[GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
Adam Dershowitz
adershowitz at exponent.com
Mon Jun 13 08:10:50 PDT 2016
That is with the newest version? (I downloaded from the web site an hour ago)
That is really strange. Michael, does the installer change any paths? Agustin, did you already having anything in /usr/local/lib/wxPython-3.0.2.0?
Perhaps, in a non-SIP, machine, the installer puts stuff in /usr/local, and the installer then adjusts the paths accordingly, while it can’t on a SIP machine, so it installs into the package bundle itself?
-- Adam
On 6/13/16, 10:38 AM, "Agustin Diez Castillo" <agustin.diez at uv.es> wrote:
>I have no clue, but this is not the same in my machine, there nothing is pointing to Michael’s machine.
>otool -L /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so
>/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so:
> /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.4.0)
> /usr/local/lib/wxPython-3.0.2.0/lib/libwx_osx_cocoau-3.0.0.2.0.dylib (compatibility version 3.0.0, current version 3.0.0)
> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit (compatibility version 1.0.0, current version 275.0.0)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon (compatibility version 2.0.0, current version 136.0.0)
> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa (compatibility version 1.0.0, current version 12.0.0)
> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox (compatibility version 1.0.0, current version 1.0.0)
> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 111.1.4)
> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL (compatibility version 1.0.0, current version 1.0.0)
> /usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)
> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 476.18.0)
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices (compatibility version 1.0.0, current version 34.0.0)
>
>El 13Jun, 2016, a las 4:25 PM, Adam Dershowitz <adershowitz at exponent.com> escribió:
>
>> Strange. Because you local path is explicitly in the binary. Here is what shows for the libraries for _core_.so on my machine. I don’t see why disabling SIP should change this:
>>
>> $otool -L /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so
>> /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so:
>> /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 56.0.0)
>> /Users/cmbarton/grass_source/wxp3/usr/local/lib/libwx_osx_cocoau-3.0.0.2.0.dylib (compatibility version 3.0.0, current version 3.0.0)
>> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit (compatibility version 1.0.0, current version 275.0.0)
>> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon (compatibility version 2.0.0, current version 155.0.0)
>> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa (compatibility version 1.0.0, current version 19.0.0)
>> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox (compatibility version 1.0.0, current version 1.0.0)
>> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 169.3.0)
>> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL (compatibility version 1.0.0, current version 1.0.0)
>> /usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1669.0.0)
>> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 744.19.0)
>> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices (compatibility version 1.0.0, current version 45.0.0)
>>
>>
>>
>>
>> Perhaps without SIP, it falls back to searching another way, instead of just using this path? While with SIP, it only uses the explicit path?
>> The libraries are present in the application bundle, so the problem is just “telling” it where to look for them.
>>
>> -- Adam
>>
>>
>>
>>
>>
>>
>>
>>
>> On 6/13/16, 10:15 AM, "Michael Barton" <Michael.Barton at asu.edu> wrote:
>>
>>> Except that this error only occurs with SIP enabled. Disable SIP and the error goes away and everything runs fine.
>>>
>>> Michael Barton
>>> School of Human Evolution &Social Change
>>> Center for Social Dynamics & Complexity
>>> Arizona State University
>>>
>>> ...Sent from my iPad
>>>
>>>> On Jun 13, 2016, at 6:18 AM, Adam Dershowitz <adershowitz at exponent.com> wrote:
>>>>
>>>> I was traveling last week, so just got to this.
>>>>
>>>> No luck. And, it doesn’t look like a SIP issue. Instead, the path is now hard coded to something on your machine. Here is the error I get when it try to open the application:
>>>>
>>>> $ '/Applications/GRASS-7.3.app/Contents/MacOS/grass.sh'; exit
>>>> Rebuilding Addon HTML manual pages index...
>>>> Rebuilding Addon menu...
>>>> Python 2.7.10 found.
>>>> Cleaning up temporary files...
>>>> Starting GRASS GIS...
