[gdal-dev] Cannot compile 3.1.0 in Centos 7
Doug Niven
dniven at ucsc.edu
Sat Jun 27 13:29:11 PDT 2020
Hi Folks,
I hope this is the right place to ask this question. If not, please send me elsewhere...
I’ve successfully built from tarball sources and installed the following to /usr/local on a Centos 7 machine:
sqlite v3.32.3
proj v6.3.2
geos 3.8.1
But I just can’t get gdal 3.1.0 to compile, and am not getting terribly verbose reasons why.
My compile.log contents are at very bottom (apologies for its length), but after make, I see:
collect2: error: ld returned 1 exit status
make[1]: *** [gdalserver] Error 1
make[1]: Leaving directory `/home/socsciadmin/gdal-3.1.0/apps’
make: *** [apps-target] Error 2
Any suggestions or pointers towards troubleshooting this would be most appreciated!
Doug
Configure process:
./configure --with-proj=/usr/local --with-geos=/usr/local
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking C_WFLAGS for maximum warnings... -Wall -Wdeclaration-after-statement
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking CXX_WFLAGS for maximum warnings... -Wall
checking whether C compiler accepts -Werror -we10006... no
checking whether C compiler accepts -diag-disable 188,1684,2259,2304,3280,11074,11076... no
checking whether C compiler accepts -Wextra... yes
checking whether C compiler accepts -Winit-self... yes
checking whether C compiler accepts -Wunused-parameter... yes
checking whether C compiler accepts -Wmissing-prototypes... yes
checking whether C compiler accepts -Wmissing-declarations... yes
checking whether C compiler accepts -Wformat... yes
checking whether C compiler accepts -Wformat -Werror=format-security -Wno-format-nonliteral... yes
checking whether C compiler accepts -Wshorten-64-to-32... no
checking whether C compiler accepts -Wlogical-op... yes
checking whether C compiler accepts -Wshadow... yes
checking whether C compiler accepts -Werror=vla... yes
checking whether C compiler accepts -Werror=declaration-after-statement... yes
checking whether C compiler accepts -Wdate-time... yes
checking whether C compiler accepts -Wnull-dereference... yes
checking whether C compiler accepts -Wduplicated-cond... yes
checking whether C++ compiler accepts -Wextra-semi... yes
checking whether C compiler accepts -Wno-sign-compare... yes
checking whether C compiler accepts -Wcomma... no
checking whether C compiler accepts -Wfloat-conversion... yes
checking whether C compiler accepts -Wdocumentation -Wno-documentation-deprecated-sync... no
checking if -std=gnu89 can be enabled... yes
checking whether C++ compiler accepts -Wunused-private-field... no
checking whether C++ compiler accepts -Wmissing-declarations... yes
checking whether C++ compiler accepts -Wnon-virtual-dtor... yes
checking whether C++ compiler accepts -Wold-style-cast... yes
checking whether C++ compiler accepts -Weffc++... yes
checking if -Weffc++ should be enabled... yes
checking whether C++ compiler accepts -Woverloaded-virtual... yes
checking whether C++ compiler accepts -fno-operator-names... yes
checking whether C++ compiler accepts -Wzero-as-null-pointer-constant... yes
checking if use C++14 compiler options... disabled by user
checking whether g++ supports C++11 features by default... yes
checking whether C++ compiler accepts -Wsuggest-override... yes
checking if -Wimplicit-fallthrough can be enabled... yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /bin/ld
checking if the linker (/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /bin/nm -B
checking the name lister (/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... gawk
checking command to parse /bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /bin/ld -m elf_x86_64
checking if the linker (/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for std::isnan... yes
checking for dlopen in -ldl... yes
checking for nanosleep in -lrt... yes
checking for sin in -lm... yes
checking for ANSI C header files... (cached) yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for unistd.h... (cached) yes
checking dbmalloc.h usability... no
checking dbmalloc.h presence... no
checking for dbmalloc.h... no
checking for dlfcn.h... (cached) yes
checking for stdint.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking values.h usability... yes
checking values.h presence... yes
checking for values.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking direct.h usability... no
checking direct.h presence... no
checking for direct.h... no
checking linux/userfaultfd.h usability... yes
checking linux/userfaultfd.h presence... yes
checking for linux/userfaultfd.h... yes
checking whether byte ordering is bigendian... no
checking for long long... yes
checking for 64bit file io... yes
checking for stat64... yes
checking for fopen64... yes
checking for ftruncate64... yes
checking size of int... 4
checking size of unsigned long... 8
checking size of void*... 8
checking for int8... no
