[Ubuntu] Hello and question (2)

[Bill Kristan]

Hi - I'm using 9.04 (Jaunty, kubuntu).

Bill

On Monday 08 June 2009 10:35:03 pm Agustin Lobo wrote:
> Which version of ubuntu are you using? It seems
> that the problems are with 8.04 only (but this is
> the LTS)
>
> Agus
>
> Bill Kristan wrote:
> > Hi - finally got a chance to try out manageR, and I'm not getting any
> > errors with rgdal in 9.04. I'm able to import a mrsid image from qgis to
> > R - I used a fairly small file (about 3 MB, 5000 x 5000 pixels, 3 bands),
> > and it brought my computer to a crawl, but it worked! I don't do a lot of
> > image analysis, so not sure what needs to be tested, but a correlation
> > matrix of the three bands worked fine.
> >
> > To make this work, I did have to download and install rpy2 from a tarball
> > from the sourceforge project page, since the package provided by Ubuntu
> > is still rpy (and it still is in the next release, so far). And, I
> > installed rgdal after gdal-mrsid-src, so both gdal_MrSID and rgdal were
> > built against gdal 1.6.1.
> >
> > Bill
> >
> > On Sunday 07 June 2009 01:39:41 am Agustin Lobo wrote:
> >> I've found that, on the ubuntu 8.04 machine,
> >> gdal-mrsid-src (gdal 1.6.1) also creates a problem for package rgdal
> >>
> >> in R:
> >>  > require(rgdal)
> >>
> >> Loading required package: rgdal
> >> Loading required package: sp
> >> Error in fun(...) :
> >> 	GDAL Error 1: /usr/lib/gdal16plugins/gdal_MrSID.so: undefined symbol:
> >> _ZNSs20_S_empty_rep_storageE
> >>
> >> I can avoid the error and be able of working with rgdal (obviously not
> >> using mrsid formats) with
> >>
> >> sudo mv gdal_MrSID.so gdal_MrSID.so_nofunciona
> >>
> >> in directory
> >> /usr/lib/gdal16plugins
> >>
> >> Just FYI
> >>
> >> Agus
> >>
> >> Agustin Lobo wrote:
> >>> Hi!
> >>>
> >>> Just tested:
> >>>
> >>> 1. For the Intrepid machine:
> >>> Both
> >>> gdalinfo -formats
> >>> and
> >>> gdalinfo of5mv50sd0f299112ss0r051.sid
> >>> work fine,
> >>>
> >>> and qgis binary downloaded from Jürgen Fisher server also displays
> >>> the sid imagery fine.
> >>>
> >>> 2. For the hardy machine:
> >>> None of them work. gdalinfo -formats
> >>> does not list mrsid despite the compilation worked, see the last lines:
> >>>
> >>> checking for MrSID JPEG2000 support... enabled
> >>> checking for XTIFFClientOpen in -lgeotiff... yes
> >>> configure: creating ./config.status
> >>> config.status: creating Makefile
> >>> g++ -DFRMT_mrsid -Wall -I/usr/local/Geo_DSDK-7.0.0.2167/include
> >>> -I/usr/include/geotiff -fPIC  -DFRMT_mrsid -I/usr/include/gdal
> >>> -DMRSID_J2K -I/usr/local/Geo_DSDK-7.0.0.2167/include
> >>> -I/usr/include/geotiff   -c -o mrsiddataset.o mrsiddataset.cpp
> >>> g++ -DFRMT_mrsid -Wall -I/usr/local/Geo_DSDK-7.0.0.2167/include
> >>> -I/usr/include/geotiff -fPIC  -DFRMT_mrsid -I/usr/include/gdal
> >>> -DMRSID_J2K -I/usr/local/Geo_DSDK-7.0.0.2167/include
> >>> -I/usr/include/geotiff   -c -o mrsidstream.o mrsidstream.cpp
> >>> g++ -shared  mrsiddataset.o mrsidstream.o -lgeotiff
> >>> -L/usr/local/Geo_DSDK-7.0.0.2167/lib/Release
> >>> -L/usr/local/Geo_DSDK-7.0.0.2167/3rd-party/lib/Release -lltidsdk
> >>> -lpthread -L/usr/lib -lgdal1.6.0  -o gdal_MrSID.so
> >>> install -d /usr/lib/gdal16plugins
> >>> cp gdal_MrSID.so /usr/lib/gdal16plugins
> >>>
> >>> but then:
> >>> $ gdalinfo of5mv50sd0f299112ss0r051.sid
> >>> ERROR 1: /usr/lib/gdal16plugins/gdal_MrSID.so: undefined symbol:
> >>> _ZNSs20_S_empty_rep_storageE
> >>> ERROR 1: /usr/lib/gdal16plugins/gdal_MrSID.so: undefined symbol:
> >>> _ZNSs20_S_empty_rep_storageE
> >>> ERROR 4: `of5mv50sd0f299112ss0r051.sid' does not exist in the file
> >>> system, and is not recognised as a supported dataset name.
