[postgis-users] GDAL problems (Kyngesbury GDAL)
Dheeraj Chand
dheeraj at dheerajchand.com
Sat Dec 28 16:27:12 PST 2013
William,
Thanks for responding. I was using the 1.10 because I updated when you updated. I got the same kind of error when I used 1.9, though. I'd be more than happy to try again and show you, though. Do you think that it's necessary?
Best,
-dx
On Dec 28, 2013, at 11:46 AM, William Kyngesburye <woklist at kyngchaos.com> wrote:
> Sorry, I didn't read to the very end, where you did recompile with the --include-dirs option.
>
> The missing lib/ warning is no problem, just a warning.
>
> The segfault though, doesn't say enough to figure out what's wrong. Maybe there is something in the Console.app, like a crash report (User Diaognostic Reports section).
>
> On Dec 28, 2013, at 11:38 AM, William Kyngesburye wrote:
>
>> The compile flag to set the GDAL include dir is wrong for the framework. It seems to be assuming that the framework is a 'nix lib/include structure, but really the include dir is named "Headers". Odd that it uses supposedly gdal-config, but doesn't get the -cflags from it that have the correct include dir.
>>
>> I see that Tim's instructions actually call for using --include-dirs=/Library/Frameworks/GDAL.framework/Versions/1.9/Headers/
>>
>>
>> I wonder: Tim, what is it about the "virtual environment" that makes the existing GDAL python in the framework not work? (I don't know anything about python virtual env)
>>
>>
>> On Dec 27, 2013, at 10:33 PM, Dheeraj Chand wrote:
>>
>>> Hi, all,
>>>
>>> I was working on a project, that at a high level, can be described as :
>>>
>>> 1. Connect Python to PostGIS,
>>> 2. Grab spatial tables' data,
>>> 3. *PROCESS*,
>>> 4. Spit out shapefiles.
>>>
>>> In the process of doing this, I was trying to use the Python GDAL library in a new virtualenv called geo, but I got these errors. I am using William Kyngesbury's GDAL 1.10 for OS X, and I'm running into crazy errors. I am following the instructions from here (http://linfiniti.com/2013/02/installing-python-gdal-into-a-python-virtualenv-in-osx/), and this is what happened in my shell.
>>>
>>> Can anyone help me out?
>>>
>>> Best,
>>>
>>> -dx
>>>
>>>
>>> -----------------------------------
>>> REINHEIT:~ dheerajchand$ cd ~/Python_Environments/geo/
>>> REINHEIT:geo dheerajchand$ cd build/
>>> REINHEIT:build dheerajchand$ ls
>>> total 8
>>> drwxr-xr-x 4 dheerajchand staff 136B Dec 27 18:10 ./
>>> drwxr-xr-x 7 dheerajchand staff 238B Dec 27 18:10 ../
>>> drwxr-xr-x 22 dheerajchand staff 748B Dec 27 18:10 GDAL/
>>> -rw-r--r-- 1 dheerajchand staff 185B Dec 27 18:10 pip-delete-this-directory.txt
>>> /Users/dheerajchand/Python_Environments/geo/build
>>> REINHEIT:build dheerajchand$ source ~/Python_Environments/geo/bin/activate
>>> (geo)REINHEIT:build dheerajchand$ pip install --no-install GDAL
>>> Downloading/unpacking GDAL
>>> Running setup.py egg_info for package GDAL
>>>
>>> Successfully downloaded GDAL
>>> (geo)REINHEIT:build dheerajchand$ pip freeze
>>> numpy==1.8.0
>>> psycopg2==2.5.1
>>> wsgiref==0.1.2
>>> (geo)REINHEIT:build dheerajchand$ sudo find / -name gdal-config
>>> Password:
>>> find: /dev/fd/3: Not a directory
>>> find: /dev/fd/4: Not a directory
>>> /Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config
>>> /Library/Frameworks/GDAL.framework/Versions/1.10/unix/bin/gdal-config
>>> /Library/Frameworks/GDAL.framework/Versions/1.7/Programs/gdal-config
>>> /Library/Frameworks/GDAL.framework/Versions/1.8/Programs/gdal-config
>>> /Library/Frameworks/GDAL.framework/Versions/1.9/Programs/gdal-config
>>> /Library/Frameworks/GDAL.framework/Versions/1.9/unix/bin/gdal-config
>>> /opt/opengeo/pgsql/9.1/bin/gdal-config
>>> (geo)REINHEIT:build dheerajchand$ cd GDAL/
>>> (geo)REINHEIT:GDAL dheerajchand$ python setup.py build_ext \
>>>> --gdal-config=/Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config \
>>>> --library-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/
>>> running build_ext
>>> gcc-4.2 not found, using clang instead
>>> building 'osgeo._gdal' extension
>>> creating build
>>> creating build/temp.macosx-10.6-intel-2.7
>>> creating build/temp.macosx-10.6-intel-2.7/extensions
>>> clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I../../port -I../../gcore -I../../alg -I../../ogr/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/gdal_wrap.o
>>> extensions/gdal_wrap.cpp:2853:10: fatal error: 'cpl_port.h' file not found
>>> #include "cpl_port.h"
>>> ^
>>> 1 error generated.
