[GRASS-dev] [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
Agustin Diez Castillo
agustin.diez at uv.es
Fri Jun 3 01:24:30 PDT 2016
Hi,
The 64bit version posted on June, 1 is working in my laptop running El Capitan (10.11.5) and with SIP disabled but the first raster is not displayed in 2D. Curiously enough, changing the display to 3D it will show up.
I’ve no Anaconda installed as far as I can say. However, I do have
libintl.8.dylib, libwx_osx_cocoau-3.0.0.2.0.dylib and others in /usr/local/lib
Agustin
El 2Jun, 2016, a las 11:39 PM, Helena Mitasova <hmitaso at ncsu.edu> escribió:
> Michael, Adam,
>
> I installed the prior 64bit version on a laptop with SID disabled and it seems to run fine, including the 3D visualization.
> Michael, as you mentioned, I had to use arrow keys to select map layers and to select 3D for the first time but it ran
> OK after that. Few known issues related to Python 3 (e.g. histogram) did not work.
>
> Helena
>
>> On Jun 2, 2016, at 4:49 PM, Michael Barton <Michael.Barton at asu.edu> wrote:
>>
>> I’ve had no problem running 3D (in the map display window). Maybe you didn’t get a path set for the wx…gdal… library?
>>
>> Michael
>> ____________________
>> C. Michael Barton
>> Director, Center for Social Dynamics & Complexity
>> Professor of Anthropology, School of Human Evolution & Social Change
>> Head, Graduate Faculty in Complex Adaptive Systems Science
>> Arizona State University
>>
>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>> www: http://www.public.asu.edu/~cmbarton, http://csdc.asu.edu
>>
>>
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>>> On Jun 2, 2016, at 1:34 PM, Adam Dershowitz <adershowitz at exponent.com> wrote:
>>>
>>> I went back to the prior version that I downloaded, where I made the changes to the paths. What I had not noticed before is that I don’t see any way to run nviz. I only see a 2D view. Is that something that should be installed, but it might also be a path issue?
>>> When I do run grass, I also see this: Unable to import pyGRASS: grass_gis.7.3.svn not found. So, that might relate to 3D, or might just be a sign of another part of the path to dynamic library issue.
>>>
>>> -- Adam
>>>
>>>
>>> From: Michael Barton <Michael.Barton at asu.edu>
>>> Date: Thursday, June 2, 2016 at 3:48 PM
>>> To: Adam Dershowitz <adershowitz at exponent.com>
>>> Cc: GRASS developers grass-developers <grass-dev at lists.osgeo.org>, grass-user grass-user <grass-user at lists.osgeo.org>
>>> Subject: Re: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
>>>
>>> Darn!
>>>
>>> It is as I was afraid of. Building with Anaconda wxPython means that the GUI is looking for the Anaconda Python distribution too. So this approach will not work.
>>>
>>> Michael
>>> ____________________
>>> C. Michael Barton
>>> Director, Center for Social Dynamics & Complexity
>>> Professor of Anthropology, School of Human Evolution & Social Change
>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>> Arizona State University
>>>
>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>> www: http://www.public.asu.edu/~cmbarton, http://csdc.asu.edu
>>>
>>>
>>>
>>>
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>>>
>>>> On Jun 2, 2016, at 12:15 PM, Adam Dershowitz <adershowitz at exponent.com> wrote:
>>>>
>>>> I just downloaded the version on the site, and when I run it, I have the same problem. wxPython is looking in the wrong place for shared libraries:
>>>>
>>>> Rebuilding Addon HTML manual pages index...
>>>> Rebuilding Addon menu...
>>>> Python 2.7.10 found.
>>>> Cleaning up temporary files...
>>>> Starting GRASS GIS...
>>>> Traceback (most recent call last):
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/gis_set.py", line 31, in <module>
>>>> from core import globalvar
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/globalvar.py", line 96, in <module>
>>>> import wx
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/__init__.py", line 45, in <module>
>>>> from wx._core import *
>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core.py", line 4, in <module>
>>>> import _core_
>>>> ImportError: dlopen(/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so, 2): Library not loaded: @loader_path/../../../../libwx_osx_cocoau-3.0.0.2.0.dylib
>>>> Referenced from: /Applications/GRASS-7.3.app/Contents/MacOS/etc/python/wx/_core_.so
>>>> Reason: image not found
>>>> ERROR: Error in GUI startup. See messages above (if any) and if necessary, please report this error to the GRASS developers.
>>>> On systems with package manager, make sure you have the right GUI package, probably named grass-gui, installed.
>>>> To run GRASS GIS in text mode use the -text flag.
