[GRASS-user] Geomorphons and extension manager

Robert Andrew Brown brown782 at purdue.edu
Wed Feb 27 06:49:52 PST 2013 

Hello,

I appreciate the fast action on the dealing with the geomorphon issue. However I again tried to use extension manager to install the add-on and got the following warning. 

#####################
(Wed Feb 27 09:20:40 2013)                                                      
g.extension extension=r.geomorphon operation=add                                
Fetching <r.geomorphon> from GRASS-Addons SVN (be patient)...
Compiling...
In file included from geom.c:1:
local_proto.h:1:20: error: stdlib.h: No such file or
directory
local_proto.h:2:20: error: string.h: No such file or
directory
local_proto.h:3:18: error: math.h: No such file or directory
local_proto.h:4:27: error: grass/glocale.h: No such file or
directory
local_proto.h:5:23: error: grass/gis.h: No such file or
directory
local_proto.h:6:26: error: grass/raster.h: No such file or
directory
In file included from geom.c:1:
local_proto.h:57: error: expected specifier-qualifier-list
before 'RASTER_MAP_TYPE'
local_proto.h:68: error: expected specifier-qualifier-list
before 'RASTER_MAP_TYPE'
local_proto.h:77: error: expected specifier-qualifier-list
before 'CELL'
local_proto.h:146: error: expected declaration specifiers or
'...' before 'RASTER_MAP_TYPE'
local_proto.h:147: error: expected ')' before '*' token
geom.c: In function 'exposition':
geom.c:149: warning: incompatible implicit declaration of
built-in function 'fabs'
geom.c: In function 'extends':
geom.c:213: warning: incompatible implicit declaration of
built-in function 'fabs'
geom.c: In function 'shape':
geom.c:240: warning: incompatible implicit declaration of
built-in function 'atan'
geom.c:244: warning: incompatible implicit declaration of
built-in function 'sin'
geom.c:245: warning: incompatible implicit declaration of
built-in function 'cos'
In file included from geom.c:1:
local_proto.h:1:20: error: stdlib.h: No such file or
directory
local_proto.h:2:20: error: string.h: No such file or
directory
local_proto.h:3:18: error: math.h: No such file or directory
local_proto.h:4:27: error: grass/glocale.h: No such file or
directory
local_proto.h:5:23: error: grass/gis.h: No such file or
directory
local_proto.h:6:26: error: grass/raster.h: No such file or
directory
In file included from geom.c:1:
local_proto.h:57: error: expected specifier-qualifier-list
before 'RASTER_MAP_TYPE'
local_proto.h:68: error: expected specifier-qualifier-list
before 'RASTER_MAP_TYPE'
local_proto.h:77: error: expected specifier-qualifier-list
before 'CELL'
local_proto.h:146: error: expected declaration specifiers or
'...' before 'RASTER_MAP_TYPE'
local_proto.h:147: error: expected ')' before '*' token
geom.c: In function 'exposition':
geom.c:149: warning: incompatible implicit declaration of
built-in function 'fabs'
geom.c: In function 'extends':
geom.c:213: warning: incompatible implicit declaration of
built-in function 'fabs'
geom.c: In function 'shape':
geom.c:240: warning: incompatible implicit declaration of
built-in function 'atan'
geom.c:244: warning: incompatible implicit declaration of
built-in function 'sin'
geom.c:245: warning: incompatible implicit declaration of
built-in function 'cos'
lipo: can't figure out the architecture type of: /var/folder
s/wc/2dv9njw93k3bfyy5ppkw022h0000gn/T//ccJFVReJ.out
make: *** [OBJ.x86_64-apple-darwin12.2.0/geom.o] Error 1
ERROR: Compilation failed, sorry. Please check above error messages.
(Wed Feb 27 09:20:45 2013) Command finished (5 sec)                             
##############################


Any help would be much appreciated!


Sincerely,

-robert brown


On Feb 27, 2013, at 12:48 AM, Hamish <hamish_b at yahoo.com> wrote:

