572 /lib/libcom_err.so.2.1
7f90ce6e6000-7f90ce6e7000 rw-p 00003000 08:03
2572 /lib/libcom_err.so.2.1
7f90ce6e7000-7f90ce77f000 r-xp 00000000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f90ce77f000-7f90ce97e000 ---p 00098000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f90ce97e000-7f90ce981000 r--p 00097000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f90ce981000-7f90ce982000 rw-p 0009a000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f90ce982000-7f90ceae5000 r-xp 00000000 08:03
129184 /lib/libcrypto.so.0.9.8
7f90ceae5000-7f90cece4000 ---p 00163000 08:03
129184 /lib/libcrypto.so.0.9.8
7f90cece4000-7f90cecf1000 r--p 00162000 08:03
129184 /lib/libcrypto.so.0.9.8
7f90cecf1000-7f90ced07000 rw-p 0016f000 08:03
129184 /lib/libcrypto.so.0.9.8
7f90ced07000-7f90ced0b000 rw-p 7f90ced07000 00:00 0
7f90ced0b000-7f90ced54000 r-xp 00000000 08:03
129185 /lib/libssl.so.0.9.8
7f90ced54000-7f90cef54000 ---p 00049000 08:03
129185 /lib/libssl.so.0.9.8
7f90cef54000-7f90cef55000 r--p 00049000 08:03
129185 /lib/libssl.so.0.9.8
7f90cef55000-7f90cef5a000 rw-p 0004a000 08:03
129185 /lib/libssl.so.0.9.8
7f90cef5a000-7f90cf085000 r-xp 00000000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7f90cf085000-7f90cf284000 ---p 0012b000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7f90cf284000-7f90cf28b000 rw-p 0012a000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7f90cf28b000-7f90cf2a1000 r-xp 00000000 08:03
2586 /lib/libgcc_s.so.1
7f90cf2a1000-7f90cf4a1000 ---p 00016000 08:03
2586 /lib/libgcc_s.so.1
7f90cf4a1000-7f90cf4a2000 r--p 00016000 08:03
2586 /lib/libgcc_s.so.1
7f90cf4a2000-7f90cf4a3000 rw-p 00017000 08:03
2586 /lib/libgcc_s.so.1
7f90cf4a3000-7f90cf594000 r-xp 00000000 08:03
9977 /usr/lib/libstdc++.soAborted
*** glibc detected *** g.region: double free or corruption (fasttop):
0x000000000074f970 ***
======= Backtrace: =========
/lib/libc.so.6[0x7f5eb256ecb8]
/lib/libc.so.6(cfree+0x76)[0x7f5eb2571276]
/usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f5eb06d450d]
/lib/libc.so.6(__cxa_finalize+0xb0)[0x7f5eb252dab0]
/usr/lib/libgeos-3.0.0.so[0x7f5eb01481e6]
======= Memory map: ========
00400000-0040a000 r-xp 00000000 08:03
26667 /usr/local/grass-6.4.0svn/bin/g.region
00609000-0060a000 r--p 00009000 08:03
26667 /usr/local/grass-6.4.0svn/bin/g.region
0060a000-0060b000 rw-p 0000a000 08:03
26667 /usr/local/grass-6.4.0svn/bin/g.region
0074e000-0076f000 rw-p 0074e000 00:00 0
[heap]
7f5ea8000000-7f5ea8021000 rw-p 7f5ea8000000 00:00 0
7f5ea8021000-7f5eac000000 ---p 7f5ea8021000 00:00 0
7f5eada27000-7f5eada2a000 r-xp 00000000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f5eada2a000-7f5eadc29000 ---p 00003000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f5eadc29000-7f5eadc2a000 rw-p 00002000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f5eadc2a000-7f5eadc8f000 r-xp 00000000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f5eadc8f000-7f5eade8e000 ---p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f5eade8e000-7f5eade8f000 r--p 00064000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f5eade8f000-7f5eade91000 rw-p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f5eade91000-7f5eadea1000 r-xp 00000000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f5eadea1000-7f5eae0a0000 ---p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f5eae0a0000-7f5eae0a1000 r--p 0000f000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f5eae0a1000-7f5eae0a2000 rw-p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f5eae0a2000-7f5eae145000 r-xp 00000000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f5eae145000-7f5eae344000 ---p 000a3000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f5eae344000-7f5eae34e000 r--p 000a2000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f5eae34e000-7f5eae34f000 rw-p 000ac000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f5eae34f000-7f5eae368000 r-xp 00000000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f5eae368000-7f5eae567000 ---p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f5eae567000-7f5eae568000 r--p 00018000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f5eae568000-7f5eae569000 rw-p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f5eae569000-7f5eae577000 r-xp 00000000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f5eae577000-7f5eae776000 ---p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f5eae776000-7f5eae777000 r--p 0000d000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f5eae777000-7f5eae778000 rw-p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f5eae778000-7f5eae78c000 r-xp 00000000 08:03
7742 /lib/libresolv-2.9.so
7f5eae78c000-7f5eae98c000 ---p 00014000 08:03
7742 /lib/libresolv-2.9.so
7f5eae98c000-7f5eae98d000 r--p 00014000 08:03
7742 /lib/libresolv-2.9.so
7f5eae98d000-7f5eae98e000 rw-p 00015000 08:03
7742 /lib/libresolv-2.9.so
7f5eae98e000-7f5eae990000 rw-p 7f5eae98e000 00:00 0
7f5eae990000-7f5eae992000 r-xp 00000000 08:03
2596 /lib/libkeyutils-1.2.so
7f5eae992000-7f5eaeb91000 ---p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7f5eaeb91000-7f5eaeb92000 r--p 00001000 08:03
2596 /lib/libkeyutils-1.2.so
7f5eaeb92000-7f5eaeb93000 rw-p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7f5eaeb9300Aborted
*** glibc detected *** g.proj: double free or corruption (fasttop):
0x0000000001667970 ***
======= Backtrace: =========
/lib/libc.so.6[0x7f22d04accb8]
/lib/libc.so.6(cfree+0x76)[0x7f22d04af276]
/usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f22ce61250d]
/lib/libc.so.6(__cxa_finalize+0xb0)[0x7f22d046bab0]
/usr/lib/libgeos-3.0.0.so[0x7f22ce0861e6]
======= Memory map: ========
00400000-00406000 r-xp 00000000 08:03
26665 /usr/local/grass-6.4.0svn/bin/g.proj
00605000-00606000 r--p 00005000 08:03
26665 /usr/local/grass-6.4.0svn/bin/g.proj
00606000-00607000 rw-p 00006000 08:03
26665 /usr/local/grass-6.4.0svn/bin/g.proj
01666000-01687000 rw-p 01666000 00:00 0
[heap]
7f22c4000000-7f22c4021000 rw-p 7f22c4000000 00:00 0
7f22c4021000-7f22c8000000 ---p 7f22c4021000 00:00 0
7f22cb965000-7f22cb968000 r-xp 00000000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f22cb968000-7f22cbb67000 ---p 00003000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f22cbb67000-7f22cbb68000 rw-p 00002000 08:03
2590 /lib/libgpg-error.so.0.3.0