>>>> Traceback (most recent call last):
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/gis_set.py", line 31, in <module>
>>>> from core import globalvar
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/globalvar.py", line 96, in <module>
>>>> import wx
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/__init__.py", line 45, in <module>
>>>> from wx._core import *
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core.py", line 4, in <module>
>>>> import _core_
>>>> ImportError: dlopen(/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so, 2): Library not loaded: /Users/cmbarton/grass_source/wxp3/usr/local/lib/libwx_osx_cocoau-3.0.0.2.0.dylib
>>>> Referenced from: /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so
>>>> Reason: image not found
>>>> ERROR: Error in GUI startup. See messages above (if any) and if necessary, please report this error to the GRASS developers.
>>>> On systems with package manager, make sure you have the right GUI package, probably named grass-gui, installed.
>>>> To run GRASS GIS in text mode use the -text flag.
>>>> Exiting...
>>>> logout
>>>> Saving session...
>>>> ...copying shared history...
>>>> ...saving history...truncating history files...
>>>> ...completed.
>>>>
>>>>
>>>> [Process completed]
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> -- Adam
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>> On 6/9/16, 8:37 PM, "Michael Barton" <Michael.Barton at asu.edu> wrote:
>>>>>
>>>>> I've replaced the build from earlier today with one that is sort of wxPython 3.0.3.0
>>>>>
>>>>>
>>>>>
>>>>> There was no straightforward way to build this. The only thing on github is the wxpython part. For a full source package it needs to be combined with wxWidgets and both compiled together. The 3.0.2.0 source package has the wxpython folder inside the wxwidgets source folder. Seems easy enough. So I downloaded the latest wxpython and the latest wxwidgets, dropped the wxpython folder inside the wxwidgets folder and compiled. After solving some compiling issues, it all built.
>>>>>
>>>>>
>>>>>
>>>>> Then I tried to build GRASS against the result. No problem with the build. But when I went to run it, it had a version mismatch error between wxpython and wxwidgets that disabled 3D.
>>>>>
>>>>>
>>>>>
>>>>> So I tried again by replacing the wxpython directory in the 3.0.2.0 source with the new wxpython folder from github. Again, this compiled without problems, and GRASS compiled against it without errors.
>>>>>
>>>>>
>>>>>
>>>>> When I run GRASS, it again complains of a version mismatch but it doesn't seem to have any effects. So I've posted this one on the website for now. It does fix the plot.py bug but I can't see any other difference. Maybe you can.
>>>>>
>>>>>
>>>>>
>>>>> I'll be very interested to hear if this runs under SIP.
>>>>>
>>>>>
>>>>>
>>>>> Cheers
>>>>>
>>>>> Michael
>>>>>
>>>>> ____________________
>>>>>
>>>>> C. Michael Barton
>>>>>
>>>>> Director, Center for Social Dynamics & Complexity
>>>>>
>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>
>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>
>>>>> Arizona State University
>>>>>
>>>>>
>>>>>
>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>
>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>>
>>>>> www: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= , https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e=
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>>>>>>> On Jun 9, 2016, at 1:56 PM, Michael Barton <Michael.Barton at asu.edu> wrote:
>>>>>>
>>>>>
>>>>>> That's great news. Now to see if it also works under SIP.
>>>>>
>>>>>
>>>>>> I wanted to test this to see if it even worked before I tried wxPython 3.0.3 and Glynn's hack for gettext. If it works under El Capitan SIP, then on to the next steps.
>>>>>
>>>>>
>>>>>> Michael
>>>>>
>>>>>> ____________________
>>>>>
>>>>>> C. Michael Barton
>>>>>
>>>>>> Director, Center for Social Dynamics & Complexity
>>>>>
>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>
>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>
>>>>>> Arizona State University
>>>>>
>>>>>
>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>
>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>>
>>>>>> www: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= , https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e=
>>>>>
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>>>>>
>>>>>>> On Jun 9, 2016, at 1:50 PM, Anna Petrášová <kratochanna at gmail.com> wrote:
>>>>>
>>>>>
>>>>>>> On Thu, Jun 9, 2016 at 4:30 PM, Michael Barton <Michael.Barton at asu.edu> wrote:
>>>>>
>>>>>>>> yet another GRASS 7.3 64 bit.
