[GRASS-user] Using r.buffer on image with geographic coordinates
Ned Horning
horning at amnh.org
Mon Mar 28 17:40:29 EDT 2011
Hi Markus M.
Thanks for the pointer but I'm still having a problem (terminal output
pasted below) and wonder if I'm still accessing v.buffer2. The program
stops because I run out of memory. I have 5.7 GB of physical and 5.8 GB
for my swap and it's not enough. I ran make and make install in the
v.buffer directory and ran configure, make and make install in
/usr/local/src/grass6_devel. I expect I'm doing something stupid but am
at a loss as to how to fix it.
Any thoughts?
Ned
--
WARNING: Next edge was visited but it is not the first one !!! breaking
loop
WARNING: Next edge was visited but it is not the first one !!! breaking
loop
WARNING: Next edge was visited but it is not the first one !!! breaking
loop
100%
Writting buffers...
100%
Building topology for vector map <testBuf>...
Registering primitives...
1435962 primitives registered
115977416 vertices registered
Number of nodes: 1435838
Number of primitives: 1435962
Number of points: 0
Number of lines: 0
Number of boundaries: 1435962
Number of centroids: 0
Number of areas: -
Number of isles: -
Snapping boundaries...
Killed
On 03/28/2011 07:44 AM, Markus Metz wrote:
> On Mon, Mar 28, 2011 at 12:39 PM, Ned Horning<horning at amnh.org> wrote:
>> Markus,
>>
>> Thanks for fixing the code. I managed to compile v.buffer and I ran it in
>> the grass65 terminal window and these are the errors I got. There were
>> several of the "Next edge was visited...." messages but I only cut out the
>> last couple. Any idea what the problem might be? I'm running on 64 bit
>> Ubuntu.
>>
>> All the best,
>>
>> Ned
>> --
>> WARNING: Next edge was visited but it is not the first one !!! breaking
>> loop
>> WARNING: Next edge was visited but it is not the first one !!! breaking
>> loop
>> WARNING: Next edge was visited but it is not the first one !!! breaking
>> loop
>> WARNING: Next edge was visited but it is not the first one !!! breaking
>> loop
> It seems that this is still v.buffer2, not v.buffer (a bit confusing
> because the stuff in vector/v.buffer2 is compiled as v.buffer, as is
> the stuff in vector/v.buffer). You need to either start grass from the
> source tree or run make install again in order to make use of the
> vector/v.buffer module.
>
> HTH,
>
> Markus M
>
>
>> *** glibc detected *** d.vect: free(): invalid next size (normal):
>> 0x00000000013a5fc0 ***
>> ======= Backtrace: =========
>> /lib/libc.so.6(+0x775b6)[0x7fc0f26965b6]
>> /lib/libc.so.6(cfree+0x73)[0x7fc0f269ce83]
>> /usr/local/grass-6.5.svn/lib/libgrass_vect.6.5.svn.so(Vect_destroy_line_struct+0x28)[0x7fc0f424f638]
>> d.vect(plot1+0xb0a)[0x40876a]
>> d.vect(main+0x1314)[0x4072d4]
>> /lib/libc.so.6(__libc_start_main+0xfd)[0x7fc0f263dc4d]
>> d.vect[0x403cd9]
>> ======= Memory map: ========
>> 00400000-0040c000 r-xp 00000000 08:05 206110
>> /usr/local/grass-6.5.svn/bin/d.vect
>> 0060b000-0060c000 r--p 0000b000 08:05 206110
>> /usr/local/grass-6.5.svn/bin/d.vect
