[GRASS-SVN] r58857 - in grass/branches/releasebranch_6_4/raster/r.li: . r.li.edgedensity r.li.pielou
svn_grass at osgeo.org
svn_grass at osgeo.org
Mon Feb 3 13:06:14 PST 2014
Author: neteler
Date: 2014-02-03 13:06:14 -0800 (Mon, 03 Feb 2014)
New Revision: 58857
Modified:
grass/branches/releasebranch_6_4/raster/r.li/description.html
grass/branches/releasebranch_6_4/raster/r.li/r.li.edgedensity/description.html
grass/branches/releasebranch_6_4/raster/r.li/r.li.pielou/description.html
Log:
r.li.* manual: HTML cosmetics
Modified: grass/branches/releasebranch_6_4/raster/r.li/description.html
===================================================================
--- grass/branches/releasebranch_6_4/raster/r.li/description.html 2014-02-03 17:28:13 UTC (rev 58856)
+++ grass/branches/releasebranch_6_4/raster/r.li/description.html 2014-02-03 21:06:14 UTC (rev 58857)
@@ -10,11 +10,15 @@
<img src="grass_logo.png" alt="GRASS logo"><hr align=center size=6 noshade>
<h2>NAME</h2>
+
<em><b>r.li</b></em> - Landscape structure analysis package overview.
<h2>KEYWORDS</h2>
-raster, landscape structure analysis, overview, landscape metrics, landscape pattern, landscape analysis
+raster, landscape structure analysis, overview, landscape metrics,
+landscape pattern, landscape analysis
+
+
<h2>DESCRIPTION</h2>
The <em>r.li</em> suite is a toolset for multiscale analysis of landscape structure.
@@ -73,7 +77,7 @@
r.li.setup
</pre></div>
<li> The main <em>r.li.setup</em> window is displayed, click on "New"
- <li> Now it is displayed the new configuration window,
+ <li> Now it is displayed the new configuration window,
enter the configuration file name (e.g., "my_conf", do not use absolute paths)
and the name of raster map (e.g., "geology").
The other fields are not needed for this configuration.
@@ -82,28 +86,30 @@
<li> Click on "Use keyboard to enter moving window dimension"
<li> Select "Rectangle" and enter 5 on "heigth" and "width" fields
<li> Click on "Save settings"
- <li> Close <em>r.li.setup</em> window
+ <li> Close the <em>r.li.setup</em> window
</ol>
+
<li> CALCULATE PATCHDENSITY INDEX
-<ol>
- <li> set region settings to geology raster map:
+ <ol>
+ <li> set the region settings to the "<tt>geology</tt>" raster map:
<div class="code"><pre>
- g.region rast=geology -p
+ g.region rast=geology -p
</pre></div>
- <li> run <em>r.li.patchdensity</em>:
+
+ <li> run <em>r.li.patchdensity</em>:
<div class="code"><pre>
- r.li.patchdensity map=geology conf=my_conf out=patchdens
+ r.li.patchdensity map=geology conf=my_conf out=patchdens
</pre></div>
</ol>
</ol>
-The resulting patch density is stored in "patchdens" raster map.
+The resulting patch density is stored in "<tt>patchdens</tt>" raster map.
You can verify the result for example with contour lines:
<div class="code"><pre>
-r.contour in=patchdens out=patchdens step=5
-d.rast patchdens
-d.vect -c patchdens
+ r.contour in=patchdens out=patchdens step=5
+ d.rast patchdens
+ d.vect -c patchdens
</pre></div>
Note that if you want to run another index with the same area
@@ -118,7 +124,7 @@
<h2>SEE ALSO</h2>
<b>Core modules</b>:
-</ul>
+<ul>
<li> <a href="r.li.daemon.html">r.li.daemon</a>: job launch daemon</li>
<li> <a href="r.li.setup.html">r.li.setup</a>: Configuration editor for r.li.'index'</li>
</ul>
@@ -126,34 +132,39 @@
<b>Patch indices</b>:
<ul>
<li>Indices based on patch number:
-</ul>
+<ul>
<li> <a href="r.li.patchdensity.html">r.li.patchdensity</a>: Calculates patch density index on a raster map, using a 4 neighbour algorithm</li>
<li> <a href="r.li.patchnum.html">r.li.patchnum</a>: Calculates patch number index on a raster map, using a 4 neighbour algorithm</li>
+</ul>
+
+<li>Indices based on patch dimension:
<ul>
-<li>Indices based on patch dimension:
-</ul>
<li> <a href="r.li.mps.html">r.li.mps</a>: Calculates mean patch size index on a raster map, using a 4 neighbour algorithm</li>
<li> <a href="r.li.padcv.html">r.li.padcv</a>: Calculates coefficient of variation of patch area on a raster map</li>
<li> <a href="r.li.padrange.html">r.li.padrange</a>: Calculates range of patch area size on a raster map</li>
<li> <a href="r.li.padsd.html">r.li.padsd</a>: Calculates standard deviation of patch area a raster map</li>
+</ul>
+
+<li>Indices based on patch shape:
<ul>
-<li>Indices based on patch shape:
+ <li> <a href="r.li.shape.html">r.li.shape</a>: Calculates shape index on a raster map</li>
</ul>
- <li> <a href="r.li.shape.html">r.li.shape</a>: Calculates shape index on a raster map</li>
+
+<li>Indices based on patch edge: <!-- border? -->
<ul>
-<li>Indices based on patch edge: <!-- border? -->
+ <li> <a href="r.li.edgedensity.html">r.li.edgedensity</a>: Calculates edge density index on a raster map, using a 4 neighbour algorithm</li>