7f22cbb68000-7f22cbbcd000 r-xp 00000000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f22cbbcd000-7f22cbdcc000 ---p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f22cbdcc000-7f22cbdcd000 r--p 00064000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f22cbdcd000-7f22cbdcf000 rw-p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7f22cbdcf000-7f22cbddf000 r-xp 00000000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f22cbddf000-7f22cbfde000 ---p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f22cbfde000-7f22cbfdf000 r--p 0000f000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f22cbfdf000-7f22cbfe0000 rw-p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7f22cbfe0000-7f22cc083000 r-xp 00000000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f22cc083000-7f22cc282000 ---p 000a3000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f22cc282000-7f22cc28c000 r--p 000a2000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f22cc28c000-7f22cc28d000 rw-p 000ac000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7f22cc28d000-7f22cc2a6000 r-xp 00000000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f22cc2a6000-7f22cc4a5000 ---p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f22cc4a5000-7f22cc4a6000 r--p 00018000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f22cc4a6000-7f22cc4a7000 rw-p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7f22cc4a7000-7f22cc4b5000 r-xp 00000000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f22cc4b5000-7f22cc6b4000 ---p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f22cc6b4000-7f22cc6b5000 r--p 0000d000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f22cc6b5000-7f22cc6b6000 rw-p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7f22cc6b6000-7f22cc6ca000 r-xp 00000000 08:03
7742 /lib/libresolv-2.9.so
7f22cc6ca000-7f22cc8ca000 ---p 00014000 08:03
7742 /lib/libresolv-2.9.so
7f22cc8ca000-7f22cc8cb000 r--p 00014000 08:03
7742 /lib/libresolv-2.9.so
7f22cc8cb000-7f22cc8cc000 rw-p 00015000 08:03
7742 /lib/libresolv-2.9.so
7f22cc8cc000-7f22cc8ce000 rw-p 7f22cc8cc000 00:00 0
7f22cc8ce000-7f22cc8d0000 r-xp 00000000 08:03
2596 /lib/libkeyutils-1.2.so
7f22cc8d0000-7f22ccacf000 ---p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7f22ccacf000-7f22ccad0000 r--p 00001000 08:03
2596 /lib/libkeyutils-1.2.so
7f22ccad0000-7f22ccad1000 rw-p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7f22ccad1000-7f22ccad8000 r-xp 00000000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f22ccad8000-7f22cccd7000 ---p 00007000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f22cccd7000-7f22cccd8000 r--p 00006000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f22cccd8000-7f22cccd9000 rw-p 00007000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7f22cccd9000-7f22cccfc000 r-xp 00000000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f22cccfc000-7f22ccefb000 ---p 00023000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f22ccefb000-7f22ccefd000 r--p 00022000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f22ccefd000-7f22ccefe000 rw-p 00024000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7f22ccefe000-7f22ccf42000 r-xp 00000000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f22ccf42000-7f22cd142000 ---p 00044000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f22cd142000-7f22cd143000 r--p 00044000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f22cd143000-7f22cd145000 rw-p 00045000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7f22cd145000-7f22cd147000 rw-p 7f22cd145000 00:00 0
7f22cd147000-7f22cd150000 r-xp 00000000 08:03
7729 /lib/libcrypt-2.9.so