>> 0060c000-0060d000 rw-p 0000c000 08:05 206110
>> /usr/local/grass-6.5.svn/bin/d.vect
>> 01398000-013b9000 rw-p 00000000 00:00 0
>> [heap]
>> 7fc0e4000000-7fc0e4021000 rw-p 00000000 00:00 0
>> 7fc0e4021000-7fc0e8000000 ---p 00000000 00:00 0
>> 7fc0e97cd000-7fc0e97d9000 r-xp 00000000 08:05 531120
>> /lib/libnss_files-2.11.1.so
>> 7fc0e97d9000-7fc0e99d8000 ---p 0000c000 08:05 531120
>> /lib/libnss_files-2.11.1.so
>> 7fc0e99d8000-7fc0e99d9000 r--p 0000b000 08:05 531120
>> /lib/libnss_files-2.11.1.so
>> 7fc0e99d9000-7fc0e99da000 rw-p 0000c000 08:05 531120
>> /lib/libnss_files-2.11.1.so
>> 7fc0e99da000-7fc0e99e4000 r-xp 00000000 08:05 531542
>> /lib/libnss_nis-2.11.1.so
>> 7fc0e99e4000-7fc0e9be3000 ---p 0000a000 08:05 531542
>> /lib/libnss_nis-2.11.1.so
>> 7fc0e9be3000-7fc0e9be4000 r--p 00009000 08:05 531542
>> /lib/libnss_nis-2.11.1.so
>> 7fc0e9be4000-7fc0e9be5000 rw-p 0000a000 08:05 531542
>> /lib/libnss_nis-2.11.1.so
>> 7fc0e9be5000-7fc0e9bed000 r-xp 00000000 08:05 527981
>> /lib/libnss_compat-2.11.1.so
>> 7fc0e9bed000-7fc0e9dec000 ---p 00008000 08:05 527981
>> /lib/libnss_compat-2.11.1.so
>> 7fc0e9dec000-7fc0e9ded000 r--p 00007000 08:05 527981
>> /lib/libnss_compat-2.11.1.so
>> 7fc0e9ded000-7fc0e9dee000 rw-p 00008000 08:05 527981
>> /lib/libnss_compat-2.11.1.so
>> 7fc0e9dee000-7fc0e9df1000 r-xp 00000000 08:05 523508
>> /lib/libgpg-error.so.0.4.0
>> 7fc0e9df1000-7fc0e9ff0000 ---p 00003000 08:05 523508
>> /lib/libgpg-error.so.0.4.0
>> 7fc0e9ff0000-7fc0e9ff1000 r--p 00002000 08:05 523508
>> /lib/libgpg-error.so.0.4.0
>> 7fc0e9ff1000-7fc0e9ff2000 rw-p 00003000 08:05 523508
>> /lib/libgpg-error.so.0.4.0
>> 7fc0e9ff2000-7fc0ea002000 r-xp 00000000 08:05 134688
>> /usr/lib/libtasn1.so.3.1.7
>> 7fc0ea002000-7fc0ea201000 ---p 00010000 08:05 134688
>> /usr/lib/libtasn1.so.3.1.7
>> 7fc0ea201000-7fc0ea202000 r--p 0000f000 08:05 134688
>> /usr/lib/libtasn1.so.3.1.7
>> 7fc0ea202000-7fc0ea203000 rw-p 00010000 08:05 134688
>> /usr/lib/libtasn1.so.3.1.7
>> 7fc0ea203000-7fc0ea21c000 r-xp 00000000 08:05 134634
>> /usr/lib/libsasl2.so.2.0.23
>> 7fc0ea21c000-7fc0ea41b000 ---p 00019000 08:05 134634
>> /usr/lib/libsasl2.so.2.0.23
>> 7fc0ea41b000-7fc0ea41c000 r--p 00018000 08:05 134634
>> /usr/lib/libsasl2.so.2.0.23
>> 7fc0ea41c000-7fc0ea41d000 rw-p 00019000 08:05 134634
>> /usr/lib/libsasl2.so.2.0.23
>> 7fc0ea41d000-7fc0ea433000 r-xp 00000000 08:05 531562
>> /lib/libresolv-2.11.1.so
>> 7fc0ea433000-7fc0ea632000 ---p 00016000 08:05 531562
>> /lib/libresolv-2.11.1.so
>> 7fc0ea632000-7fc0ea633000 r--p 00015000 08:05 531562
>> /lib/libresolv-2.11.1.so
>> 7fc0ea633000-7fc0ea634000 rw-p 00016000 08:05 531562
>> /lib/libresolv-2.11.1.so
>> 7fc0ea634000-7fc0ea636000 rw-p 00000000 00:00 0
>> 7fc0ea636000-7fc0ea638000 r-xp 00000000 08:05 523515
>> /lib/libkeyutils-1.2.so
>> 7fc0ea638000-7fc0ea837000 ---p 00002000 08:05 523515
>> /lib/libkeyutils-1.2.so
>> 7fc0ea837000-7fc0ea838000 r--p 00001000 08:05 523515
>> /lib/libkeyutils-1.2.so
>> 7fc0ea838000-7fc0ea839000 rw-p 00002000 08:05 523515
>> /lib/libkeyutils-1.2.so
>> 7fc0ea839000-7fc0ea840000 r-xp 00000000 08:05 134268