>>>> Exiting...
>>>> logout
>>>> Saving session...
>>>> ...copying shared history...
>>>> ...saving history...truncating history files...
>>>> ...completed.
>>>>
>>>> [Process completed]
>>>>
>>>>
>>>> -- Adam
>>>>
>>>>
>>>> From: Michael Barton <Michael.Barton at asu.edu>
>>>> Date: Thursday, June 2, 2016 at 2:41 PM
>>>> To: Adam Dershowitz <adershowitz at exponent.com>
>>>> Cc: GRASS developers <grass-dev at lists.osgeo.org>, GRASS users <grass-user at lists.osgeo.org>
>>>> Subject: Re: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
>>>>
>>>> Adam,
>>>>
>>>> I just now uploaded a new binary to the GRASS Mac website. I built wxPython against the Anaconda distribution and Python against system Python. I disabled gettext so that it hopefully will not cause issues. This works on my system, so it's not a total bomb. Now to see if it works without Anaconda Python.
>>>>
>>>> One thing to test is whether v.in.lidar will actually work (64bit LASlib).
>>>>
>>>> Thanks again.
>>>>
>>>> Michael
>>>> ____________________
>>>> C. Michael Barton
>>>> Director, Center for Social Dynamics & Complexity
>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>> Arizona State University
>>>>
>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>> www: http://www.public.asu.edu/~cmbarton, http://csdc.asu.edu
>>>>
>>>>
>>>>
>>>>
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>>>>> On Jun 2, 2016, at 10:56 AM, Adam Dershowitz <adershowitz at exponent.com> wrote:
>>>>>
>>>>> Yes, I’m happy to try it out, once you get it built. Once you do, let me know if there are any specific features that would use specific libraries, so I can test them.
>>>>>
>>>>> -- Adam
>>>>>
>>>>>
>>>>> From: Michael Barton <Michael.Barton at asu.edu>
>>>>> Date: Thursday, June 2, 2016 at 1:53 PM
>>>>> To: Adam Dershowitz <adershowitz at exponent.com>
>>>>> Cc: GRASS developers grass-developers <grass-dev at lists.osgeo.org>, grass-user grass-user <grass-user at lists.osgeo.org>
>>>>> Subject: Re: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
>>>>>
>>>>> Adam,
>>>>>
>>>>> Excellent. I’ll trudge over to the other office and do another version soon. I hope you can try it.
>>>>>
>>>>> There are complications in running install_name_tool during the bundling process. I am working in parallel on a way to do something like that. But in the meantime, a lot of problems could be avoided if I can build GRASS against dependencies that are compiled outside the system folders (/usr/..). I’ve done that with LASlib and it caused you no problems. I’ve been able to build gettext outside of the system area but GRASS can’t find it so far. In this build, I tried packaging the relevant gettext libraries with GRASS, but it still looks for them in /usr/local. I was afraid of that but thought I’d try that. I don’t want to build wxPython from scratch, but can get the right version in the Anaconda package. I will now try to build GRASS against that version. What I don’t know is whether it will then complain if you don’t also have the Anaconda Python 2.7. We’ll see.
>>>>>
>>>>> Michael
>>>>> ____________________
>>>>> C. Michael Barton
>>>>> Director, Center for Social Dynamics & Complexity
>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>> Arizona State University
>>>>>
>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>> www: http://www.public.asu.edu/~cmbarton, http://csdc.asu.edu
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
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>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> On Jun 2, 2016, at 10:12 AM, Adam Dershowitz <adershowitz at exponent.com> wrote:
>>>>>>
>>>>>> I don’t have Anaconda installed.
>>>>>>
>>>>>> An option would be to put the commands that I sent into whatever build script you are using. The changes that are made by install_name_tool can be made to the dozen or so files and then you could package it up to the installer.
>>>>>> The only problems, I have seen and fixed are with the paths to libwx_osx_cocoau-3.0.0.2.0.dylib and libintl.8.dylib
>>>>>>
>>>>>> -- Adam
>>>>>>
>>>>>>
>>>>>> From: Michael Barton <Michael.Barton at asu.edu>
>>>>>> Date: Thursday, June 2, 2016 at 12:17 PM
>>>>>> To: Adam Dershowitz <adershowitz at exponent.com>
>>>>>> Cc: GRASS developers <grass-dev at lists.osgeo.org>, GRASS users <grass-user at lists.osgeo.org>
>>>>>> Subject: Re: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
>>>>>>
>>>>>> Thanks Adam,
>>>>>>
>>>>>> This is disappointing but informative. Do you have the Anaconda Python package installed? I am hoping you do not so I can test another alternative too.