> >>>
> >>>
> >>> Thanks a lot for your work. Great news regarding ecw!
> >>>
> >>> Agus
> >>>
> >>> Alan Boudreault wrote:
> >>>> Hi guys,
> >>>>
> >>>> I've updated gdal-mrsid-src in UbuntuGIS. (apt-get update && ...)
> >>>>
> >>>> * I fixed symbol lookup errors (There was a new object in 1.6.x to
> >>>> include in the makefile)
> >>>> * I enabled MrSID JPEG2000 support by default.
> >>>>
> >>>> FYI, a similar package for ECW should be available in the next weeks.
> >>>>
> >>>> Thanks a lot for your tests, really appreciated. I've never used MrSID
> >>>> data, so.. :)
> >>>>
> >>>> Alan
> >>>>
> >>>> Alan Boudreault wrote:
> >>>>> Hi Bill,
> >>>>>
> >>>>> Can you send me an example of MrSID data which I could use to test
> >>>>> that ?
> >>>>> (off list, directly to my email address)
> >>>>>
> >>>>> Thanks,
> >>>>> Alan
> >>>>>
> >>>>> On June 4, 2009 12:30:34 pm Bill Kristan wrote:
> >>>>>> Hi Alan - I know there's at least one other user following this
> >>>>>> thread, so
> >>>>>> I'll make my progress report on the list...
> >>>>>>
> >>>>>> Your instructions worked great, I managed to get the plugin
> >>>>>> installed.
> >>>>>>
> >>>>>> The next problem is that when I try to run either r.in.gdal or
> >>>>>> gdal_translate I get an "undefined symbol" error
> >>>>>>
> >>>>>> gdal_translate: symbol lookup error:
> >>>>>> /usr/lib/gdal16plugins/gdal_MrSID.so:
> >>>>>> undefined symbol: _ZN12LTIVSIStreamC1Ev
> >>>>>>
> >>>>>> The configure output (and the command I used) is here:
> >>>>>>
> >>>>>> root at wkristanlt:/home/bill# gdal-mrsid-build
> >>>>>> /usr/local/GeExpress-7.0
> >>>>>>
> >>>>>> grep: /usr/local/GeExpress-7.0/include/support/lt_base.h: No such
> >>>>>> file or
> >>>>>> directory
> >>>>>> Extracting GDAL/MrSID tarball
> >>>>>> Building GDAL/MrSID plugin
> >>>>>> checking for gcc... gcc
> >>>>>> checking for C compiler default output file name... a.out
> >>>>>> checking whether the C compiler works... yes
> >>>>>> checking whether we are cross compiling... no
> >>>>>> checking for suffix of executables...
> >>>>>> checking for suffix of object files... o
> >>>>>> checking whether we are using the GNU C compiler... yes
> >>>>>> checking whether gcc accepts -g... yes
> >>>>>> checking for gcc option to accept ISO C89... none needed
> >>>>>> checking for g++... g++
> >>>>>> checking whether we are using the GNU C++ compiler... yes
> >>>>>> checking whether g++ accepts -g... yes
> >>>>>> checking for ranlib... ranlib
> >>>>>> checking for g++ -shared ... yes
> >>>>>> checking for gdal-config... /usr/bin/gdal-config
> >>>>>> using /usr/lib/gdal16plugins as GDAL shared library autoload
> >>>>>> directory checking for lt_base.h in
> >>>>>> /usr/local/GeExpress-7.0/include/support... not
> >>>>>> found.
> >>>>>> checking for lt_base.h in /usr/local/GeExpress-7.0/include... found
> >>>>>> MrSID
> >>>>>> DSDK version 7.x or newer.
> >>>>>> checking for MG3ImageWriter.h in
> >>>>>> /usr/local/GeExpress-7.0/include/mrsid_writers... no encoding
> >>>>>> support. checking for MrSID JPEG2000 support... disabled
> >>>>>> checking for XTIFFClientOpen in -lgeotiff... yes
> >>>>>> configure: creating ./config.status
> >>>>>> config.status: creating Makefile
> >>>>>>
> >>>>>> I don't see any problems there - maybe a problem with the gcc or g++
> >>>>>> version I'm using? I have several installed, but when I do g++
> >>>>>> --version I
> >>>>>> get
> >>>>>>
> >>>>>> g++ (Ubuntu 4.3.3-5ubuntu4) 4.3.3
> >>>>>>
> >>>>>> and gcc --version gives me:
> >>>>>>
> >>>>>> gcc (Ubuntu 4.3.3-5ubuntu4) 4.3.3
> >>>>>>
> >>>>>> Any ideas?
