[gdal-dev] Core dump using gdal_translate to create geopackage

Even Rouault even.rouault at spatialys.com
Mon Feb 15 06:53:14 PST 2016 

Jesse,

The geotiff would be necessary to replicate.

Even

Le lundi 15 février 2016 15:46:15, Jesse McGraw a écrit :
> I was fiddling with Even's geopackage examples
> <http://erouault.blogspot.com/2014/12/gdal-geopackage-raster-support.html>
> when I came across a core dump issue in gdal_translate
> 
> gdal version is compiled from github trunk as of 15 February 2016 under
> Ubuntu 15.10 x64
> 
>     gdal_translate --version
>     GDAL 2.1.0dev, released 2015/99/99
> 
> 
> 
> I can share the geotiff in question if need be.  Let me know if I can
> provide any other helpful information
> 
> Basic command is:
> 
>     gdal_translate \
>          Washington_SEC.tif \
>          test.gpkg \
>          -of GPKG \
>          -co TILE_FORMAT=PNG \
>          -co TILING_SCHEME=GoogleMapsCompatible
> 
> 
> Out from Valgrind is:
> 
>     jlmcgraw at UbuntuMate1504:~/Documents/myPrograms/gdal_tests$
>     CPL_DEBUG=ON \
> 
>      > valgrind --tool=memcheck --leak-check=yes --read-var-info=yes \
>      > gdal_translate \
>      > 
>      >     Washington_SEC.tif \
>      >     test.gpkg \
>      >     -of GPKG \
>      >     -co TILE_FORMAT=PNG \
>      >     -co TILING_SCHEME=GoogleMapsCompatible
> 
>     ==30978== Memcheck, a memory error detector
>     ==30978== Copyright (C) 2002-2015, and GNU GPL'd, by Julian Seward
>     et al.
>     ==30978== Using Valgrind-3.11.0 and LibVEX; rerun with -h for
>     copyright info
>     ==30978== Command: gdal_translate Washington_SEC.tif test.gpkg -of
>     GPKG -co TILE_FORMAT=PNG -co TILING_SCHEME=GoogleMapsCompatible
>     ==30978==
>     GDAL: GDALOpen(Washington_SEC.tif, this=0xf7e9d80) succeeds as GTiff.
>     Input file size is 15538, 11309
>     GDAL: GDAL_CACHEMAX = 100 MB
>     GDAL: GDALWarpKernel()::GWKGeneralCase()
>     Src=0,0,1944x1415 Dst=0,0,2737x1992
>     0GDAL: GDALWarpKernel()::GWKGeneralCase()
>     Src=1941,0,1945x1415 Dst=2737,0,2737x1992
>     .GDAL: GDALWarpKernel()::GWKGeneralCase()
>     Src=3883,0,1945x1415 Dst=5474,0,2737x1992
>     --30978-- warning: evaluate_Dwarf3_Expr: unhandled DW_OP_ 0xf2
>     --30978-- warning: evaluate_Dwarf3_Expr: unhandled DW_OP_ 0xf2
>     --30978-- warning: evaluate_Dwarf3_Expr: unhandled DW_OP_ 0xf2
>     --30978-- warning: evaluate_Dwarf3_Expr: unhandled DW_OP_ 0xf2
>     ==30978== Invalid write of size 8
>     ==30978==    at 0x4C3259F: memset (in
>     /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
>     ==30978==    by 0x5692CD8: memset (string3.h:90)
>     ==30978==    by 0x5692CD8: GDALGeoPackageDataset::ReadTile(int, int,
>     unsigned char*, bool*) (gdalgeopackagerasterband.cpp:641)
>     ==30978==    by 0x5692FA2: GDALGeoPackageDataset::ReadTile(int, int)
>     (gdalgeopackagerasterband.cpp:489)
>     ==30978==    by 0x5694B51: GDALGeoPackageRasterBand::IReadBlock(int,
>     int, void*) (gdalgeopackagerasterband.cpp:733)
>     ==30978==    by 0x5553B15: GDALRasterBand::GetLockedBlockRef(int,
>     int, int) (gdalrasterband.cpp:1142)
>     ==30978==    by 0x5572525: GDALRasterBand::IRasterIO(GDALRWFlag,
>     int, int, int, int, void*, int, int, GDALDataType, long long, long
>     long, GDALRasterIOExtraArg*) (rasterio.cpp:307)
>     ==30978==    by 0x557312A:
>     GDALDataset::BlockBasedRasterIO(GDALRWFlag, int, int, int, int,
>     void*, int, int, GDALDataType, int, int*, long long, long long, long
>     long, GDALRasterIOExtraArg*) (rasterio.cpp:2938)
>     ==30978==    by 0x551B09C: GDALDataset::RasterIO(GDALRWFlag, int,
>     int, int, int, void*, int, int, GDALDataType, int, int*, long long,
>     long long, long long, GDALRasterIOExtraArg*) (gdaldataset.cpp:1991)
>     ==30978==    by 0x551B11D: GDALDatasetRasterIO (gdaldataset.cpp:2034)
>     ==30978==    by 0x56384C4: GDALWarpOperation::WarpRegion(int, int,
>     int, int, int, int, int, int, int, int, double, double)
>     (gdalwarpoperation.cpp:1370)
>     ==30978==    by 0x56387C6: GDALWarpOperation::ChunkAndWarpImage(int,
>     int, int, int) (gdalwarpoperation.cpp:720)
>     ==30978==    by 0x57A9F5A: GDALGeoPackageDataset::CreateCopy(char
>     const*, GDALDataset*, int, char**, int (*)(double, char const*,
>     void*), void*) (ogrgeopackagedatasource.cpp:3242)