>>>>>>
>>>>>> Michael
>>>>>> ____________________
>>>>>> C. Michael Barton
>>>>>> Director, Center for Social Dynamics & Complexity
>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>> Arizona State University
>>>>>>
>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>>> www: http://www.public.asu.edu/~cmbarton, http://csdc.asu.edu
>>>>>>
>>>>>>
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>>>>>>> On Jun 2, 2016, at 8:19 AM, Adam Dershowitz <adershowitz at exponent.com> wrote:
>>>>>>>
>>>>>>> I used install_name_tool to change the path that the files use to find dynamic libraries. The actual specific command I used are my later emails.
>>>>>>> For example here is one:
>>>>>>> install_name_tool -change /usr/local/lib/libintl.8.dylib /Applications/GRASS-7.3.app/Contents/MacOS/lib/libintl.8.dylib /Applications/GRASS-7.3.app/Contents/MacOS/lib/libgrass_gis.7.3.svn.dylib
>>>>>>>
>>>>>>>
>>>>>>> The issue is that this library: /Applications/GRASS-7.3.app/Contents/MacOS/lib/libgrass_gis.7.3.svn.dylib was trying to dynamically link to this: /usr/local/lib/libintl.8.dylib (which doest exist on my system, but probably does on yours) instead it should have been using this: /Applications/GRASS-7.3.app/Contents/MacOS/lib/libintl.8.dylib (which had been correctly installed on my system by the installer).
>>>>>>>
>>>>>>> Each of the other commands that I sent showed that a number of other libraries were each looking for this: @loader_path/../../../../libwx_osx_cocoau-3.0.0.2.0.dylib when the correct path is this: /Applications/GRASS-7.3.app/Contents/MacOS/lib/libwx_osx_cocoau-3.0.0.2.0.dylib (again, on your machine, both might exist from when you were building).
>>>>>>>
>>>>>>> Each of these paths is hard coded into the binaries at build time, so there is some flag that can generally be used to set them correctly. All I did was changed them using using install_name_tool which is a bit of a kludge.
>>>>>>>
>>>>>>> -- Adam
>>>>>>>
>>>>>>>
>>>>>>> From: Michael Barton <Michael.Barton at asu.edu>
>>>>>>> Date: Thursday, June 2, 2016 at 11:06 AM
>>>>>>> To: Adam Dershowitz <adershowitz at exponent.com>
>>>>>>> Cc: GRASS developers list <grass-dev at lists.osgeo.org>, grass-user grass-user <grass-user at lists.osgeo.org>
>>>>>>> Subject: Re: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
>>>>>>>
>>>>>>> Thanks for the report Adam. When you say you fixed the path, what exactly did you do?
>>>>>>>
>>>>>>> Michael Barton
>>>>>>> School of Human Evolution &Social Change
>>>>>>> Center for Social Dynamics & Complexity
>>>>>>> Arizona State University
>>>>>>>
>>>>>>> ...Sent from my iPad
>>>>>>>
>>>>>>> On Jun 2, 2016, at 6:54 AM, Adam Dershowitz <adershowitz at exponent.com> wrote:
>>>>>>>
>>>>>>>> Looks like you missed a library, or path. I just tried it on 10.11 with SIP enabled, and I get this error:
>>>>>>>>
>>>>>>>> $ '/Applications/GRASS-7.3.app/Contents/MacOS/grass.sh'; exit
>>>>>>>> Rebuilding Addon HTML manual pages index...
>>>>>>>> Rebuilding Addon menu...
>>>>>>>> Python 2.7.10 found.
>>>>>>>> Cleaning up temporary files...
>>>>>>>> Starting GRASS GIS...
>>>>>>>> dyld: Library not loaded: /usr/local/lib/libintl.8.dylib
>>>>>>>> Referenced from: /Applications/GRASS-7.3.app/Contents/MacOS/lib/libgrass_gis.7.3.svn.dylib
>>>>>>>> Reason: image not found
>>>>>>>> Traceback (most recent call last):
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/gis_set.py", line 31, in <module>
>>>>>>>> from core import globalvar
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/globalvar.py", line 29, in <module>
>>>>>>>> from core.debug import Debug
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/debug.py", line 77, in <module>
>>>>>>>> Debug = DebugMsg()
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/debug.py", line 39, in __init__
>>>>>>>> self.SetLevel()
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/gui/wxpython/core/debug.py", line 45, in SetLevel
>>>>>>>> self.debuglevel = int(grass.gisenv().get('WX_DEBUG', 0))
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 953, in gisenv
>>>>>>>> s = read_command("g.gisenv", flags='n')
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 458, in read_command
>>>>>>>> process = pipe_command(*args, **kwargs)
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 433, in pipe_command
>>>>>>>> return start_command(*args, **kwargs)
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 372, in start_command
>>>>>>>> if debug_level() > 0:
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 1536, in debug_level
>>>>>>>> _debug_level = int(gisenv().get('DEBUG', 0))
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 953, in gisenv
>>>>>>>> s = read_command("g.gisenv", flags='n')
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 461, in read_command
>>>>>>>> return handle_errors(returncode, stdout, args, kwargs)
>>>>>>>> File "/Applications/GRASS-7.3.app/Contents/MacOS/etc/python/grass/script/core.py", line 329, in handle_errors
>>>>>>>> returncode=returncode)
>>>>>>>> grass.exceptions.CalledModuleError: Module run None ['g.gisenv', '-n'] ended with error
>>>>>>>> Process ended with non-zero return code -5. See errors in the (error) output.