checking for int16... no
checking for int32... no
checking for uintptr_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking for snprintf... yes
checking for vsnprintf... yes
checking for atoll... yes
checking for strtoull... yes
checking for strtof... yes
checking for getcwd... yes
checking whether strtof is declared... yes
checking for readlink... yes
checking for lstat... yes
checking for posix_spawnp... yes
checking for posix_memalign... yes
checking for vfork... yes
checking for mmap... yes
checking for sigaction... yes
checking for statvfs... yes
checking for statvfs64... yes
checking for getrlimit... yes
checking for RLIMIT_AS... yes
checking for gmtime_r... yes
checking for localtime_r... yes
checking for uselocale... yes
checking to enable debug build... no, CFLAGS="-g -O2"
checking whether GCC 4.1 atomic builtins are available... yes
checking whether GCC bswap builtins are available... yes
checking for __uint128_t... yes
checking whether SSE is available at compile time... yes
checking whether SSSE3 is available at compile time... yes
checking whether AVX is available at compile time... yes
checking to enable LTO (link time optimization) build... no
checking whether we should hide internal symbols... no
checking for local include/lib path... none
checking for pthread_create in -lpthread... yes
checking for PTHREAD_MUTEX_RECURSIVE... yes
checking for PTHREAD_MUTEX_ADAPTIVE_NP... yes
checking for pthread_spinlock_t... yes
checking for 5 args mremap()... yes
checking for _SC_PHYS_PAGES... yes
checking for deflateInit_ in -lz... yes
checking for inflateCopy in -lz... yes
using pre-installed libz
checking for ld used by GCC... /bin/ld -m elf_x86_64
checking if the linker (/bin/ld -m elf_x86_64) is GNU ld... yes
checking for shared library run path origin... /bin/sh: ./config.rpath: No such file or directory
done
checking for iconv... yes
checking for working iconv... yes
checking for iconv declaration...
extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
using ICONV_CPP_CONST=""
configure: Bash completions not requested
checking for PROJ >= 6 library... checking for proj_create_from_wkt in -lproj... yes
configure: proj.h found
checking for ZSTD_decompressStream in -lzstd... no
libzstd not found - ZSTD support disabled
checking for PostgreSQL... checking for pkg-config... /bin/pkg-config
checking pkg-config is at least version 0.21... yes
checking for PQ... no
checking for G_gisinit_2 in -lgrass5... no
checking for ffopen in -lcfitsio... no
libcfitsio not found - FITS support disabled
checking for Mopen in -lcsf... no
checking csf.h usability... no
checking csf.h presence... no
checking for csf.h... no
using internal csf code.
checking for libpng... checking for png_set_IHDR in -lpng... yes
checking png.h usability... yes
checking png.h presence... yes
checking for png.h... yes
using pre-installed libpng.
checking for libcrunch... dds support disabled.
checking for gta_version in -lgta... no
libgta not found - GTA support disabled
checking for PCIDSK... using internal libpcidsk.
checking for libtiff... checking for TIFFScanlineSize64 in -ltiff... yes
checking for _TIFFsetDoubleArray in -ltiff... yes
using pre-installed libtiff.
checking for GTIFAttachPROJContext in -lgeotiff... no
using internal GeoTIFF code.
checking for jpeg_read_scanlines in -ljpeg... yes
checking jpeglib.h usability... yes
checking jpeglib.h presence... yes
checking for jpeglib.h... yes
using pre-installed libjpeg.
checking CharLS/interface.h usability... no
checking CharLS/interface.h presence... no
checking for CharLS/interface.h... no
checking CharLS/charls.h usability... no
checking CharLS/charls.h presence... no
checking for CharLS/charls.h... no
checking charls/charls.h usability... no
checking charls/charls.h presence... no
checking for charls/charls.h... no
checking for jpeg12... disabled, libjpeg or libtiff not internal
checking for DGifOpenFileName in -lgif... no
checking gif_lib.h usability... no
checking gif_lib.h presence... no
checking for gif_lib.h... no
using internal gif code.
checking for OGDI... no
checking ecs.h usability... no
checking ecs.h presence... no
checking for ecs.h... no
checking for FMEObjects... no
SOSI support disabled.
checking for MongoCXX... MongoCXX not found.
checking for pkg-config... (cached) /bin/pkg-config
checking pkg-config is at least version 0.21... yes
checking for MONGOCXXV3... no
checking for SDreaddata in -lmfhdfalt... no
checking for SDreaddata in -lmfhdf... no
checking for SDreaddata in -lhdf4... no
checking for SDreaddata in -lmfhdf... no
checking for SDreaddata in -lmfhdf... no
checking for pkg-config... (cached) /bin/pkg-config
checking pkg-config is at least version 0.21... yes
checking for HDF5... no
checking for H5Fopen in -lhdf5... yes
checking for kea-config... no
checking for kea... no
checking for nc-config... /bin/nc-config
checking libnetcdf compiler and linker flags with nc-config...