>     ==30978==  Address 0x0 is not stack'd, malloc'd or (recently) free'd
>     ==30978==
>     ==30978==
>     ==30978== Process terminating with default action of signal 11
> (SIGSEGV) ==30978==  Access not within mapped region at address 0x0
>     ==30978==    at 0x4C3259F: memset (in
>     /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
>     ==30978==    by 0x5692CD8: memset (string3.h:90)
>     ==30978==    by 0x5692CD8: GDALGeoPackageDataset::ReadTile(int, int,
>     unsigned char*, bool*) (gdalgeopackagerasterband.cpp:641)
>     ==30978==    by 0x5692FA2: GDALGeoPackageDataset::ReadTile(int, int)
>     (gdalgeopackagerasterband.cpp:489)
>     ==30978==    by 0x5694B51: GDALGeoPackageRasterBand::IReadBlock(int,
>     int, void*) (gdalgeopackagerasterband.cpp:733)
>     ==30978==    by 0x5553B15: GDALRasterBand::GetLockedBlockRef(int,
>     int, int) (gdalrasterband.cpp:1142)
>     ==30978==    by 0x5572525: GDALRasterBand::IRasterIO(GDALRWFlag,
>     int, int, int, int, void*, int, int, GDALDataType, long long, long
>     long, GDALRasterIOExtraArg*) (rasterio.cpp:307)
>     ==30978==    by 0x557312A:
>     GDALDataset::BlockBasedRasterIO(GDALRWFlag, int, int, int, int,
>     void*, int, int, GDALDataType, int, int*, long long, long long, long
>     long, GDALRasterIOExtraArg*) (rasterio.cpp:2938)
>     ==30978==    by 0x551B09C: GDALDataset::RasterIO(GDALRWFlag, int,
>     int, int, int, void*, int, int, GDALDataType, int, int*, long long,
>     long long, long long, GDALRasterIOExtraArg*) (gdaldataset.cpp:1991)
>     ==30978==    by 0x551B11D: GDALDatasetRasterIO (gdaldataset.cpp:2034)
>     ==30978==    by 0x56384C4: GDALWarpOperation::WarpRegion(int, int,
>     int, int, int, int, int, int, int, int, double, double)
>     (gdalwarpoperation.cpp:1370)
>     ==30978==    by 0x56387C6: GDALWarpOperation::ChunkAndWarpImage(int,
>     int, int, int) (gdalwarpoperation.cpp:720)
>     ==30978==    by 0x57A9F5A: GDALGeoPackageDataset::CreateCopy(char
>     const*, GDALDataset*, int, char**, int (*)(double, char const*,
>     void*), void*) (ogrgeopackagedatasource.cpp:3242)
>     ==30978==  If you believe this happened as a result of a stack
>     ==30978==  overflow in your program's main thread (unlikely but
>     ==30978==  possible), you can try to increase the size of the
>     ==30978==  main thread stack using the --main-stacksize= flag.
>     ==30978==  The main thread stack size used in this run was 8388608.
>     ==30978==
>     ==30978== HEAP SUMMARY:
>     ==30978==     in use at exit: 138,658,730 bytes in 10,473 blocks
>     ==30978==   total heap usage: 58,500 allocs, 48,027 frees,
>     326,332,504 bytes allocated
>     ==30978==
>     ==30978== 1,032 bytes in 1 blocks are possibly lost in loss record
>     4,171 of 4,283
>     ==30978==    at 0x4C2BBCF: malloc (in
>     /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
>     ==30978==    by 0x7CECC56: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CC92F5: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCC5A6: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CEB222: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D200D7: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D29826: sqlite3_step (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D2A899: sqlite3_exec (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x57B297B: SQLCommand(sqlite3*, char const*)
>     (ogrgeopackageutility.cpp:41)
>     ==30978==    by 0x57A4D5C:
>     GDALGeoPackageDataset::FinalizeRasterRegistration()
>     (ogrgeopackagedatasource.cpp:1383)
>     ==30978==    by 0x57A9CBA: GDALGeoPackageDataset::CreateCopy(char
>     const*, GDALDataset*, int, char**, int (*)(double, char const*,
>     void*), void*) (ogrgeopackagedatasource.cpp:3150)
>     ==30978==    by 0x5522F48: GDALDriver::CreateCopy(char const*,
>     GDALDataset*, int, char**, int (*)(double, char const*, void*),
>     void*) (gdaldriver.cpp:803)
>     ==30978==
>     ==30978== 1,032 bytes in 1 blocks are possibly lost in loss record
>     4,172 of 4,283
>     ==30978==    at 0x4C2BBCF: malloc (in
>     /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
