[Qgis-user] QGIS 3 errors after install on macOS 10.13.4

William Kyngesburye woklist at kyngchaos.com
Thu May 24 06:13:29 PDT 2018 

The homebrew site-packages should not affect the python framework site-packages.  But there may be other parts of virtualenv that the framework sees.  I found one thing I can try with the installer.

> On May 24, 2018, at 5:14 AM, Reg Maltais <reginald.maltais at gmail.com> wrote:
> 
> I just went looking through my homebrew stuff, and I have an older version of python3 in there that I completely forgot about. That’s why pyenv and a bunch of other things got installed. When I go look into /usr/local/lib/python3.6/site-packages/ I see virtualenv.py, osgeo, numpy, etc.
> 
> 
>> On May 23, 2018, at 10:04 PM, William Kyngesburye <woklist at kyngchaos.com <mailto:woklist at kyngchaos.com>> wrote:
>> 
>> Ah, now we're getting somewhere.  Did you install some other python 3 modules?  Maybe pyenv or virtualenv?
>> 
>>> On May 23, 2018, at 5:19 PM, Reg Maltais <reginald.maltais at gmail.com <mailto:reginald.maltais at gmail.com>> wrote:
>>> 
>>> Here’s the truncated output to show just the postinstall lines:
>>> 
>>> May 23 18:14:15 Bellerophon installd[636]: PackageKit: Executing script "./postinstall" in /private/tmp/PKInstallSandbox.AXwBn9/Scripts/org.maptools.proj-framework-yosemite.xOVaFz
>>> May 23 18:14:16 Bellerophon installd[636]: ./postinstall: Could not find an activated virtualenv (required).
>>> May 23 18:14:16 Bellerophon installd[636]: PackageKit: Executing script "./postinstall" in /private/tmp/PKInstallSandbox.AXwBn9/Scripts/org.gdal.gdal22-framework-yosemite.ogoElJ
>>> May 23 18:14:16 Bellerophon installd[636]: ./postinstall: Could not find an activated virtualenv (required).
>>> May 23 18:14:17 Bellerophon installd[636]: ./postinstall: Could not find an activated virtualenv (required).
>>> May 23 18:14:17 Bellerophon installd[636]: PackageKit: Executing script "./postinstall" in /private/tmp/PKInstallSandbox.AXwBn9/Scripts/net.refractions.geos-framework-yosemite.Xrb86e
>>> May 23 18:14:17 Bellerophon installd[636]: ./postinstall: Could not find an activated virtualenv (required).
>>> 
>>> Interestingly, immediately below these are the PackageKit receipt writes:
>>> 
>>> May 23 18:14:17 Bellerophon installd[636]: PackageKit: Writing receipt for org.maptools.proj-framework-yosemite to /
>>> May 23 18:14:17 Bellerophon installd[636]: PackageKit: Writing receipt for org.sqlite.sqlite3-framework-yosemite to /
>>> May 23 18:14:17 Bellerophon installd[636]: PackageKit: Writing receipt for com.kyngchaos.UnixImageIO-framework-F-yosemite to /
>>> May 23 18:14:17 Bellerophon installd[636]: PackageKit: Writing receipt for org.gdal.gdal22-framework-yosemite to /
>>> May 23 18:14:17 Bellerophon installd[636]: PackageKit: Writing receipt for net.refractions.geos-framework-yosemite to /
>>> 
>>> So appears it thinks it worked.
>>> 
>>>> On May 23, 2018, at 5:22 PM, William Kyngesburye <woklist at kyngchaos.com <mailto:woklist at kyngchaos.com>> wrote:
>>>> 
>>>> That was just a test, only one python module.
>>>> 
>>>> So, now it looks like pip is working in the Terminal, but not in my installers.  Try running the GDAL Complete installer again, but don't close it when it finishes.  Instead, open the Installer Log from the Window menu (in the installer).  Then use the popup menu to Show All Logs.  There should be some lines with "postinstall:", what do these say?
>>>> 
>>>>> On May 23, 2018, at 4:59 AM, Reg Maltais <reginald.maltais at gmail.com <mailto:reginald.maltais at gmail.com>> wrote:
>>>>> 
>>>>> So that worked:
>>>>> Processing /Library/Frameworks/GDAL.framework/Versions/2.2/Resources/GDAL-2.2.4-cp36-none-macosx_10_6_intel.whl
>>>>> Installing collected packages: GDAL
>>>>> Successfully installed GDAL-2.2.4
>>>>> 
>>>>> I’m getting different errors when opening QGIS now, I’m assuming due to not having run pip install for all of the various bits.
>>>>> 
>>>>> Couldn't load plugin 'processing' 
>>>>> ModuleNotFoundError: No module named 'psycopg2.extensions'
>>>>> 
>>>>> Traceback (most recent call last):
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 311, in loadPlugin
>>>>>     __import__(packageName)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/__init__.py", line 29, in 
>>>>>     from processing.tools.general import *              # NOQA
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/tools/general.py", line 39, in 
>>>>>     from processing.core.Processing import Processing
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/core/Processing.py", line 57, in 
>>>>>     from processing.algs.qgis.QgisAlgorithmProvider import QgisAlgorithmProvider  # NOQA
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/algs/qgis/QgisAlgorithmProvider.py", line 68, in 