>>>>>
>>>>>
>>>>>>>> In this version (just uploaded a few minutes ago to the website), I've built
>>>>>
>>>>>>>> wxPython from source and installed it in a non-system folder. I built GRASS
>>>>>
>>>>>>>> against this local build of wxPython. There should be no problems for SIP if
>>>>>
>>>>>>>> it is only the bundled dependencies. And this should not require any
>>>>>
>>>>>>>> additional packages like Anaconda.
>>>>>
>>>>>
>>>>>>> I tested it on old Yosemite (before SIP came) and works great, but I
>>>>>
>>>>>>> was wondering, since you decided to compile wxpython, could you use
>>>>>
>>>>>>> wxpython 3.0.3? It's not released, but a lot of bugs are supposed to
>>>>>
>>>>>>> be solved there.
>>>>>
>>>>>
>>>>>>> Thanks
>>>>>
>>>>>
>>>>>>> Anna
>>>>>
>>>>>
>>>>>>>> Let me know
>>>>>
>>>>>>>> Michael
>>>>>
>>>>>>>> ____________________
>>>>>
>>>>>>>> C. Michael Barton
>>>>>
>>>>>>>> Director, Center for Social Dynamics & Complexity
>>>>>
>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>
>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>
>>>>>>>> Arizona State University
>>>>>
>>>>>
>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>
>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>>
>>>>>>>> www: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= , https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e=
>>>>>
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>>>>>>>> On Jun 6, 2016, at 12:37 PM, Michael Barton <Michael.Barton at asu.edu> wrote:
>>>>>
>>>>>
>>>>>>>> OK. This means the /usr/local/... path is hardwired into the wxPython Mac
>>>>>
>>>>>>>> binary itself. Not sure if this changes how we need to deal with this.
>>>>>
>>>>>
>>>>>>>> Michael
>>>>>
>>>>>
>>>>>
>>>>>>>> ____________________
>>>>>
>>>>>>>> C. Michael Barton
>>>>>
>>>>>>>> Director, Center for Social Dynamics & Complexity
>>>>>
>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>
>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>
>>>>>>>> Arizona State University
>>>>>
>>>>>
>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>
>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>>
>>>>>>>> www: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= , https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e=
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>>>>>
>>>>>>>> On Jun 6, 2016, at 12:15 PM, Adam Dershowitz <adershowitz at exponent.com>
>>>>>
>>>>>>>> wrote:
>>>>>
>>>>>
>>>>>>>> I just downloaded it, and tried it. No luck. It still doesn’t find the
>>>>>
>>>>>>>> libraries that it needs:
>>>>>
>>>>>
>>>>>>>> '/Applications/GRASS-7.3.app/Contents/MacOS/grass.sh'; exit
>>>>>
>>>>>>>> Rebuilding Addon HTML manual pages index...
>>>>>
>>>>>>>> Rebuilding Addon menu...
>>>>>
>>>>>>>> Python 2.7.10 found.
>>>>>
>>>>>>>> Cleaning up temporary files...
>>>>>
>>>>>>>> Starting GRASS GIS...
