[GRASS-dev] installing v.kriging addon fails
Paulo van Breugel
p.vanbreugel at gmail.com
Thu Oct 1 03:51:05 PDT 2015
On 29-09-15 15:46, Anna Petrášová wrote:
>
>
> On Tue, Sep 29, 2015 at 8:25 AM, Moritz Lennert
> <mlennert at club.worldonline.be <mailto:mlennert at club.worldonline.be>>
> wrote:
>
> On 29/09/15 11:09, Paulo van Breugel wrote:
>
> Installing v.kriging (on GRASS dev, Linux) addons fails with
> the following:
>
> GRASS 7.1.svn (latlon):~ > g.extension v.kriging
> WARNING: Extension <v.kriging> already installed. Re-installing...
> Fetching <v.kriging> from GRASS GIS Addons repository (be
> patient)...
> Compiling...
> In file included from geostat.c:1:0:
> local_proto.h:72:3: error: unknown type name ‘mat_struct’
> mat_struct *trend;
> ^
> local_proto.h:113:3: error: unknown type name ‘mat_struct’
> mat_struct *gamma; // experimental variogram matrix
> ^
> local_proto.h:124:3: error: unknown type name ‘mat_struct’
> mat_struct *A; // plan matrix
> ^
> local_proto.h:125:3: error: unknown type name ‘mat_struct’
> mat_struct *T; // coefficients of theoretical
> variogram
> ^
> local_proto.h:126:3: error: unknown type name ‘mat_struct’
> mat_struct *GM; // GM = theor_var(dist: input,
> output points)
> ^
> local_proto.h:218:1: error: unknown type name ‘mat_struct’
> mat_struct *LSM(mat_struct *, mat_struct *);
> ^
> local_proto.h:218:17: error: unknown type name ‘mat_struct’
> mat_struct *LSM(mat_struct *, mat_struct *);
> ^
> local_proto.h:218:31: error: unknown type name ‘mat_struct’
> mat_struct *LSM(mat_struct *, mat_struct *);
> ^
> local_proto.h:219:1: error: unknown type name ‘mat_struct’
> mat_struct *nonlin_LMS(int , double *, double *);
> ^
> local_proto.h:226:24: error: unknown type name ‘mat_struct’
> double bivar_sill(int, mat_struct *);
> ^
> local_proto.h:245:68: error: unknown type name ‘mat_struct’
> void write2file_variogram_E(struct int_par *, struct
> parameters *,
> mat_struct *);
> ^
> local_proto.h:250:1: error: unknown type name ‘mat_struct’
> mat_struct *set_up_G(struct points *, struct parameters *,
> struct
> write *);
> ^
> local_proto.h:251:1: error: unknown type name ‘mat_struct’
> mat_struct *set_up_g0(struct int_par *, struct points *,
> struct ilist
> *, double *, struct parameters *);
> ^
> local_proto.h:252:1: error: unknown type name ‘mat_struct’
> mat_struct *submatrix(struct ilist *, mat_struct *, struct
> write *);
> ^
> local_proto.h:252:39: error: unknown type name ‘mat_struct’
> mat_struct *submatrix(struct ilist *, mat_struct *, struct
> write *);
> ^
> local_proto.h:253:49: error: unknown type name ‘mat_struct’
> double result(struct points *, struct ilist *, mat_struct *);
> ^
> geostat.c: In function ‘E_variogram’:
> geostat.c:101:5: error: unknown type name ‘mat_struct’
> mat_struct *gamma_M; // gamma matrix (hz, vert or
> bivar)
> ^
> geostat.c:102:5: error: unknown type name ‘mat_struct’
> mat_struct *c_M; // matrix of # of
> dissimilarities
> ^
> geostat.c:145:9: warning: assignment makes pointer from
> integer without
> a cast [enabled by default]
> c_M = G_matrix_init(nrows, ncols, nrows); // temporal
> matrix of
> counts
> ^
> geostat.c:146:13: warning: assignment makes pointer from
> integer without
> a cast [enabled by default]
> gamma_M = G_matrix_init(nrows, ncols, nrows); //
> temporal
> matrix (vector) of gammas
> ^
> geostat.c:158:13: error: request for member ‘vals’ in
> something not a
> structure or union
> c = &c_M->vals[0];
> ^
> geostat.c:159:21: error: request for member ‘vals’ in
> something not a
> structure or union
> gamma = &gamma_M->vals[0];
> ^
> geostat.c:308:21: warning: assignment makes pointer from
> integer without
> a cast [enabled by default]
> var_pars->gamma = G_matrix_copy(gamma_M);
> ^
> geostat.c: In function ‘ordinary_kriging’:
> geostat.c:516:5: error: unknown type name ‘mat_struct’
> mat_struct *GM;
> ^
> geostat.c:517:5: error: unknown type name ‘mat_struct’
> mat_struct *GM_sub; // submatrix of selected points
> ^
> geostat.c:518:5: error: unknown type name ‘mat_struct’
> mat_struct *GM_Inv; // inverted GM (GM_sub) matrix
> ^
> geostat.c:519:5: error: unknown type name ‘mat_struct’
> mat_struct *g0; // diffences between known
> and unknown
> values = theor_var(dist)
> ^
> geostat.c:520:5: error: unknown type name ‘mat_struct’
> mat_struct *w0; // weights of values located
> on the
> input points
> ^
> geostat.c:545:17: warning: assignment makes pointer from
> integer without
> a cast [enabled by default]
> var_par->GM = G_matrix_copy(GM); // copy matrix
> because of
> cross validation
> ^
> geostat.c:589:28: warning: assignment makes pointer from
> integer without
> a cast [enabled by default]
> GM_sub = submatrix(list, GM, report);
> //
> make submatrix for selected points
> ^
> geostat.c:590:28: warning: assignment makes pointer from
> integer without
> a cast [enabled by default]
> GM_Inv = G_matrix_inverse(GM_sub); //
> invert
> submatrix
> ^
> geostat.c:594:24: warning: assignment makes pointer from
> integer without
> a cast [enabled by default]
> w0 = G_matrix_product(GM_Inv, g0); //
> Vector of
> weights, condition SUM(w) = 1 in last row
> ^
> make: *** [OBJ.x86_64-unknown-linux-gnu/geostat.o] Error 1
> ERROR: Compilation failed, sorry. Please check above error
> messages.
>
>
> mat_struct is defined in include/la.h. I'm not 100% sure, but
> IIUC, you might have to compile GRASS with blas/lapack support for
> this to work.
>
>
> Yes, --with-blas and --with-lapack work for me.
I already had GRASS compiled with both blas and lapack, so that doesn't
seem to help in my case (just tried again, still no luck).
> Anna
>
>
> Moritz
>
>
>
> Moritz
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>
>
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