got version="netCDF 4.3.3.1", prefix="/usr",
libs="-lnetcdf ", includedir="/usr/include"
checking for nc_open in -lnetcdf... yes
checking for netcdf-4 (and HDF5) support in libnetcdf... yes
checking for HDF4 support in libnetcdf... yes
checking for /usr/include/netcdf_mem.h... no
checking for jpc_decode in -ljasper... yes
checking for jp2_decode in -ljasper... yes
checking for pgx_decode in -ljasper... yes
checking for jp2_encode_uuid in -ljasper... no
configure: hacked JasPer version not found, GeoJP2 disabled.
checking for pkg-config... (cached) /bin/pkg-config
checking pkg-config is at least version 0.21... yes
checking for OPENJPEG... no
checking for FileGDBAPI... FileGDBAPI not found.
checking for NCScbmOpenFileView in -lNCSEcw... no
checking for NCScbmOpenFileView in -lecwj2... no
checking for Kakadu JPEG2000 support... not requested.
configure: MrSID support disabled.
configure: MrSID/MG4 Lidar support disabled.
checking for JP2Lura support... checking for MSG... not requested
checking if Oracle support is enabled... no
enabled
checking for MySQL... no
checking for Ingres... no
checking for Xerces C++ Parser... no
checking for XML_ParserCreate in -lexpat... yes
checking for Expat XML Parser headers in /usr/include... found
checking for Expat XML Parser... yes
checking if Expat XML Parser version is >= 1.95.0... yes
checking for pkg-config... (cached) /bin/pkg-config
checking pkg-config is at least version 0.25... yes
checking for LIBKML... no
checking for Google libkml headers in /usr/local/include, /usr/local/include/kml, and /usr/local/include/kml/third_party/boost_1_34_1... found
checking for Google libkml libraries... found
checking for Google libkml... yes
checking if Google libkml version is >= 1.3.0... yes
check for unixODBC
checking for SQLConnect in -lodbc... yes
checking for SQLInstallDriverEx in -lodbcinst... yes
checking for sql.h... no
sql.h not found
checking if Oracle support is enabled... no
checking for DODS... disabled
checking for curl-config... /bin/curl-config
found libcurl version 7.29.0
checking for curl_global_init in -lcurl... yes
checking for pkg-config... (cached) /bin/pkg-config
checking pkg-config is at least version 0.21... yes
checking for LIBXML2... yes
checking for xmlParseDoc in -lxml2... yes
checking for spatialite... disabled
checking for sqlite3_open in -lsqlite3... yes
checking for SQLite3 library >= 3.0.0... yes
checking for sqlite3_column_table_name in -lsqlite3... no
configure: rasterlite2 support disabled
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking for pcre_compile in -lpcre... yes
checking Checking for Teigha... disabled
configure: IBM Informix DataBlade not supported.
configure: checking whether we should include ESRI SDE support...
ESRI SDE support not requested.
checking for WebPDecodeRGB in -lwebp... no
libwebp not found - WEBP support disabled
checking for local... no
checking for sfcgal-config... no
checking qhull/libqhull.h usability... no
checking qhull/libqhull.h presence... no
checking for qhull/libqhull.h... no
checking libqhull/libqhull.h usability... no
checking libqhull/libqhull.h presence... no
checking for libqhull/libqhull.h... no
checking for OpenCL support... no
checking for FreeXL support... checking freexl.h usability... no
checking freexl.h presence... no
checking for freexl.h... no
checking for freexl_open in -lfreexl... no
checking for freexl_open in -lfreexl... no
checking for freexl_open in -lfreexl... no
checking for freexl_open in -lfreexl... no
checking for freexl_open in -lfreexl... no
libfreexl not found - FreeXL support disabled
checking for json_object_set_serializer in -ljson-c... yes
using pre-installed libjson-c
checking whether to enable PAM... yes
checking whether to build PDF driver as a plugin... no
checking for poppler... disabled
checking for podofo... disabled
checking for pdfium... disabled
checking GDAL version information from gdal_version.h.in: 3.1.0
checking for perl bindings... disabled
checking for python bindings... disabled
checking whether we should include Java support... no
HDFS support not requested.
checking for tiledb_coords in -ltiledb... no
libtiledb not found - TileDB support disabled
checking whether we should include MDB support... no
configure: checking whether we should include rasdaman support...