7f22cd150000-7f22cd34f000 ---p 00009000 08:03
7729 /lib/libcrypt-2.9.so
7f22cd34f000-7f22cd350000 r--p 00008000 08:03
7729 /lib/libcrypt-2.9.so
7f22cd350000-7f22cd351000 rw-p 00009000 08:03
7729 /lib/libcrypt-2.9.so
7f22cd351000-7f22cd37f000 rw-p 7f22cd351000 00:00 0
7f22cd37f000-7f22cd3ab000 r-xp 00000000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f22cd3ab000-7f22cd5aa000 ---p 0002c000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f22cd5aa000-7f22cd5ab000 r--p 0002b000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f22cd5ab000-7f22cd5ac000 rw-p 0002c000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7f22cd5ac000-7f22cd5af000 r-xp 00000000 08:03
2572 /lib/libcom_err.so.2.1
7f22cd5af000-7f22cd7ae000 ---p 00003000 08:03
2572 /lib/libcom_err.so.2.1
7f22cd7ae000-7f22cd7af000 r--p 00002000 08:03
2572 /lib/libcom_err.so.2.1
7f22cd7af000-7f22cd7b0000 rw-p 00003000 08:03
2572 /lib/libcom_err.so.2.1
7f22cd7b0000-7f22cd848000 r-xp 00000000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f22cd848000-7f22cda47000 ---p 00098000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f22cda47000-7f22cda4a000 r--p 00097000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f22cda4a000-7f22cda4b000 rw-p 0009a000 08:03
41760 /usr/lib/libkrb5.so.3.3
7f22cda4b000-7f22cdbae000 r-xp 00000000 08:03
129184 /lib/libcrypto.so.0.9.8
7f22cdbae000-7f22cddad000 ---p 00163000 08:03
129184 /lib/libcrypto.so.0.9.8
7f22cddad000-7f22cddba000 r--p 00162000 08:03
129184 /lib/libcrypto.so.0.9.8
7f22cddba000-7f22cddd0000 rw-p 0016f000 08:03
129184 /lib/libcrypto.so.0.9.8
7f22cddd0000-7f22cddd4000 rw-p 7f22cddd0000 00:00 0
7f22cddd4000-7f22cde1d000 r-xp 00000000 08:03
129185 /lib/libssl.so.0.9.8
7f22cde1d000-7f22ce01d000 ---p 00049000 08:03
129185 /lib/libssl.so.0.9.8
7f22ce01d000-7f22ce01e000 r--p 00049000 08:03
129185 /lib/libssl.so.0.9.8
7f22ce01e000-7f22ce023000 rw-p 0004a000 08:03
129185 /lib/libssl.so.0.9.8
7f22ce023000-7f22ce14e000 r-xp 00000000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7f22ce14e000-7f22ce34d000 ---p 0012b000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7f22ce34d000-7f22ce354000 rw-p 0012a000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7f22ce354000-7f22ce36a000 r-xp 00000000 08:03
2586 /lib/libgcc_s.so.1
7f22ce36a000-7f22ce56a000 ---p 00016000 08:03
2586 /lib/libgcc_s.so.1
7f22ce56a000-7f22ce56b000 r--p 00016000 08:03
2586 /lib/libgcc_s.so.1
7f22ce56b000-7f22ce56c000 rw-p 00017000 08:03
2586 /lib/libgcc_s.so.1
7f22ce56c000-7f22ce65d000 r-xp 00000000 08:03
9977 /usr/lib/libstdc++.so.6.0.1Aborted
*** glibc detected *** g.proj: double free or corruption (fasttop):
0x0000000001836970 ***
======= Backtrace: =========
/lib/libc.so.6[0x7fadc86f7cb8]
/lib/libc.so.6(cfree+0x76)[0x7fadc86fa276]
/usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7fadc685d50d]
/lib/libc.so.6(__cxa_finalize+0xb0)[0x7fadc86b6ab0]
/usr/lib/libgeos-3.0.0.so[0x7fadc62d11e6]
======= Memory map: ========
00400000-00406000 r-xp 00000000 08:03
26665 /usr/local/grass-6.4.0svn/bin/g.proj
00605000-00606000 r--p 00005000 08:03
26665 /usr/local/grass-6.4.0svn/bin/g.proj
00606000-00607000 rw-p 00006000 08:03
26665 /usr/local/grass-6.4.0svn/bin/g.proj
01835000-01856000 rw-p 01835000 00:00 0
[heap]
7fadbc000000-7fadbc021000 rw-p 7fadbc000000 00:00 0