>>> error: command 'clang' failed with exit status 1
>>> (geo)REINHEIT:GDAL dheerajchand$ python setup.py build_ext --gdal-config=/Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config --library-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ --include-dirs=/Library/Frameworks/GDAL.framework/Versions/1.
>>> 1.10/ 1.7/ 1.8/ 1.9/
>>> (geo)REINHEIT:GDAL dheerajchand$ python setup.py build_ext --gdal-config=/Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config --library-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ --include-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/
>>> running build_ext
>>> gcc-4.2 not found, using clang instead
>>> building 'osgeo._gdal' extension
>>> clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/gdal_wrap.o
>>> extensions/gdal_wrap.cpp:7501:31: warning: conversion from string literal to
>>> 'char *' is deprecated [-Wdeprecated-writable-strings]
>>> PyObject *item_list = PyMapping_Items( obj1 );
>>> ^
>>> /Library/Frameworks/Python.framework/Versions/2.7/include/python2.7/abstract.h:1354:50: note:
>>> expanded from macro 'PyMapping_Items'
>>> #define PyMapping_Items(O) PyObject_CallMethod(O,"items",NULL)
>>> ^
>>> 1 warning generated.
>>> extensions/gdal_wrap.cpp:7501:31: warning: conversion from string literal to
>>> 'char *' is deprecated [-Wdeprecated-writable-strings]
>>> PyObject *item_list = PyMapping_Items( obj1 );
>>> ^
>>> /Library/Frameworks/Python.framework/Versions/2.7/include/python2.7/abstract.h:1354:50: note:
>>> expanded from macro 'PyMapping_Items'
>>> #define PyMapping_Items(O) PyObject_CallMethod(O,"items",NULL)
>>> ^
>>> 1 warning generated.
>>> creating build/lib.macosx-10.6-intel-2.7
>>> creating build/lib.macosx-10.6-intel-2.7/osgeo
>>> c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/gdal_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_gdal.so
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> building 'osgeo._gdalconst' extension
>>> clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdalconst_wrap.c -o build/temp.macosx-10.6-intel-2.7/extensions/gdalconst_wrap.o
>>> clang -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/gdalconst_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_gdalconst.so
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> building 'osgeo._osr' extension
>>> clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/osr_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/osr_wrap.o
>>> c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/osr_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_osr.so
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> building 'osgeo._ogr' extension
>>> clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/ogr_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/ogr_wrap.o
>>> c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/ogr_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_ogr.so
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> building 'osgeo._gdal_array' extension
>>> clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdal_array_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/gdal_array_wrap.o
>>> In file included from extensions/gdal_array_wrap.cpp:2899:
>>> In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
>>> In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
>>> In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760:
>>> /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning:
>>> "Using deprecated NumPy API, disable it by " "#defining
>>> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
>>> #warning "Using deprecated NumPy API, disable it by " \
>>> ^
>>> 1 warning generated.
>>> In file included from extensions/gdal_array_wrap.cpp:2899:
>>> In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
>>> In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
>>> In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760:
>>> /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning:
>>> "Using deprecated NumPy API, disable it by " "#defining
>>> NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
>>> #warning "Using deprecated NumPy API, disable it by " \
>>> ^
>>> 1 warning generated.
>>> c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/gdal_array_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_gdal_array.so
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
>>> (geo)REINHEIT:GDAL dheerajchand$ pip install --no-download GDAL
>>> Installing collected packages: GDAL
>>> Running setup.py install for GDAL
>>> gcc-4.2 not found, using clang instead
>>>
>>> Successfully installed GDAL
>>> Cleaning up...
>>> (geo)REINHEIT:GDAL dheerajchand$ python
>>> Python 2.7.3 (v2.7.3:70274d53c1dd, Apr 9 2012, 20:52:43)
>>> [GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
>>> Type "help", "copyright", "credits" or "license" for more information.
>>>>>> from osgeo import gdal
>>>>>> gdal.__version__
>>> Segmentation fault: 11
>>> (geo)REINHEIT:GDAL dheerajchand$
>>> _______________________________________________
>>> postgis-users mailing list
>>> postgis-users at lists.osgeo.org
>>> http://lists.osgeo.org/cgi-bin/mailman/listinfo/postgis-users
>>
>> -----
>> William Kyngesburye <kyngchaos*at*kyngchaos*dot*com>
>> http://www.kyngchaos.com/
>>
>> "History is an illusion caused by the passage of time, and time is an illusion caused by the passage of history."
>>
>> - Hitchhiker's Guide to the Galaxy
>>
>>
>> _______________________________________________
>> postgis-users mailing list
>> postgis-users at lists.osgeo.org
>> http://lists.osgeo.org/cgi-bin/mailman/listinfo/postgis-users
>
> -----
> William Kyngesburye <kyngchaos*at*kyngchaos*dot*com>
> http://www.kyngchaos.com/
>
> "Time is an illusion - lunchtime doubly so."
>
> - Ford Prefect
>
>
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