rasdaman support not requested.
checking for rdb_library_name in -lrdb... no
librdb not found - RDB support disabled
checking whether we should include Armadillo support... no
checking for cryptopp... no
checking for crypto... checking for EVP_sha256 in -lcrypto... yes
checking openssl/bio.h usability... yes
checking openssl/bio.h presence... yes
checking for openssl/bio.h... yes
checking for LERC... enabled
checking for NULL... disabled
checking for pkg-config... (cached) /bin/pkg-config
checking pkg-config is at least version 0.21... yes
checking for EXR... no
checking if sprintf can be overloaded for GDAL compilation... yes
configure: creating ./config.status
config.status: creating GDALmake.opt
config.status: creating port/cpl_config.h
config.status: port/cpl_config.h is unchanged
config.status: executing libtool commands
GDAL is now configured for x86_64-pc-linux-gnu
Installation directory: /usr/local
C compiler: gcc -DHAVE_AVX_AT_COMPILE_TIME -DHAVE_SSSE3_AT_COMPILE_TIME -DHAVE_SSE_AT_COMPILE_TIME -g -O2
C++ compiler: g++ -DHAVE_AVX_AT_COMPILE_TIME -DHAVE_SSSE3_AT_COMPILE_TIME -DHAVE_SSE_AT_COMPILE_TIME -g -O2
C++14 support: no
LIBTOOL support: yes
LIBZ support: external
LIBLZMA support: no
ZSTD support: no
cryptopp support: no
crypto/openssl support: yes
GRASS support: no
CFITSIO support: no
PCRaster support: internal
LIBPNG support: external
DDS support: no
GTA support: no
LIBTIFF support: external (BigTIFF=yes)
LIBGEOTIFF support: internal
LIBJPEG support: external
12 bit JPEG: no
12 bit JPEG-in-TIFF: no
LIBGIF support: internal
JPEG-Lossless/CharLS: no
OGDI support: no
HDF4 support: no
HDF5 support: yes
Kea support: no
NetCDF support: yes
NetCDF has netcdf_mem.h: no
Kakadu support: no
JasPer support: yes (GeoJP2=no)
OpenJPEG support: no
ECW support: no
MrSID support: no
MrSID/MG4 Lidar support: no
JP2Lura support: no
MSG support: no
EPSILON support: no
WebP support: no
cURL support (wms/wcs/...):yes
PostgreSQL support: no
LERC support: yes
MySQL support: no
Ingres support: no
Xerces-C support: no
Expat support: yes
libxml2 support: yes
Google libkml support: yes
ODBC support: no
FGDB support: no
MDB support: no
PCIDSK support: internal
OCI support: no
GEORASTER support: no
SDE support: no
Rasdaman support: no
RDB support: no
DODS support: no
SQLite support: yes
PCRE support: yes
SpatiaLite support: no
RasterLite2 support: no
Teigha (DWG and DGNv8): no
INFORMIX DataBlade support:no
GEOS support: no
SFCGAL support: no
QHull support: internal
Poppler support: no
Podofo support: no
PDFium support: no
OpenCL support: no
Armadillo support: no
FreeXL support: no
SOSI support: no
MongoDB support: no
MongoCXX v3 support: no
HDFS support: no
TileDB support: no
EXR support: no
userfaultfd support: yes
misc. gdal formats: aaigrid adrg aigrid airsar arg blx bmp bsb cals ceos ceos2 coasp cosar ctg dimap dted e00grid elas envisat ers fit gff gsg gxf hf2 idrisi ignfheightasciigrid ilwis ingr iris iso8211 jaxapalsar jdem kmlsuperoverlay l1b leveller map mrf msgn ngsgeoid nitf northwood pds prf r raw rmf rs2 safe saga sdts sentinel2 sgi sigdem srtmhgt terragen til tsx usgsdem xpm xyz zmap rik ozi grib eeda plmosaic rda wcs wms wmts daas rasterlite mbtiles pdf
disabled gdal formats:
misc. ogr formats: aeronavfaa arcgen avc bna cad csv dgn dxf edigeo flatgeobuf geoconcept georss gml gmt gpsbabel gpx gtm htf jml mapml mvt ntf openair openfilegdb pgdump rec s57 segukooa segy selafin shape sua svg sxf tiger vdv wasp xplane idrisi pds sdts ods xlsx amigocloud carto cloudant couchdb csw elastic ngw plscenes wfs gpkg vfk osm
disabled ogr formats:
SWIG Bindings: no
PROJ >= 6: yes
enable GNM building: yes
enable pthread support: yes
enable POSIX iconv support:yes
hide internal symbols: no
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