[Ubuntu] Fwd: Conflict with CDO

[Daniel Victoria]

Hi Angelos,

I added the ubuntugis-experimental PPA, along with ubuntugis-unstable, and
installed CDO. However, when I tried to list the file contents, I still get
an error.

This is how I installed CDO
m330625 at desk7802:/etc/apt/sources.list.d$ sudo apt install cdo
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following additional packages will be installed:
  python3-cdo
The following NEW packages will be installed:
  cdo python3-cdo
0 upgraded, 2 newly installed, 0 to remove and 10 not upgraded.
Need to get 2,386 kB of archives.
After this operation, 6,818 kB of additional disk space will be used.
Do you want to continue? [Y/n] y
Get:1 http://ppa.launchpad.net/ubuntugis/ubuntugis-experimental/ubuntu
focal/main amd64 cdo amd64 1.9.9~rc1-1+focal0 [2,375 kB]
Get:2 http://mirror.cnptia.embrapa.br/ubuntu focal/universe amd64
python3-cdo amd64 1.5.3-1 [11.1 kB]
Fetched 2,386 kB in 2s (1,152 kB/s)
Selecting previously unselected package cdo.
(Reading database ... 362571 files and directories currently installed.)
Preparing to unpack .../cdo_1.9.9~rc1-1+focal0_amd64.deb ...
Unpacking cdo (1.9.9~rc1-1+focal0) ...
Selecting previously unselected package python3-cdo.
Preparing to unpack .../python3-cdo_1.5.3-1_amd64.deb ...
Unpacking python3-cdo (1.5.3-1) ...
Setting up cdo (1.9.9~rc1-1+focal0) ...
Setting up python3-cdo (1.5.3-1) ...

And this is the error I get

cdo    sinfo: Processed 1 variable over 7305 timesteps [0.05s 55MB].
free(): invalid pointer
Aborted (core dumped)

Cheers
Daniel

On Sat, Mar 26, 2022 at 11:32 AM Angelos Tzotsos <gcpp.kalxas at gmail.com>
wrote:

> Hi Daniel,
>
> cdo has been rebuilt in experimental ppa:
>
>
> https://launchpad.net/~ubuntugis/+archive/ubuntu/ubuntugis-experimental/+packages?field.name_filter=&field.status_filter=published&field.series_filter=
>
> Can you please give it a try?
> You need to have both unstable and experimental ppa enabled.
>
> Cheers,
> Angelos
>
>
> On 2/21/22 13:10, Daniel Victoria wrote:
> > Thanks Angelos,
> >
> > Let me know if you need help testing the install. I have no idea how to
> > compile but I can change my PPA sources and see if everything is fine.
> I'm
> > running Ubuntu 20.04 LST.
> >
> > Cheers
> > Daniel
> >
> > On Fri, Feb 18, 2022 at 5:01 PM <ubuntu-request at lists.osgeo.org> wrote:
> >
> >> Message: 1
> >> Date: Fri, 18 Feb 2022 18:51:25 +0200
> >> From: Angelos Tzotsos <gcpp.kalxas at gmail.com>
> >> To: ubuntu at lists.osgeo.org
> >> Subject: Re: [Ubuntu] Fwd: Conflict with CDO
> >> Message-ID: <7e7a496f-b030-831d-dbf8-7f91730a99bc at gmail.com>
> >> Content-Type: text/plain; charset=UTF-8; format=flowed
> >>
> >> Hi Daniel,
> >>
> >> I will include the package for testing on the next round of package
> >> update in experimental ppa.
> >>
> >> Best,
> >> Angelos
> >>
> >> On 2/10/22 15:25, Daniel Victoria wrote:
> >>> Hi,
> >>>
> >>> First post here so sorry if this has already been discussed.
> >>>
> >>> Prior to anything, I'd like to thank for the great work in providing
> GIS
> >>> packages for Ubuntu.
> >>> I'm using the UbuntuGIS PPA and lately I had to install CDO (climate
> data
> >>> operators), provided as an Ubuntu package.
> >>>
> >>> I found out that some libs provided by UbuntuGIS are in conflict with
> >> CDO.
> >>> How can this be fixed? Could UbuntuGIS provide CDO as a package?
> >>>
> >>> https://bugs.launchpad.net/ubuntu/+source/cdo/+bug/1946727
> >>>
> >>> Thanks
> >>> Daniel
> >>>
> >>>
> >>> _______________________________________________
> >>> UbuntuGIS mailing list
> >>> Ubuntu at lists.osgeo.org
> >>> https://lists.osgeo.org/mailman/listinfo/ubuntu
> >>> http://trac.osgeo.org/ubuntugis/wiki
> >>
> >> --
> >> Angelos Tzotsos, PhD
> >> President
> >> Open Source Geospatial Foundation
> >> http://users.ntua.gr/tzotsos
> >>
> >>
> >>
> >>
> >
> > _______________________________________________
> > UbuntuGIS mailing list
> > Ubuntu at lists.osgeo.org
> > https://lists.osgeo.org/mailman/listinfo/ubuntu
> > http://trac.osgeo.org/ubuntugis/wiki
>
>
> --
> Angelos Tzotsos, PhD
> President
> Open Source Geospatial Foundation
> http://users.ntua.gr/tzotsos
>
>
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