[GeoNode-devel] GeoServer crashed in GeoNode 2.10

Mon Nov 23 09:21:07 PST 2020

Hello Paolo,
if you are doing a fresh installation, why are you using GeoNode 2.10?

Il giorno lun 23 nov 2020 alle ore 18:10 Paolo Pasquali <
paolo.pasquali at gmail.com> ha scritto:

> Hi,
>
> Sorry for the spam.
> I made a fresh installation and an empty GeoServer crashed after the first
> restart when I was configuring uwgi and nginx (2.10 Advanced installation
> on Ubuntu 18).
> I'm not able to start it again in any way. I'm getting the same errors on
> the two servers.
>
> Is there any known issue? Should I upgrade java to 11?
>
> Thanks,
>
> P.
>
>
>
>
>
> On Mon, Nov 23, 2020 at 2:41 PM Paolo Pasquali <paolo.pasquali at gmail.com>
> wrote:
>
>> Dear devs,
>>
>> Please find attached the full geoserver.log since tomcat restart and
>> after removing the out of sync gwc layers.
>> Thanks.
>>
>> Ciao
>>
>> P.
>>
>> On Mon, Nov 23, 2020 at 12:37 PM Paolo Pasquali <paolo.pasquali at gmail.com>
>> wrote:
>>
>>> Dear devs,
>>>
>>> I've removed all layer configuration files in gwc-layers that were
>>> causing errors but still GeoServer does not start.
>>> The Tomcat log file caught some errors:
>>>
>>> 23-Nov-2020 11:26:58.714 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>> The web application [geoserver] created a ThreadLocal with key of type
>>> [com.sun.jna.Structure$2] (value [com.sun.jna.Structure$2 at 26050621])
>>> and a value of type [com.sun.jna.Structure.StructureSet] (value [[]]) but
>>> failed to remove it when the web application was stopped. Threads are going
>>> to be renewed over time to try and avoid a probable memory leak.
>>>
>>> 23-Nov-2020 11:26:58.714 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>> The web application [geoserver] created a ThreadLocal with key of type
>>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal at 215fba9b]) and a
>>> value of type
>>> [org.springframework.security.core.context.SecurityContextImpl] (value
>>> [org.springframework.security.core.context.SecurityContextImpl at ffffffff:
>>> Null authentication]) but failed to remove it when the web application was
>>> stopped. Threads are going to be renewed over time to try and avoid a
>>> probable memory leak.
>>>
>>> 23-Nov-2020 11:26:58.723 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>> The web application [geoserver] created a ThreadLocal with key of type
>>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal at 53488849]) and a
>>> value of type
>>> [org.geotools.referencing.operation.projection.TransverseMercator.Provider]
>>> (value [PROJECTION["Transverse_Mercator"]]) but failed to remove it when
>>> the web application was stopped. Threads are going to be renewed over time
>>> to try and avoid a probable memory leak.
>>>
>>> 23-Nov-2020 11:26:58.723 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>> The web application [geoserver] created a ThreadLocal with key of type
>>> [java.lang.ThreadLocal.SuppliedThreadLocal] (value
>>> [java.lang.ThreadLocal$SuppliedThreadLocal at 1c220bed]) and a value of
>>> type [org.geowebcache.storage.CompositeBlobStore.StoreSuitabilityCheck]
>>> (value [EXISTING]) but failed to remove it when the web application was
>>> stopped. Threads are going to be renewed over time to try and avoid a
>>> probable memory leak.
>>>
>>> While the GeoServer log has some warnings only, some are:
>>>
>>> 2020-11-23 11:31:42,676 WARN [geoserver.config] - Error reading resource
>>> URL
>>> [jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties]
>>>
>>> java.io.FileNotFoundException: URL
>>> [jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties]
>>> cannot be resolved to absolute file path because it does not reside in the
>>> file system:
>>> jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties
>>> ...
>>>
>>> 2020-11-23 11:31:43,581 WARN [ejb.Ejb3Configuration] -
>>> hibernate.connection.autocommit = false break the EJB3 specification
>>>
>>> 2020-11-23 11:31:43,613 WARN [dialect.H2Dialect] - The 1.1.119 version
>>> of H2 implements temporary table creation such that it commits current
>>> transaction; multi-table, bulk hql/jpaql will not work properly
>>>
>>> 2020-11-23 11:31:43,863 WARN [dialect.H2Dialect] - The 1.1.119 version
>>> of H2 implements temporary table creation such that it commits current
>>> transaction; multi-table, bulk hql/jpaql will not work properly
>>>
>>> 2020-11-23 11:31:44,033 WARN [cache.EhCacheProvider] - Could not find
>>> configuration [RuleLimits]; using defaults.
>>>
>>> 2020-11-23 11:31:44,077 WARN [cache.EhCacheProvider] - Could not find
>>> configuration [Rule]; using defaults.
>>>
>>> 2020-11-23 11:31:44,085 WARN [cache.EhCacheProvider] - Could not find
>>> configuration [usergroup]; using defaults.
>>>
>>> 2020-11-23 11:31:44,090 WARN [cache.EhCacheProvider] - Could not find
>>> configuration [GSUser]; using defaults.
>>>
>>> 2020-11-23 11:31:44,096 WARN [cache.EhCacheProvider] - Could not find
>>> configuration [GFUser]; using defaults.
>>>
>>> 2020-11-23 11:31:44,101 WARN [cache.EhCacheProvider] - Could not find
>>> configuration [gsinstance]; using defaults.
>>>
>>> 2020-11-23 11:31:44,107 WARN [cache.EhCacheProvider] - Could not find
>>> configuration [LayerDetails]; using defaults.
>>>
>>> 2020-11-23 11:31:45,527 WARN [org.geoserver] - Failed to load data store
>>> 'geonode_data'
>>>
>>> Any hint on how to proceed?
>>>
>>> Thanks!
>>>
>>> Paolo
>>>
>>>
>>>
>>> On Mon, Nov 23, 2020 at 10:28 AM Paolo Pasquali <
>>> paolo.pasquali at gmail.com> wrote:
>>>
>>>> Dear devs,
>>>>
>>>> While updating some layers metadata using the GeoNode admin UI,
>>>> suddenly GeoServer crashed and now I'm not able to restart it anymore.
>>>> From the logs I get some errors:
>>>>
>>>>
>>>> ERROR [context.ContextLoader] - Context initialization failed
>>>>
>>>> org.springframework.beans.factory.BeanCreationException: Error creating
>>>> bean with name 'wcsService-1.0.0' defined in URL
>>>>
>>>> Invocation of init method failed; nested exception is
>>>> java.lang.IllegalStateException: Could not locate a layer or layer group
>>>> with id LayerInfoImpl-52979d4a:172b8fc663e:-33fe within GeoServer
>>>> configuration, the GWC configuration seems to be out of synch
>>>>
>>>>
>>>> I have this kind of error related to several layers. My guess they are
>>>> related to the layers I tried to update in the admin ui.
>>>>
>>>>
>>>> The solution I've found on the web suggests removing the layers from
>>>> the gwc-layers folders and then running updatelayers.
>>>>
>>>>
>>>> Is this the only solution? Is there a painless fix?
>>>>
>>>>
>>>> Thanks for your help.
>>>>
>>>>
>>>> Ciao
>>>>
>>>>
>>>> P.
>>>>
>>>>
>>>>
>>>> _______________________________________________
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