GDAL dependencies during PostGIS upgrade
Nikhil Shetty
nikhil.dba04 at gmail.com
Tue Feb 20 09:07:09 PST 2024
Hi Regina,
I upgraded the existing PostGIS 3.1.2 to 3.3.5 on PG13 but now when I am
trying to install PostGIS 3.3.5 for PG15 , I am getting below error
Error: Transaction test error:
file /usr/lib/.build-id/b6/89201f4430759c8544cd168dc6ba3e24f7d912 from
install of postgis33_15-client-3.3.5-1PGDG.rhel8.x86_64 conflicts with file
from package postgis33_13-client-3.3.5-1PGDG.rhel8.x86_64
Do you know how we can resolve this ?
Complete install o/p
yum install -y postgis33_15*
> Last metadata expiration check: 0:01:21 ago on Tue 20 Feb 2024 05:01:03 PM
> UTC.
> Dependencies resolved.
>
> ==============================================================================================================================================================================================================================
> Package Architecture
> Version
> Repository Size
>
> ==============================================================================================================================================================================================================================
> Installing:
> postgis33_15 x86_64
> 3.3.5-1PGDG.rhel8
> @commandline 4.8 M
> postgis33_15-client x86_64
> 3.3.5-1PGDG.rhel8
> @commandline 289 k
> postgis33_15-devel x86_64
> 3.3.5-1PGDG.rhel8
> @commandline 8.3 k
> postgis33_15-utils x86_64
> 3.3.5-1PGDG.rhel8
> @commandline 44 k
> Transaction Summary
>
> ==============================================================================================================================================================================================================================
> Install 4 Packages
> Total size: 5.1 M
> Installed size: 45 M
> Downloading Packages:
> Running transaction check
> Transaction check succeeded.
> Running transaction test
> Error: Transaction test error:
> file /usr/lib/.build-id/b6/89201f4430759c8544cd168dc6ba3e24f7d912 from
> install of postgis33_15-client-3.3.5-1PGDG.rhel8.x86_64 conflicts with file
> from package postgis33_13-client-3.3.5-1PGDG.rhel8.x86_64
Thanks,
Nikhil
On Fri, Feb 16, 2024 at 11:16 AM Nikhil Shetty <nikhil.dba04 at gmail.com>
wrote:
> Hi Regina,
>
> We are upgrading from PG 13 3.1.2 to PG 15 3.3.5
>
> I forget if pg_upgrade checks the old .so to see if it can still load it
>> or if it only checks if the new .so it is expecting in the new cluster is
>> still available.
>
> pg_upgrade is checking in the PG13 lib whether the .so file exists or not.
>
> If it does check, I’d try upgrading to a newer PostGIS on your older
>> cluster, doesn’t need to be the same, just one where the gdals are
>> compatible.
>
> We might have to go with this approach because it checks the .so file in
> old version
>
>
> Error:
>
> pg_dump: error: query failed: ERROR: could not access file
> "$libdir/postgis-3": No such file or directory
>
> pg_dump: detail: Query was: EXECUTE dumpFunc('23873')
>
>
>
> Missing .so files:
>
>
> -0-root at host:/usr/pgsql-13/lib # ls -l /usr/pgsql-13/lib/postgis*
>
> ls: cannot access '/usr/pgsql-13/lib/postgis*': No such file or directory
>
>
> -2-root at host:/usr/pgsql-13/lib # ls -l /usr/pgsql-15/lib/postgis*
>
> /usr/pgsql-15/lib/postgis-3.so
>
> /usr/pgsql-15/lib/postgis_raster-3.so
>
> /usr/pgsql-15/lib/postgis_sfcgal-3.so
>
> /usr/pgsql-15/lib/postgis_topology-3.so
>
>
> Thanks,
> Nikhil
>
> On Fri, Feb 16, 2024 at 10:53 AM Regina Obe <lr at pcorp.us> wrote:
>
>> Nikhil,
>>
>>
>>
>> Which version of PostgreSQL are you upgrading from.
>>
>>
>>
>> I forget if pg_upgrade checks the old .so to see if it can still load it
>> or if it only checks if the new .so it is expecting in the new cluster is
>> still available.
>>
>>
>>
>> If it doesn’t check the old to try to load the lib, dropping
>> postgis-3.1.2 should work just fine.
>>
>> Since 3.0, the .so file didn’t change, so pg_upgrading from say a PG 13
>> 3.1.2 to a PG 15 3.3.5 should work just fine.
>>
>>
>>
>> If it does check, I’d try upgrading to a newer PostGIS on your older
>> cluster, doesn’t need to be the same, just one where the gdals are
>> compatible.
>>
>>
>>
>> *From:* Nikhil Shetty <nikhil.dba04 at gmail.com>
>> *Sent:* Thursday, February 15, 2024 11:37 PM
>> *To:* PostGIS Users Discussion <postgis-users at lists.osgeo.org>
>> *Subject:* GDAL dependencies during PostGIS upgrade
>>
>>
>>
>> Hi Team,
>>
>>
>>
>> We are planning to upgrade postgres to 15 and postgis from 3.1.2 to 3.3.5.
>>
>>
>>
>> While installing postgis 3.3.5 we found some dependency issues with
>> gdal36, we were able to workaround by removing postgis 3.1.2 and gdal32
>> packages but for postgres upgrade we need both postgis (3.1.2 and 3.3.5)
>> packages to be present.
>>
>>
>>
>> Below is the issue when installing gdal36 which is required for postgis
>> 3.3.5
>>
>>
>>
>> -0-root@<host1>:/tmp # yum install
>> gdal36-libs-3.6.4-6PGDG.rhel8.x86_64.rpm
>> Last metadata expiration check: 0:00:58 ago on Wed 31 Jan 2024 02:01:35
>> PM UTC.
>> Error:
>> Problem: problem with installed package gdal32-libs-3.2.3-1.rhel8.x86_64
>> - package gdal32-libs-3.2.3-1.rhel8.x86_64 requires
>> libarmadillo.so.9()(64bit), but none of the providers can be installed
>> - package gdal32-libs-3.2.2-13.rhel8.x86_64 requires
>> libarmadillo.so.9()(64bit), but none of the providers can be installed
>> - cannot install both armadillo-12.6.6-1.el8.x86_64 and
>> armadillo-9.700.2-1.el8.x86_64
>> - cannot install both armadillo-9.700.2-1.el8.x86_64 and
>> armadillo-12.6.6-1.el8.x86_64
>> - package gdal36-libs-3.6.4-6PGDG.rhel8.x86_64 requires
>> libarmadillo.so.12()(64bit), but none of the providers can be installed
>> - conflicting requests
>> (try to add '—allowerasing' to command line to replace conflicting
>> packages or '—skip-broken' to skip uninstallable packages or '—nobest' to
>> use not only best candidate packages)
>>
>>
>>
>>
>>
>> Thanks,
>>
>> Nikhil
>>
>
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