>>>>>>>> ERROR: Error in GUI startup. See messages above (if any) and if necessary, please report this error to the GRASS developers.
>>>>>>>> On systems with package manager, make sure you have the right GUI package, probably named grass-gui, installed.
>>>>>>>> To run GRASS GIS in text mode use the -text flag.
>>>>>>>> Exiting...
>>>>>>>> logout
>>>>>>>> Saving session...
>>>>>>>> ...copying shared history...
>>>>>>>> ...saving history...truncating history files...
>>>>>>>> ...completed.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> -- Adam
>>>>>>>>
>>>>>>>>
>>>>>>>> From: grass-user <grass-user-bounces at lists.osgeo.org> on behalf of Michael Barton <Michael.Barton at asu.edu>
>>>>>>>> Date: Wednesday, June 1, 2016 at 7:50 PM
>>>>>>>> To: GRASS developers list <grass-dev at lists.osgeo.org>, grass-user grass-user <grass-user at lists.osgeo.org>
>>>>>>>> Subject: [GRASS-user] GRASS for Mac 64bit, wxPython 3, maybe fix for SIP problem - please test
>>>>>>>>
>>>>>>>> I just posted a new binary for GRASS 7.3 built fully 64 bit, with wxPython 3.0.2.0 to the GRASS for Mac site (http://grassmac.wikidot.com)
>>>>>>>>
>>>>>>>> It turns out the previous "64bit" GRASS binary still ran 32bit Python. I had to hack the python_wrapper.py file, but this one is fully 64bit AFAICT. I also tried some hacks that might be a way to solve the inability to run GRASS on El Capitan with SIP enabled. There are a couple of known bugs in the wxPython 3.x GUI
>>>>>>>>
>>>>>>>> 1. The most serious is switching to 3D mode and back to 2D mode leaves one of the map display menu buttons corrupted. It seems the only thing you can do is to close the map display and open a new one.
>>>>>>>>
>>>>>>>> 2. There are also some popup lists (e.g., for switching mapsets) that do not behave as they should. You cannot select an item with a mouse (but you can select with arrow keys and <return>) unless you hit <escape> to destroy part of the control. Then you can use the mouse to click something.
>>>>>>>>
>>>>>>>> Please let us know if you encounter any other bug or strange behavior.
>>>>>>>>
>>>>>>>> Also, and importantly if anyone is running El Capitan, it would be great if you could reenable SIP (if you've turned it off) and see if this version runs. Of course, maybe I've "fixed" it so that it only runs on my system and crashes on everyone else's.
>>>>>>>>
>>>>>>>> Enjoy!
>>>>>>>> Michael
>>>>>>>> ____________________
>>>>>>>> C. Michael Barton
>>>>>>>> Director, Center for Social Dynamics & Complexity
>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change
>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science
>>>>>>>> Arizona State University
>>>>>>>>
>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC)
>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC)
>>>>>>>> www: http://www.public.asu.edu/~cmbarton, http://csdc.asu.edu
>>>>>>>>
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>>>>>
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>>>
>>
>> _______________________________________________
>> grass-dev mailing list
>> grass-dev at lists.osgeo.org
>> http://lists.osgeo.org/mailman/listinfo/grass-dev
>
> Helena Mitasova
> Professor at the Department of Marine,
> Earth, and Atmospheric Sciences
> and Center for Geospatial Analytics
> North Carolina State University
> Raleigh, NC 27695-8208
> hmitaso at ncsu.edu
> http://geospatial.ncsu.edu/osgeorel/publications.html
>
> "All electronic mail messages in connection with State business which are sent to or received by this account are subject to the NC Public Records Law and may be disclosed to third parties.”
>
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