>     ==30978==    by 0x7CECC56: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CC92F5: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCC5A6: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CEB222: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D200D7: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D29826: sqlite3_step (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D2A899: sqlite3_exec (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x57B297B: SQLCommand(sqlite3*, char const*)
>     (ogrgeopackageutility.cpp:41)
>     ==30978==    by 0x5695415:
>     GDALGeoPackageDataset::WriteShiftedTile(int, int, int, int, int,
>     int, int) (gdalgeopackagerasterband.cpp:1645)
>     ==30978==    by 0x5695CAC:
>     GDALGeoPackageRasterBand::IWriteBlock(int, int, void*)
>     (gdalgeopackagerasterband.cpp:2121)
>     ==30978==    by 0x555805F: GDALRasterBlock::Write()
>     (gdalrasterblock.cpp:743)
>     ==30978==
>     ==30978== 1,304 bytes in 1 blocks are possibly lost in loss record
>     4,186 of 4,283
>     ==30978==    at 0x4C2BBCF: malloc (in
>     /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
>     ==30978==    by 0x7CECC56: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CC92F5: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCC5A6: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCD0FF: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D003AE: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D007FA: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D012E8: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D0374F: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D06D63: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D09554: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D2346A: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==
>     ==30978== 3,912 bytes in 3 blocks are possibly lost in loss record
>     4,228 of 4,283
>     ==30978==    at 0x4C2BBCF: malloc (in
>     /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
>     ==30978==    by 0x7CECC56: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CC92F5: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCC5A6: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCD0FF: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D003AE: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D007FA: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D012E8: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D0374F: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D06EB7: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D09554: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D2346A: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==
>     ==30978== 710,680 bytes in 545 blocks are possibly lost in loss
>     record 4,275 of 4,283
>     ==30978==    at 0x4C2BBCF: malloc (in
>     /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
>     ==30978==    by 0x7CECC56: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CC92F5: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCC5A6: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7CCD0FF: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D003AE: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D007FA: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D012E8: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D0374F: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D09228: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D2346A: ??? (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==    by 0x7D29826: sqlite3_step (in
>     /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6)
>     ==30978==
>     ==30978== LEAK SUMMARY:
>     ==30978==    definitely lost: 0 bytes in 0 blocks
>     ==30978==    indirectly lost: 0 bytes in 0 blocks
>     ==30978==      possibly lost: 717,960 bytes in 551 blocks
>     ==30978==    still reachable: 137,940,770 bytes in 9,922 blocks
>     ==30978==                       of which reachable via heuristic:
>     ==30978==                         length64           : 483,616 bytes
>     in 2,334 blocks
>     ==30978==         suppressed: 0 bytes in 0 blocks
>     ==30978== Reachable blocks (those to which a pointer was found) are
>     not shown.
>     ==30978== To see them, rerun with: --leak-check=full
>     --show-leak-kinds=all
>     ==30978==
>     ==30978== For counts of detected and suppressed errors, rerun with: -v
>     ==30978== ERROR SUMMARY: 6 errors from 6 contexts (suppressed: 0 from
> 0) Segmentation fault (core dumped)

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