[GeoNode-devel] GeoServer crashed in GeoNode 2.10

[Paolo Pasquali]

Dear devs,

Please find attached the full geoserver.log since tomcat restart and after
removing the out of sync gwc layers.
Thanks.

Ciao

P.

On Mon, Nov 23, 2020 at 12:37 PM Paolo Pasquali <paolo.pasquali at gmail.com>
wrote:

> Dear devs,
>
> I've removed all layer configuration files in gwc-layers that were
> causing errors but still GeoServer does not start.
> The Tomcat log file caught some errors:
>
> 23-Nov-2020 11:26:58.714 SEVERE [localhost-startStop-1]
> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
> The web application [geoserver] created a ThreadLocal with key of type
> [com.sun.jna.Structure$2] (value [com.sun.jna.Structure$2 at 26050621]) and
> a value of type [com.sun.jna.Structure.StructureSet] (value [[]]) but
> failed to remove it when the web application was stopped. Threads are going
> to be renewed over time to try and avoid a probable memory leak.
>
> 23-Nov-2020 11:26:58.714 SEVERE [localhost-startStop-1]
> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
> The web application [geoserver] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal at 215fba9b]) and a
> value of type
> [org.springframework.security.core.context.SecurityContextImpl] (value
> [org.springframework.security.core.context.SecurityContextImpl at ffffffff:
> Null authentication]) but failed to remove it when the web application was
> stopped. Threads are going to be renewed over time to try and avoid a
> probable memory leak.
>
> 23-Nov-2020 11:26:58.723 SEVERE [localhost-startStop-1]
> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
> The web application [geoserver] created a ThreadLocal with key of type
> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal at 53488849]) and a
> value of type
> [org.geotools.referencing.operation.projection.TransverseMercator.Provider]
> (value [PROJECTION["Transverse_Mercator"]]) but failed to remove it when
> the web application was stopped. Threads are going to be renewed over time
> to try and avoid a probable memory leak.
>
> 23-Nov-2020 11:26:58.723 SEVERE [localhost-startStop-1]
> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
> The web application [geoserver] created a ThreadLocal with key of type
> [java.lang.ThreadLocal.SuppliedThreadLocal] (value
> [java.lang.ThreadLocal$SuppliedThreadLocal at 1c220bed]) and a value of type
> [org.geowebcache.storage.CompositeBlobStore.StoreSuitabilityCheck] (value
> [EXISTING]) but failed to remove it when the web application was stopped.
> Threads are going to be renewed over time to try and avoid a probable
> memory leak.
>
> While the GeoServer log has some warnings only, some are:
>
> 2020-11-23 11:31:42,676 WARN [geoserver.config] - Error reading resource
> URL
> [jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties]
>
> java.io.FileNotFoundException: URL
> [jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties]
> cannot be resolved to absolute file path because it does not reside in the
> file system:
> jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties
> ...
>
> 2020-11-23 11:31:43,581 WARN [ejb.Ejb3Configuration] -
> hibernate.connection.autocommit = false break the EJB3 specification
>
> 2020-11-23 11:31:43,613 WARN [dialect.H2Dialect] - The 1.1.119 version of
> H2 implements temporary table creation such that it commits current
> transaction; multi-table, bulk hql/jpaql will not work properly
>
> 2020-11-23 11:31:43,863 WARN [dialect.H2Dialect] - The 1.1.119 version of
> H2 implements temporary table creation such that it commits current
> transaction; multi-table, bulk hql/jpaql will not work properly
>
> 2020-11-23 11:31:44,033 WARN [cache.EhCacheProvider] - Could not find
> configuration [RuleLimits]; using defaults.
>
> 2020-11-23 11:31:44,077 WARN [cache.EhCacheProvider] - Could not find
> configuration [Rule]; using defaults.
>
> 2020-11-23 11:31:44,085 WARN [cache.EhCacheProvider] - Could not find
> configuration [usergroup]; using defaults.
>
> 2020-11-23 11:31:44,090 WARN [cache.EhCacheProvider] - Could not find
> configuration [GSUser]; using defaults.
>
> 2020-11-23 11:31:44,096 WARN [cache.EhCacheProvider] - Could not find
> configuration [GFUser]; using defaults.
>
> 2020-11-23 11:31:44,101 WARN [cache.EhCacheProvider] - Could not find
> configuration [gsinstance]; using defaults.
>
> 2020-11-23 11:31:44,107 WARN [cache.EhCacheProvider] - Could not find
> configuration [LayerDetails]; using defaults.
>
> 2020-11-23 11:31:45,527 WARN [org.geoserver] - Failed to load data store
> 'geonode_data'
>
> Any hint on how to proceed?
>
> Thanks!
>
> Paolo
>
>
>
> On Mon, Nov 23, 2020 at 10:28 AM Paolo Pasquali <paolo.pasquali at gmail.com>
> wrote:
>
>> Dear devs,
>>
>> While updating some layers metadata using the GeoNode admin UI, suddenly
>> GeoServer crashed and now I'm not able to restart it anymore.
>> From the logs I get some errors:
>>
>>
>> ERROR [context.ContextLoader] - Context initialization failed
>>
>> org.springframework.beans.factory.BeanCreationException: Error creating
>> bean with name 'wcsService-1.0.0' defined in URL
>>
>> Invocation of init method failed; nested exception is
>> java.lang.IllegalStateException: Could not locate a layer or layer group
>> with id LayerInfoImpl-52979d4a:172b8fc663e:-33fe within GeoServer
>> configuration, the GWC configuration seems to be out of synch
>>
>>
>> I have this kind of error related to several layers. My guess they are
>> related to the layers I tried to update in the admin ui.
>>
>>
>> The solution I've found on the web suggests removing the layers from the
>> gwc-layers folders and then running updatelayers.
>>
>>
>> Is this the only solution? Is there a painless fix?
>>
>>
>> Thanks for your help.
>>
>>
>> Ciao
>>
>>
>> P.
>>
>>
>>
>>
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