>>>>>
>>>>>>>> Traceback (most recent call last):
>>>>>
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/gis_set.py",
>>>>>
>>>>>>>> line 31, in <module>
>>>>>
>>>>>>>> from core import globalvar
>>>>>
>>>>>>>> File
>>>>>
>>>>>>>> "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/globalvar.py",
>>>>>
>>>>>>>> line 96, in <module>
>>>>>
>>>>>>>> import wx
>>>>>
>>>>>>>> File
>>>>>
>>>>>>>> "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/__init__.py", line
>>>>>
>>>>>>>> 45, in <module>
>>>>>
>>>>>>>> from wx._core import *
>>>>>
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core.py",
>>>>>
>>>>>>>> line 4, in <module>
>>>>>
>>>>>>>> import _core_
>>>>>
>>>>>>>> ImportError:
>>>>>
>>>>>>>> dlopen(/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so,
>>>>>
>>>>>>>> 2): Library not loaded:
>>>>>
>>>>>>>> /usr/local/lib/wxPython-3.0.2.0/lib/libwx_osx_cocoau-3.0.0.2.0.dylib
>>>>>
>>>>>>>> Referenced from:
>>>>>
>>>>>>>> /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so
>>>>>
>>>>>>>> Reason: image not found
>>>>>
>>>>>>>> ERROR: Error in GUI startup. See messages above (if any) and if necessary,
>>>>>
>>>>>>>> please report this error to the GRASS developers.
>>>>>
>>>>>>>> On systems with package manager, make sure you have the right GUI package,
>>>>>
>>>>>>>> probably named grass-gui, installed.
>>>>>
>>>>>>>> To run GRASS GIS in text mode use the -text flag.
>>>>>
>>>>>>>> Exiting...
>>>>>
>>>>>>>> logout
>>>>>
>>>>>>>> Saving session...
>>>>>
>>>>>>>> ...copying shared history...
>>>>>
>>>>>>>> ...saving history...truncating history files...
>>>>>
>>>>>>>> ...completed.
>>>>>
>>>>>>>> Deleting expired sessions...none found.
>>>>>
>>>>>
>>>>>>>> [Process completed]
>>>>>
>>>>>
>>>>>
>>>>>>>> -- Adam
>>>>>
>>>>>
>>>>>
>>>>>>>> From: Michael Barton <Michael.Barton at asu.edu>
>>>>>
>>>>>>>> Date: Monday, June 6, 2016 at 2:50 PM
>>>>>
>>>>>>>> To: Adam Dershowitz <adershowitz at exponent.com>
>>>>>
>>>>>>>> Cc: GRASS developers <grass-dev at lists.osgeo.org>, GRASS users
>>>>>
>>>>>>>> <grass-user at lists.osgeo.org>, Helena Mitasova <hmitaso at unity.ncsu.edu>, Anna
>>>>>
>>>>>>>> Petrášová <kratochanna at gmail.com>
>>>>>
>>>>>>>> Subject: Re: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP
>>>>>
>>>>>>>> problem - please test
>>>>>
>>>>>
>>>>>>>> Adam and others,
>>>>>
>>>>>
>>>>>>>> Yet another GRASS 64 bit. I just uploaded to the GRASS for Mac site.
>>>>>
>>>>>
>>>>>>>> I tried something else. I am hoping that this works with SIP enabled in El
>>>>>
>>>>>>>> Capitan and does not add Anaconda as a required dependency.
>>>>>
>>>>>
>>>>>>>> If you have a chance, give it a try.
>>>>>
>>>>>
>>>>>>>> Michael
>>>>>
>>>>>>>> ____________________
>>>>>
>>>>>>>> C. Michael Barton
>>>>>
>>>>>>>> Director, Center for Social Dynamics & Complexity
>>>>>
>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>
>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>
>>>>>>>> Arizona State University
>>>>>
>>>>>
>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>
>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>>
>>>>>>>> www: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=t-evT5rQyQQdd5Yl-DU1zeDo8ybQZ4me2JzEEZ1ddA4&e= , https://urldefense.proofpoint.com/v2/url?u=http-3A__csdc.asu.edu&d=CwIGaQ&c=t0wRGL5ICVzH157W8C8Wew&r=5usL3OGqXabRLtSzGmh8YEvbco28TaiOmWcn6rCn8wM&m=ZHG1SBIrTbYkWcpw0RMifv4qtTknor0PcekUo29_faA&s=xdYPqcLWa0qS3KHYIxFxDSyf5TRG7ewwV8xNHfIrBfI&e=
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>
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