>>>>>     from .FieldsCalculator import FieldsCalculator
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/algs/qgis/FieldsCalculator.py", line 45, in 
>>>>>     from .ui.FieldsCalculatorDialog import FieldsCalculatorDialog
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/algs/qgis/ui/FieldsCalculatorDialog.py", line 52, in 
>>>>>     from processing.gui.PostgisTableSelector import PostgisTableSelector
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/gui/PostgisTableSelector.py", line 34, in 
>>>>>     from processing.tools.postgis import GeoDB
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/processing/tools/postgis.py", line 29, in 
>>>>>     import psycopg2.extensions  # For isolation levels
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>> ModuleNotFoundError: No module named 'psycopg2.extensions'
>>>>> 
>>>>> Python version: 3.6.5 (v3.6.5:f59c0932b4, Mar 28 2018, 05:52:31) [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)] 
>>>>> QGIS version: 3.0.2-Girona Girona, exported 
>>>>> Python Path:
>>>>> 
>>>>> /Applications/QGIS3.app/Contents/MacOS/../Resources/python
>>>>> /Users/goatsweater/Library/Application Support/QGIS/QGIS3/profiles/default/python
>>>>> /Users/goatsweater/Library/Application Support/QGIS/QGIS3/profiles/default/python/plugins
>>>>> /Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python36.zip
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages
>>>>> /Users/goatsweater/Library/Application Support/QGIS/QGIS3/profiles/default/python
>>>>> Couldn't load plugin 'MetaSearch' due to an error when calling its classFactory() method 
>>>>> ModuleNotFoundError: No module named 'owslib.csw'
>>>>> 
>>>>> Traceback (most recent call last):
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 336, in startPlugin
>>>>>     plugins[packageName] = package.classFactory(iface)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/MetaSearch/__init__.py", line 29, in classFactory
>>>>>     from MetaSearch.plugin import MetaSearchPlugin
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/MetaSearch/plugin.py", line 34, in 
>>>>>     from MetaSearch.dialogs.maindialog import MetaSearchDialog
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins/MetaSearch/dialogs/maindialog.py", line 46, in 
>>>>>     from owslib.csw import CatalogueServiceWeb # spellok
>>>>>   File "/Applications/QGIS3.app/Contents/MacOS/../Resources/python/qgis/utils.py", line 664, in _import
>>>>>     mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>> ModuleNotFoundError: No module named 'owslib.csw'
>>>>> 
>>>>> Python version: 3.6.5 (v3.6.5:f59c0932b4, Mar 28 2018, 05:52:31) [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)] 
>>>>> QGIS version: 3.0.2-Girona Girona, exported 
>>>>> Python Path:
>>>>> 
>>>>> /Applications/QGIS3.app/Contents/MacOS/../Resources/python
>>>>> /Users/goatsweater/Library/Application Support/QGIS/QGIS3/profiles/default/python
>>>>> /Users/goatsweater/Library/Application Support/QGIS/QGIS3/profiles/default/python/plugins
>>>>> /Applications/QGIS3.app/Contents/MacOS/../Resources/python/plugins
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python36.zip
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/lib-dynload
>>>>> /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages
>>>>> /Users/goatsweater/Library/Application Support/QGIS/QGIS3/profiles/default/python
>>>>> 
>>>>> 
>>>>>> On May 22, 2018, at 9:31 PM, William Kyngesburye <woklist at kyngchaos.com <mailto:woklist at kyngchaos.com>> wrote:
>>>>>> 
>>>>>>  
>>>>> 
>>>>> _______________________________________________
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>>>> -----
>>>> William Kyngesburye <kyngchaos*at*kyngchaos*dot*com>
>>>> http://www.kyngchaos.com/ <http://www.kyngchaos.com/>
>>>> 
>>>> Earth: "Mostly harmless"
>>>> 
>>>> - revised entry in the HitchHiker's Guide to the Galaxy
>>>> 
>>>> 
>>> 
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>> -----
>> William Kyngesburye <kyngchaos*at*kyngchaos*dot*com>
>> http://www.kyngchaos.com/ <http://www.kyngchaos.com/>
>> 
>> Theory of the Universe
>> 
>> There is a theory which states that if ever anyone discovers exactly what the universe is for and why it is here, it will instantly disappear and be replaced by something even more bizarrely inexplicable.  There is another theory which states that this has already happened.
>> 
>> -Hitchhiker's Guide to the Galaxy 2nd season intro
>> 
>> 
> 
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-----
William Kyngesburye <kyngchaos*at*kyngchaos*dot*com>
http://www.kyngchaos.com/

Earth: "Mostly harmless"

- revised entry in the HitchHiker's Guide to the Galaxy


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