[GRASS-user] Compilation issues on Scientific Linux 6.6

[Matthias Benedikt]

Hi there!
I'm trying to compile GRASS GIS and ist components (proj, libtiff, geotiff, geos, gdal, netcdf, hdf5, laszip) from source on Scientific Linux. I've done that routine like a 100 times on Ubuntu with root access where it worked fine. The current machine has a lot of restrictions, that might be one of the issues.
 
This is my config:


CFLAGS="-g" ./configure \
 --prefix=/path/to/releasebranch_7_0/build \
 --enable-64bit \
 --enable-debug \
 --enable-largefile \
 --with-freetype --with-freetype-includes=/usr/include/freetype2 \
 --with-gdal=/path/to/gdal-2.0.1/build/bin/gdal-config \
 --with-geos=/path/to/geos-3.4.2/build/bin/geos-config \
 --with-netcdf=/path/to/netcdf-4.3.3.1/build/bin/nc-config \
 --with-openmp \
 --with-proj-includes=/path/to/proj-4.9.1/build/include \
 --with-proj-libs=/path/to/proj-4.9.1/build/lib \
 --with-proj-share=/path/to/proj-4.9.1/build/share \
 --with-python \
 --with-readline \
 --with-sqlite \
 --with-tiff-includes=/path/to/tiff-4.0.6/build/include \
 --with-tiff-libs=/path/to/tiff-4.0.6/build/lib \
 --without-fftw \
 --without-blas \
 --without-ffmpeg \
 --without-lapack \
 --without-mysql \
 --without-odbc \
 --without-opengl \
 --without-postgres 

 
This is the errormessage after make -j16:


GRASS GIS 7.0.2svn r66747 compilation log
--------------------------------------------------
Started compilation: Thu Nov  5 12:02:49 CET 2015
--
Errors in:
/path/to/releasebranch_7_0/raster/r.gwflow
/path/to/releasebranch_7_0/raster/r.param.scale
/path/to/releasebranch_7_0/raster/r.proj
/path/to/releasebranch_7_0/raster/r.series.accumulate
/path/to/releasebranch_7_0/raster/r.resamp.bspline
/path/to/releasebranch_7_0/raster/r.resamp.rst
/path/to/releasebranch_7_0/raster/r.solute.transport
/path/to/releasebranch_7_0/raster/r.surf.gauss
/path/to/releasebranch_7_0/raster/r.sim/r.sim.water
/path/to/releasebranch_7_0/raster/r.surf.random
/path/to/releasebranch_7_0/raster/r.sim/r.sim.sediment
/path/to/releasebranch_7_0/raster3d/r3.gwflow
/path/to/releasebranch_7_0/vector/v.extract
/path/to/releasebranch_7_0/vector/v.kernel
/path/to/releasebranch_7_0/vector/v.lidar.correction
/path/to/releasebranch_7_0/vector/v.lidar.edgedetection
/path/to/releasebranch_7_0/vector/v.lidar.growing
/path/to/releasebranch_7_0/vector/v.outlier
/path/to/releasebranch_7_0/vector/v.rectify
/path/to/releasebranch_7_0/vector/v.surf.rst
/path/to/releasebranch_7_0/vector/v.surf.bspline
/path/to/releasebranch_7_0/imagery/i.cca
/path/to/releasebranch_7_0/imagery/i.gensigset
/path/to/releasebranch_7_0/imagery/i.ortho.photo/i.ortho.camera
/path/to/releasebranch_7_0/imagery/i.ortho.photo/i.ortho.elev
/path/to/releasebranch_7_0/imagery/i.pca
/path/to/releasebranch_7_0/imagery/i.smap
/path/to/releasebranch_7_0/imagery/i.ortho.photo/i.ortho.rectify
--
In case of errors please change into the directory with error and run 'make'.
If you get multiple errors, you need to deal with them in the order they
appear in the error log. If you get an error building a library, you will
also get errors from anything which uses the library.
--
Finished compilation: Thu Nov  5 12:04:15 CET 2015
make: *** [default] Error 1
It already had some more errors, but those I could solve with various export PATH and LD_LIBRARY commands.
 
When I enter one of the dirs and try to do make, this happens:


[user at l33 r.gwflow]$ make
: && icc -L/path/to/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/lib -L/path/to/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/lib -Wl,--export-dynamic -Wl,-rpath-link,/path/to/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/lib -o /path/to/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/bin/r.gwflow OBJ.x86_64-unknown-linux-gnu/main.o    -lgrass_gpde.7.0.2svn -lgrass_raster.7.0.2svn -lgrass_gis.7.0.2svn -lgrass_gmath.7.0.2svn
/path/to/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/lib/libgrass_gmath.7.0.2svn.so: undefined reference to `__kmpc_reduce_nowait'
/path/to/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/lib/libgrass_gmath.7.0.2svn.so: undefined reference to `__kmpc_end_reduce_nowait'
/path/to/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/lib/libgrass_gpde.7.0.2svn.so: undefined reference to `__kmpc_end_serialized_parallel'
...
/home/lv70836/avaflow/src/releasebranch_7_0/dist.x86_64-unknown-linux-gnu/lib/libgrass_gpde.7.0.2svn.so: undefined reference to `__kmpc_for_static_init_4'
Any pointers would be  much appreciated!
 
Regards, Matthias
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