7fadbc021000-7fadc0000000 ---p 7fadbc021000 00:00 0
7fadc3bb0000-7fadc3bb3000 r-xp 00000000 08:03
2590 /lib/libgpg-error.so.0.3.0
7fadc3bb3000-7fadc3db2000 ---p 00003000 08:03
2590 /lib/libgpg-error.so.0.3.0
7fadc3db2000-7fadc3db3000 rw-p 00002000 08:03
2590 /lib/libgpg-error.so.0.3.0
7fadc3db3000-7fadc3e18000 r-xp 00000000 08:03
2588 /lib/libgcrypt.so.11.4.4
7fadc3e18000-7fadc4017000 ---p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7fadc4017000-7fadc4018000 r--p 00064000 08:03
2588 /lib/libgcrypt.so.11.4.4
7fadc4018000-7fadc401a000 rw-p 00065000 08:03
2588 /lib/libgcrypt.so.11.4.4
7fadc401a000-7fadc402a000 r-xp 00000000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7fadc402a000-7fadc4229000 ---p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7fadc4229000-7fadc422a000 r--p 0000f000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7fadc422a000-7fadc422b000 rw-p 00010000 08:03
9983 /usr/lib/libtasn1.so.3.0.16
7fadc422b000-7fadc42ce000 r-xp 00000000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7fadc42ce000-7fadc44cd000 ---p 000a3000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7fadc44cd000-7fadc44d7000 r--p 000a2000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7fadc44d7000-7fadc44d8000 rw-p 000ac000 08:03
9498 /usr/lib/libgnutls.so.26.4.6
7fadc44d8000-7fadc44f1000 r-xp 00000000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7fadc44f1000-7fadc46f0000 ---p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7fadc46f0000-7fadc46f1000 r--p 00018000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7fadc46f1000-7fadc46f2000 rw-p 00019000 08:03
130996 /usr/lib/libsasl2.so.2.0.22
7fadc46f2000-7fadc4700000 r-xp 00000000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7fadc4700000-7fadc48ff000 ---p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7fadc48ff000-7fadc4900000 r--p 0000d000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7fadc4900000-7fadc4901000 rw-p 0000e000 08:03
9697 /usr/lib/liblber-2.4.so.2.4.1
7fadc4901000-7fadc4915000 r-xp 00000000 08:03
7742 /lib/libresolv-2.9.so
7fadc4915000-7fadc4b15000 ---p 00014000 08:03
7742 /lib/libresolv-2.9.so
7fadc4b15000-7fadc4b16000 r--p 00014000 08:03
7742 /lib/libresolv-2.9.so
7fadc4b16000-7fadc4b17000 rw-p 00015000 08:03
7742 /lib/libresolv-2.9.so
7fadc4b17000-7fadc4b19000 rw-p 7fadc4b17000 00:00 0
7fadc4b19000-7fadc4b1b000 r-xp 00000000 08:03
2596 /lib/libkeyutils-1.2.so
7fadc4b1b000-7fadc4d1a000 ---p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7fadc4d1a000-7fadc4d1b000 r--p 00001000 08:03
2596 /lib/libkeyutils-1.2.so
7fadc4d1b000-7fadc4d1c000 rw-p 00002000 08:03
2596 /lib/libkeyutils-1.2.so
7fadc4d1c000-7fadc4d23000 r-xp 00000000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7fadc4d23000-7fadc4f22000 ---p 00007000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7fadc4f22000-7fadc4f23000 r--p 00006000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7fadc4f23000-7fadc4f24000 rw-p 00007000 08:03
41761 /usr/lib/libkrb5support.so.0.1
7fadc4f24000-7fadc4f47000 r-xp 00000000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7fadc4f47000-7fadc5146000 ---p 00023000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7fadc5146000-7fadc5148000 r--p 00022000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7fadc5148000-7fadc5149000 rw-p 00024000 08:03