</ul>
- <li> <a href="r.li.edgedensity.html">r.li.edgedensity</a>: Calculates edge density index on a raster map, using a 4 neighbour algorithm</li>
+
+<li>Indices based on patch attributes:
<ul>
-<li>Indices based on patch attributes:
-</ul>
<li> <a href="r.li.cwed.html">r.li.cwed</a>: Calculates contrast Weighted Edge Density index on a raster map</li>
<li> <a href="r.li.mpa.html">r.li.mpa</a>: Calculates mean pixel attribute index on a raster map</li>
</ul>
+
</ul>
<b>Diversity indices</b>:
-</ul>
+<ul>
<li> <a href="r.li.dominance.html">r.li.dominance</a>: Calculates dominance diversity index on a raster map</li>
<li> <a href="r.li.pielou.html">r.li.pielou</a>: Calculates Pielou eveness index on a raster map</li>
<li> <a href="r.li.renyi.html">r.li.renyi</a>: Calculates Renyi entropy on a raster map</li>
@@ -162,30 +173,43 @@
<li> <a href="r.li.simpson.html">r.li.simpson</a>: Calculates Simpson diversity index on a raster map</li>
</ul>
+
<h2>ADDING NEW INDICES</h2>
-New indices can be defined and implemented by any C programmer, without having to
-deal with all basic functions (IO etc.). The computing architecture and the functions
-are clearly separated, thus allowing an easy expandability. Every index is defined
-separately, placed in a directory along with its Makefile for compiling it and a file
-description.html which describes the index including a simple example of use.
+New indices can be defined and implemented by any C programmer, without
+having to deal with all basic functions (IO etc.). The computing
+architecture and the functions are clearly separated, thus allowing an
+easy expandability. Every index is defined separately, placed in a
+directory along with its Makefile for compiling it and a file
+description.html which describes the index including a simple example of
+use.
+
+
<h2>REFERENCES</h2>
McGarigal, K., and B. J. Marks. 1995. FRAGSTATS: spatial pattern
analysis program for quantifying landscape structure. USDA For. Serv.
-Gen. Tech. Rep. PNW-351 (<a href="http://www.fs.fed.us/pnw/pubs/gtr_351.pdf">PDF</a>).
+Gen. Tech. Rep. PNW-351
+ (<a href="http://www.fs.fed.us/pnw/pubs/gtr_351.pdf">PDF</a>).
+
<h2>AUTHORS</h2>
+
<a href="mailto:porta at cli.di.unipi.it">Claudio Porta</a> and
-<a href="mailto:spano at cli.di.unipi.it">Lucio Davide Spano</a>, students of Computer Science
-University of Pisa (Italy). <br>
+<a href="mailto:spano at cli.di.unipi.it">Lucio Davide Spano</a>,
+ students of Computer Science
+University of Pisa (Italy).<br>
Commission from Faunalia Pontedera (PI)<br>
<p>
<i>Last changed: $Date$</i>
+
<hr>
+
<p>
-<a href="index.html">Main index</a> - <a href="raster.html">raster index</a>
- - <a href="full_index.html">Full index</a>
+<a href="index.html">Main index</a>
+ - <a href="raster.html">Raster index</a>
+ - <a href="full_index.html">Full index</a>
+
</body>
</html>
Modified: grass/branches/releasebranch_6_4/raster/r.li/r.li.edgedensity/description.html
===================================================================
--- grass/branches/releasebranch_6_4/raster/r.li/r.li.edgedensity/description.html 2014-02-03 17:28:13 UTC (rev 58856)
+++ grass/branches/releasebranch_6_4/raster/r.li/r.li.edgedensity/description.html 2014-02-03 21:06:14 UTC (rev 58857)
@@ -49,21 +49,6 @@
r.li.edgedensity map=my_map conf=my_conf output=my_out patch_type=34
</pre></div>
-<h2>NOTES</h2>
-Do not use absolute path names for output files. They are raster if
-moving window disposition was selected, otherwise they are text files in the
-<tt>$HOME/.r.li/output/</tt> folder.
-<br>
-If input raster is full of null values <em>r.li.edgedensity</em> consider to have 0
-patch.<br>
-If area is 0 <em>r.li.edgedensity</em> returns -1; this is possible only if input
-raster is masked.
-If you want to have null values instead run <br>
-<div class="code"><pre>
-r.null setnull=-1 map=my_map
-</pre></div>
-after index calculation.
-
<h2>SEE ALSO</h2>
<em>
<a href="r.li.html">r.li</a>
Modified: grass/branches/releasebranch_6_4/raster/r.li/r.li.pielou/description.html
===================================================================
--- grass/branches/releasebranch_6_4/raster/r.li/r.li.pielou/description.html 2014-02-03 17:28:13 UTC (rev 58856)
+++ grass/branches/releasebranch_6_4/raster/r.li/r.li.pielou/description.html 2014-02-03 21:06:14 UTC (rev 58857)
@@ -48,5 +48,6 @@
Luca Delucchi and Duccio Rocchini, Fondazione E. Mach (Italy), based on the <em>r.li.shannon</em> code
developed by Serena Pallecchi student of Computer Science University of Pisa (Italy).<br>
-<p><i>Last changed: $Date$</i>
+<p>
+<i>Last changed: $Date$</i>
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