> >>>>>>
> >>>>>> Thanks,
> >>>>>> Bill
> >>>>>>
> >>>>>> ps. If it's possible to enable jpeg2000 support in this process, I'd
> >>>>>> be delighted get that working too.
> >>>>>>
> >>>>>> On Wednesday 03 June 2009, Alan Boudreault wrote:
> >>>>>>> Hi Bill,
> >>>>>>>
> >>>>>>> Here's the procedure that you have to do to build mrsid plugin:
> >>>>>>>
> >>>>>>> 1- apt-get update (just to be sure that you get the lastest
> >>>>>>> UbuntuGIS packages list)
> >>>>>>>
> >>>>>>> 2- apt-get install gdal-mrsid-src
> >>>>>>>
> >>>>>>> 3- apt-get install gdal-bin (we'll use the utility gdalinfo to
> >>>>>>> check if
> >>>>>>> the plugin is properly installed)
> >>>>>>>
> >>>>>>> 4- Run gdalinfo: gdalinfo --formats | grep -i mrsid  (at this
> >>>>>>> point... you should not see any output because the plugin is not
> >>>>>>> installed)
> >>>>>>>
> >>>>>>> 5- Download and extract the Lizard GeoSDK.
> >>>>>>>
> >>>>>>> 6- Build and install the plugin: gdal-mrsid-build
> >>>>>>> /usr/local/Geo_DSDK-7.0.0.2167 (this is an example path... you can
> >>>>>>> use any path you want.. just pass it to gdal-mrsid-build in
> >>>>>>> argument)
> >>>>>>>
> >>>>>>> 7- Re-Run gdalinfo: gdalinfo --formats | grep -i mrsid  (now, you
> >>>>>>> should
> >>>>>>> see the MrSID plugin entry)
> >>>>>>>
> >>>>>>>
> >>>>>>> Let me know if all is ok.
> >>>>>>>
> >>>>>>> Regards,
> >>>>>>> Alan
> >>>>>>>
> >>>>>>> On June 3, 2009 03:40:55 pm Bill Kristan wrote:
> >>>>>>>> Hello UbuntuGIS!
> >>>>>>>>
> >>>>>>>> I'm pleased to see you're working on packages for open source GIS
> >>>>>>>> on Ubuntu. I'm a GIS user on Kubuntu Jaunty, and it's great to
> >>>>>>>> have a source of up to date debs.
> >>>>>>>>
> >>>>>>>> I've been trying various ways to import mrsid images into GRASS,
> >>>>>>>> and have yet to find a linux-only solution (I've successfully
> >>>>>>>> exported sids
> >>>>>>>> to img files on ArcInfo in Windows, then imported them into GRASS,
> >>>>>>>> but
> >>>>>>>> that's less than ideal - Lizard Tech's mrsidgeodecode has small
> >>>>>>>> maximum
> >>>>>>>> file sizes on all its output formats, which has been a problem,
> >>>>>>>> and so
> >>>>>>>> on). It looks like the gdal-mrsid plugin on the ubuntugis ppa
> >>>>>>>> archive is just what I need, but... I'm not getting it to compile
> >>>>>>>> right. I downloaded Lizard Tech's SDK (Geo_DSDK-7.0.0.2167), and
> >>>>>>>> extracted it into /usr/local, then renamed it GeExpress-7.0
> >>>>>>>> (because that's what it
> >>>>>>>> was called in the gdal-mrsid-build.in script...hoped that would
> >>>>>>>> work, since I wasn't sure how to point to it with apt-get -b). I
> >>>>>>>> compiled the
> >>>>>>>> examples in the sdk, which worked. I then tried to build the
> >>>>>>>> package with apt-get -b source gdal-mrsid, which gave me a package
> >>>>>>>> called gdal-mrsid-src_1.6.1-1_all.deb. Installing that with dpkg
> >>>>>>>> -i seemed to
> >>>>>>>> work, but then r.in.gdal didn't recognize my test sid file, and
> >>>>>>>> doesn't
> >>>>>>>> list mrsid as a supported format. Does anybody know where I might
> >>>>>>>> be going wrong?
> >>>>>>>>
> >>>>>>>> Thanks,
> >>>>>>>>  Bill Kristan
> >>>>>>
> >>>>>> _______________________________________________
> >>>>>> Ubuntu mailing list
> >>>>>> Ubuntu at lists.osgeo.org
> >>>>>> http://lists.osgeo.org/mailman/listinfo/ubuntu