41758 /usr/lib/libk5crypto.so.3.1
7fadc5149000-7fadc518d000 r-xp 00000000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7fadc518d000-7fadc538d000 ---p 00044000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7fadc538d000-7fadc538e000 r--p 00044000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7fadc538e000-7fadc5390000 rw-p 00045000 08:03
9702 /usr/lib/libldap_r-2.4.so.2.4.1
7fadc5390000-7fadc5392000 rw-p 7fadc5390000 00:00 0
7fadc5392000-7fadc539b000 r-xp 00000000 08:03
7729 /lib/libcrypt-2.9.so
7fadc539b000-7fadc559a000 ---p 00009000 08:03
7729 /lib/libcrypt-2.9.so
7fadc559a000-7fadc559b000 r--p 00008000 08:03
7729 /lib/libcrypt-2.9.so
7fadc559b000-7fadc559c000 rw-p 00009000 08:03
7729 /lib/libcrypt-2.9.so
7fadc559c000-7fadc55ca000 rw-p 7fadc559c000 00:00 0
7fadc55ca000-7fadc55f6000 r-xp 00000000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7fadc55f6000-7fadc57f5000 ---p 0002c000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7fadc57f5000-7fadc57f6000 r--p 0002b000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7fadc57f6000-7fadc57f7000 rw-p 0002c000 08:03
41757 /usr/lib/libgssapi_krb5.so.2.2
7fadc57f7000-7fadc57fa000 r-xp 00000000 08:03
2572 /lib/libcom_err.so.2.1
7fadc57fa000-7fadc59f9000 ---p 00003000 08:03
2572 /lib/libcom_err.so.2.1
7fadc59f9000-7fadc59fa000 r--p 00002000 08:03
2572 /lib/libcom_err.so.2.1
7fadc59fa000-7fadc59fb000 rw-p 00003000 08:03
2572 /lib/libcom_err.so.2.1
7fadc59fb000-7fadc5a93000 r-xp 00000000 08:03
41760 /usr/lib/libkrb5.so.3.3
7fadc5a93000-7fadc5c92000 ---p 00098000 08:03
41760 /usr/lib/libkrb5.so.3.3
7fadc5c92000-7fadc5c95000 r--p 00097000 08:03
41760 /usr/lib/libkrb5.so.3.3
7fadc5c95000-7fadc5c96000 rw-p 0009a000 08:03
41760 /usr/lib/libkrb5.so.3.3
7fadc5c96000-7fadc5df9000 r-xp 00000000 08:03
129184 /lib/libcrypto.so.0.9.8
7fadc5df9000-7fadc5ff8000 ---p 00163000 08:03
129184 /lib/libcrypto.so.0.9.8
7fadc5ff8000-7fadc6005000 r--p 00162000 08:03
129184 /lib/libcrypto.so.0.9.8
7fadc6005000-7fadc601b000 rw-p 0016f000 08:03
129184 /lib/libcrypto.so.0.9.8
7fadc601b000-7fadc601f000 rw-p 7fadc601b000 00:00 0
7fadc601f000-7fadc6068000 r-xp 00000000 08:03
129185 /lib/libssl.so.0.9.8
7fadc6068000-7fadc6268000 ---p 00049000 08:03
129185 /lib/libssl.so.0.9.8
7fadc6268000-7fadc6269000 r--p 00049000 08:03
129185 /lib/libssl.so.0.9.8
7fadc6269000-7fadc626e000 rw-p 0004a000 08:03
129185 /lib/libssl.so.0.9.8
7fadc626e000-7fadc6399000 r-xp 00000000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7fadc6399000-7fadc6598000 ---p 0012b000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7fadc6598000-7fadc659f000 rw-p 0012a000 08:03
369746 /usr/lib/libgeos-3.0.0.so
7fadc659f000-7fadc65b5000 r-xp 00000000 08:03
2586 /lib/libgcc_s.so.1
7fadc65b5000-7fadc67b5000 ---p 00016000 08:03
2586 /lib/libgcc_s.so.1
7fadc67b5000-7fadc67b6000 r--p 00016000 08:03
2586 /lib/libgcc_s.so.1
7fadc67b6000-7fadc67b7000 rw-p 00017000 08:03
2586 /lib/libgcc_s.so.1
7fadc67b7000-7fadc68a8000 r-xp 00000000 08:03
9977 /usr/lib/libstdc++.so.6.0.1Aborted
# exiting R
q()
Save workspace image? [y/n/c]: n
*** glibc detected *** /usr/lib64/R/bin/exec/R: double free or
corruption (fasttop): 0x000000000175a8c0 ***
======= Backtrace: =========
/lib/libc.so.6[0x7f71bc5e3cb8]
/lib/libc.so.6(cfree+0x76)[0x7f71bc5e6276]