>> /usr/lib/libkrb5support.so.0.1
>> 7fc0ea840000-7fc0eaa3f000 ---p 00007000 08:05 134268
>> /usr/lib/libkrb5support.so.0.1
>> 7fc0eaa3f000-7fc0eaa40000 r--p 00006000 08:05 134268
>> /usr/lib/libkrb5support.so.0.1
>> 7fc0eaa40000-7fc0eaa41000 rw-p 00007000 08:05 134268
>> /usr/lib/libkrb5support.so.0.1
>> 7fc0eaa41000-7fc0eaa65000 r-xp 00000000 08:05 132675
>> /usr/lib/libk5crypto.so.3.1
>> 7fc0eaa65000-7fc0eac65000 ---p 00024000 08:05 132675
>> /usr/lib/libk5crypto.so.3.1
>> 7fc0eac65000-7fc0eac66000 r--p 00024000 08:05 132675
>> /usr/lib/libk5crypto.so.3.1
>> 7fc0eac66000-7fc0eac67000 rw-p 00025000 08:05 132675
>> /usr/lib/libk5crypto.so.3.1
>> 7fc0eac67000-7fc0eac7e000 r-xp 00000000 08:05 527976
>> /lib/libnsl-2.11.1.so
>> 7fc0eac7e000-7fc0eae7d000 ---p 00017000 08:05 527976
>> /lib/libnsl-2.11.1.so
>> 7fc0eae7d000-7fc0eae7e000 r--p 00016000 08:05 527976
>> /lib/libnsl-2.11.1.so
>> 7fc0eae7e000-7fc0eae7f000 rw-p 00017000 08:05 527976
>> /lib/libnsl-2.11.1.so
>> 7fc0eae7f000-7fc0eae81000 rw-p 00000000 00:00 0
>> 7fc0eae81000-7fc0eaef6000 r-xp 00000000 08:05 523504
>> /lib/libgcrypt.so.11.5.2
>> 7fc0eaef6000-7fc0eb0f5000 ---p 00075000 08:05 523504
>> /lib/libgcrypt.so.11.5.2
>> 7fc0eb0f5000-7fc0eb0f6000 r--p 00074000 08:05 523504
>> /lib/libgcrypt.so.11.5.2
>> 7fc0eb0f6000-7fc0eb0f9000 rw-p 00075000 08:05 523504
>> /lib/libgcrypt.so.11.5.2
>> 7fc0eb0f9000-7fc0eb195000 r-xp 00000000 08:05 134182
>> /usr/lib/libgnutls.so.26.14.12
>> 7fc0eb195000-7fc0eb394000 ---p 0009c000 08:05 134182
>> /usr/lib/libgnutls.so.26.14.12
>> 7fc0eb394000-7fc0eb39a000 r--p 0009b000 08:05 134182
>> /usr/lib/libgnutls.so.26.14.12
>> 7fc0eb39a000-7fc0eb39b000 rw-p 000a1000 08:05 134182
>> /usr/lib/libgnutls.so.26.14.12
>> 7fc0eb39b000-7fc0eb3a8000 r-xp 00000000 08:05 132150
>> /usr/lib/liblber-2.4.so.2.5.4 100%
>> Writting buffers...
>> 100%
>> Building topology for vector map<testBuf2>...
>> Registering primitives...
>> 1435962 primitives registered
>> 115977416 vertices registered
>> Number of nodes: 1435838
>> Number of primitives: 1435962
>> Number of points: 0
>> Number of lines: 0
>> Number of boundaries: 1435962
>> Number of centroids: 0
>> Number of areas: -
>> Number of isles: -
>> Snapping boundaries...
>> Killed
>> GRASS 6.5.svn (NHD_Test):~>
>>
>>
>> On 03/27/2011 02:51 PM, Markus Neteler wrote:
>>> On Sun, Mar 27, 2011 at 3:57 PM, Ned Horning<horning at amnh.org> wrote:
>>>> Hi Markus,
>>>>
>>>> Thanks for your help. I am trying to follow your instruction but ran into
>>>> a
>>>> problem compiling v.buffer. I used svn to download grass 6.5 into
>>>> /usr/local/src and it appears to have compiled just fine and grass65
>>>> seems
>>>> to be working. To compile v.buffer I tried:
>>>> sudo make MODULE_TOPDIR=/usr/local/grass-6.5.svn/
>>>>
>>>> from the /usr/local/src/grass6_devel/vector/v.buffer directory but that
>>>> didn't work. I pasted the error message below.
>>> I have fixed to typo style bugs. Now it compiles, please try again.
>>>
>>> Markus
>>>
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