> 
> Hi,
> 
> missing function definitions added in svn with r55235 & now it builds. I'll leave the other compiler warnings for the authors to look at ...
> 
> 
> Hamish
> 
> 
> --- On Tue, 2/26/13, Moskovitz, Bob at DOC <Bob.Moskovitz at conservation.ca.gov> wrote:
> 
> From: Moskovitz, Bob at DOC <Bob.Moskovitz at conservation.ca.gov>
> Subject: Re: [GRASS-user] Geomorphons and extension manager
> To: "Robert Andrew Brown" <brown782 at purdue.edu>, "grass-user at lists.osgeo.org" <grass-user at lists.osgeo.org>
> Cc: "Phillip Owens" <prowens at purdue.edu>, "jarekj at amu.edu.pl" <jarekj at amu.edu.pl>
> Date: Tuesday, February 26, 2013, 3:38 PM
> 
> When I tried to compile r.geomorphon, I got the errors you see below.  I just tried g.extensions with similar results.
> 
>  
> $ make MODULE_TOPDIR=/home/bob/dev/gis/grass70
> test -d OBJ.x86_64-unknown-linux-gnu || mkdir -p OBJ.x86_64-unknown-linux-gnu
> gcc  -g -Wall -Werror-implicit-function-declaration -fno-common -Wextra -Wunused   -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include  -D_FILE_OFFSET_BITS=64  -DPACKAGE=\""grassmods"\"   -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include -o OBJ.x86_64-unknown-linux-gnu/geom.o -c geom.c
> geom.c: In function ‘ternary_rotate’:
> geom.c:21:5: warning: unused variable ‘res’ [-Wunused-variable]
> geom.c: In function ‘radial2cartesian’:
> geom.c:188:21: warning: ordered comparison of pointer with integer zero [-Wextra]
> geom.c: In function ‘extends’:
> geom.c:198:37: warning: unused parameter ‘pattern_size’ [-Wunused-parameter]
> geom.c: At top level:
> geom.c:2:15: warning: ‘dirs’ defined but not used [-Wunused-variable]
> gcc  -g -Wall -Werror-implicit-function-declaration -fno-common -Wextra -Wunused   -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include  -D_FILE_OFFSET_BITS=64  -DPACKAGE=\""grassmods"\"   -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include -I/home/bob/dev/gis/grass70/dist.x86_64-unknown-linux-gnu/include -o OBJ.x86_64-unknown-linux-gnu/main.o -c main.c
> main.c: In function ‘main’:
> main.c:177:2: warning: format not a string literal and no format arguments [-Wformat-security]
> main.c:198:2: warning: format not a string literal and no format arguments [-Wformat-security]
> main.c:207:2: warning: format not a string literal and no format arguments [-Wformat-security]
> main.c:213:2: warning: format not a string literal and no format arguments [-Wformat-security]
> main.c:220:3: warning: format not a string literal and no format arguments [-Wformat-security]
> main.c:234:3: warning: format not a string literal and no format arguments [-Wformat-security]
> main.c:310:8: warning: format not a string literal and no format arguments [-Wformat-security]
> main.c:366:5: error: implicit declaration of function ‘radial2cartesian’ [-Werror=implicit-function-declaration]
> main.c:401:2: error: implicit declaration of function ‘write_contrast_colors’ [-Werror=implicit-function-declaration]
> main.c:268:20: warning: unused variable ‘formC’ [-Wunused-variable]
> main.c:268:13: warning: unused variable ‘formB’ [-Wunused-variable]
> main.c:268:6: warning: unused variable ‘formA’ [-Wunused-variable]
> main.c:76:22: warning: unused variable ‘radius’ [-Wunused-variable]
> main.c:74:11: warning: unused variable ‘n’ [-Wunused-variable]
> main.c:74:8: warning: unused variable ‘j’ [-Wunused-variable]
> main.c:463:1: warning: control reaches end of non-void function [-Wreturn-type]
> cc1: some warnings being treated as errors
> make: *** [OBJ.x86_64-unknown-linux-gnu/main.o] Error 1
>  
>  
>  
> From: grass-user-bounces at lists.osgeo.org [mailto:grass-user-bounces at lists.osgeo.org] On Behalf Of Robert Andrew Brown
> Sent: Tuesday, February 26, 2013 9:21 AM
> To: grass-user at lists.osgeo.org
> Cc: Phillip Owens
> Subject: [GRASS-user] Geomorphons and extension manager
> 
>  
> To whom it may concern,
> 
>  
> I am trying to use extension manager in grass to install geomrphons. However, I am having trouble with the extension manager(error below). I emailed the geomorphon developer Jarek Jasiewicz(See Below) and he suggest I contact the GRASS-Users forum.
> 
>  
> Please advise,
> 
>  
> -Robert Brown
> 
> 
> 
> 
> From: JASIEWICZ Jarosław <jarekj at amu.edu.pl>
> 
> Subject: Re: Geomorphons
> 
> Date: February 26, 2013 11:56:20 AM EST