/usr/lib/libstdc++.so.6(_ZNSsD1Ev+0x3d)[0x7f71b844e50d]
/lib/libc.so.6(exit+0x9d)[0x7f71bc5a26ed]
/usr/lib64/R/lib/libR.so[0x7f71bcabbae8]
/usr/lib64/R/lib/libR.so[0x7f71bc9e837e]
/usr/lib64/R/lib/libR.so[0x7f71bc9fce99]
/usr/lib64/R/lib/libR.so(Rf_eval+0x444)[0x7f71bc9bdf24]
/usr/lib64/R/lib/libR.so(Rf_applyClosure+0x2bb)[0x7f71bc9c1aab]
/usr/lib64/R/lib/libR.so(Rf_eval+0x393)[0x7f71bc9bde73]
/usr/lib64/R/lib/libR.so(Rf_ReplIteration+0x1eb)[0x7f71bc9e9c9b]
/usr/lib64/R/lib/libR.so[0x7f71bc9e9f08]
/usr/lib64/R/lib/libR.so(run_Rmainloop+0x50)[0x7f71bc9e9fa0]
/usr/lib64/R/bin/exec/R(main+0x1b)[0x40098b]
/lib/libc.so.6(__libc_start_main+0xe6)[0x7f71bc58a5a6]
/usr/lib64/R/bin/exec/R[0x400879]
======= Memory map: ========
00400000-00401000 r-xp 00000000 08:03
145343 /usr/lib/R/bin/exec/R
00600000-00601000 r--p 00000000 08:03
145343 /usr/lib/R/bin/exec/R
00601000-00602000 rw-p 00001000 08:03
145343 /usr/lib/R/bin/exec/R
0143d000-037c8000 rw-p 0143d000 00:00 0
[heap]
7f71ac000000-7f71ac021000 rw-p 7f71ac000000 00:00 0
7f71ac021000-7f71b0000000 ---p 7f71ac021000 00:00 0
7f71b1865000-7f71b19b8000 r-xp 00000000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f71b19b8000-7f71b1bb7000 ---p 00153000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f71b1bb7000-7f71b1bbf000 r--p 00152000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f71b1bbf000-7f71b1bc1000 rw-p 0015a000 08:03
20890 /usr/lib/libxml2.so.2.6.32
7f71b1bc1000-7f71b1bc2000 rw-p 7f71b1bc1000 00:00 0
7f71b1bc2000-7f71b1bdd000 r-xp 00000000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f71b1bdd000-7f71b1ddd000 ---p 0001b000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f71b1ddd000-7f71b1dde000 r--p 0001b000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f71b1dde000-7f71b1ddf000 rw-p 0001c000 08:03
160572 /usr/local/lib/R/site-library/XML/libs/XML.so
7f71b1ddf000-7f71b1dea000 r-xp 00000000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f71b1dea000-7f71b1fea000 ---p 0000b000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f71b1fea000-7f71b1feb000 r--p 0000b000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f71b1feb000-7f71b1fec000 rw-p 0000c000 08:03
161788 /usr/local/lib/gdalplugins/ogr_GRASS.so
7f71b1fec000-7f71b20a2000 r-xp 00000000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f71b20a2000-7f71b22a1000 ---p 000b6000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f71b22a1000-7f71b22a7000 r--p 000b5000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f71b22a7000-7f71b22a8000 rw-p 000bb000 08:03
103912 /usr/lib/libfftw3.so.3.1.2
7f71b22a8000-7f71b22a9000 r-xp 00000000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f71b22a9000-7f71b24a9000 ---p 00001000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f71b24a9000-7f71b24aa000 r--p 00001000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f71b24aa000-7f71b24ab000 rw-p 00002000 08:03
269548 /usr/local/grass-6.4.0svn/lib/libgrass_linkm.6.4.0svn.so
7f71b24ab000-7f71b24b1000 r-xp 00000000 08:03
269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so
7f71b24b1000-7f71b26b0000 ---p 00006000 08:03
269592 /usr/local/grass-6.4.0svn/lib/libgrass_rtree.6.4.0svn.so
7f71b26b0000-7f71b26b1000 r--p 00005000 08:03
269592 /usrAborted
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