> 
> To: brown782 at purdue.edu
> 
>  
> On 02/26/2013 05:21 PM, brown782 at purdue.edu wrote:
> 
> Dear Sir,
> 
> I use grass on my Mac OS X 10.8.2. I have been trying to compile grass to install the add-on Geomorphons. However, it is overwhelming to compile grass from source code as I have very little experience compiling programs. When I saw that your Geomorphons algorithm was part of the grass 7.0 add-ons I was pleased and tried to use the extension manager to add it to my grass add-on repository, however, I get an several errors which I have posted below. Any Suggestions?
> #####################
> 
> g.extension extension=r.geomorphon/ operation=add
> Fetching <r.geomorphon/> from GRASS-Addons SVN (be patient)...
> Compiling...
> In file included from geom.c:1:
> local_proto.h:1:20: error: stdlib.h: No such file or
> directory
> local_proto.h:2:20: error: string.h: No such file or
> directory
> local_proto.h:3:18: error: math.h: No such file or directory
> local_proto.h:4:27: error: grass/glocale.h: No such file or
> directory
> local_proto.h:5:23: error: grass/gis.h: No such file or
> directory
> local_proto.h:6:26: error: grass/raster.h: No such file or
> directory
> In file included from geom.c:1:
> local_proto.h:56: error: expected specifier-qualifier-list
> before 'RASTER_MAP_TYPE'
> local_proto.h:66: error: expected specifier-qualifier-list
> before 'RASTER_MAP_TYPE'
> local_proto.h:74: error: expected specifier-qualifier-list
> before 'CELL'
> local_proto.h:139: error: expected declaration specifiers or
> '...' before 'RASTER_MAP_TYPE'
> local_proto.h:140: error: expected ')' before '*' token
> geom.c: In function 'exposition':
> geom.c:146: warning: incompatible implicit declaration of
> built-in function 'fabs'
> geom.c: In function 'extends':
> geom.c:206: warning: incompatible implicit declaration of
> built-in function 'fabs'
> geom.c: In function 'shape':
> geom.c:232: warning: incompatible implicit declaration of
> built-in function 'atan'
> geom.c:236: warning: incompatible implicit declaration of
> built-in function 'sin'
> geom.c:237: warning: incompatible implicit declaration of
> built-in function 'cos'
> In file included from geom.c:1:
> local_proto.h:1:20: error: stdlib.h: No such file or
> directory
> local_proto.h:2:20: error: string.h: No such file or
> directory
> local_proto.h:3:18: error: math.h: No such file or directory
> local_proto.h:4:27: error: grass/glocale.h: No such file or
> directory
> local_proto.h:5:23: error: grass/gis.h: No such file or
> directory
> local_proto.h:6:26: error: grass/raster.h: No such file or
> directory
> In file included from geom.c:1:
> local_proto.h:56: error: expected specifier-qualifier-list
> before 'RASTER_MAP_TYPE'
> local_proto.h:66: error: expected specifier-qualifier-list
> before 'RASTER_MAP_TYPE'
> local_proto.h:74: error: expected specifier-qualifier-list
> before 'CELL'
> local_proto.h:139: error: expected declaration specifiers or
> '...' before 'RASTER_MAP_TYPE'
> local_proto.h:140: error: expected ')' before '*' token
> geom.c: In function 'exposition':
> geom.c:146: warning: incompatible implicit declaration of
> built-in function 'fabs'
> geom.c: In function 'extends':
> geom.c:206: warning: incompatible implicit declaration of
> built-in function 'fabs'
> geom.c: In function 'shape':
> geom.c:232: warning: incompatible implicit declaration of
> built-in function 'atan'
> geom.c:236: warning: incompatible implicit declaration of
> built-in function 'sin'
> geom.c:237: warning: incompatible implicit declaration of
> built-in function 'cos'
> lipo: can't figure out the architecture type of: /var/folder
> s/wc/2dv9njw93k3bfyy5ppkw022h0000gn/T//ccESKY4a.out
> make: *** [OBJ.x86_64-apple-darwin12.2.0/geom.o] Error 1
> ERROR: Compilation failed, sorry. Please check above error messages.
> (Tue Feb 26 09:40:18 2013) Command finished (3 sec)
> #############################
> 
> Your help is much appreciated!
> 
> Sincerely,
> 
> Robert Brown
> 
> 
> 
> All messages comes from compiler informing you haven't installed standard librarires. This is however the issue of g.extension, which do not work well with Apple systems. Please contact grass dev team how to resolve this issue
> 
> regards
> Jarek
> 
>  
> 
> -----Inline Attachment Follows-----
> 
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