[GRASS-user] Re: announcement of strahler stream order analysis
Margherita Di Leo
diregola at gmail.com
Thu Jul 30 06:01:56 EDT 2009
Hi Jarek, Hi list
I downloaded and compiled the latest version, commented lines 87 and 88
in io.c file
/* G_free(rDirs);*/
/* G_free(rStreams);*/
it does not abort now, but it does not go after this:
GRASS 6.5.svn (spearfish60):~ > r.stream dir=drainage_SFD at user1
stream=stream_SFD at user1 strahler=strahler shreeve=shreeve class=class
Reading maps...
Finding nodes...
Creating springs index...
I tried first in a big region, then in the spearfish. I thought .. can
it be a 64 bit problem? My system is Ubuntu 8.04:
uname -a
Linux marghe 2.6.24-24-generic #1 SMP Fri Jul 24 22:15:50 UTC 2009
x86_64 GNU/Linux
Did anyone try r.stream on a 64 bit architecture?
Any suggestion or hint appreciate
Cheers
margherita
Jarek Jasiewicz wrote:
> thanks,
> Please download and compile newer wersion
> it's look like alocation memory error
> I have some reports that program work but I will try to find potential
> buc
> Jarek
>
> Margherita Di Leo pisze:
>> Hi Jarek,
>> I downloaded and compiled r.stream without problems but i'm afraid it
>> does not work:
>>
>> r.stream dir=drainage at ex_20 stream=basin1 at ex_20 strahler=strahler
>> shreeve=shreve class=class
>>
>> dirs, 3
>> streams, 4
>> Reading maps...
>> *** glibc detected *** r.stream: corrupted double-linked list:
>> 0x000000000067c2c0 ***
>> ======= Backtrace: =========
>> /lib/libc.so.6[0x7f77dfb86322]
>> /lib/libc.so.6(cfree+0x8c)[0x7f77dfb89c1c]
>> r.stream(createMaps+0x353)[0x401df3]
>> r.stream(main+0x1c1)[0x402011]
>> /lib/libc.so.6(__libc_start_main+0xf4)[0x7f77dfb301c4]
>> r.stream[0x401619]
>> ======= Memory map: ========
>> 00400000-00404000 r-xp 00000000 08:03 5955752
>> /usr/local/grass-6.5.svn/bin/r.stream
>> 00603000-00604000 rw-p 00003000 08:03 5955752
>> /usr/local/grass-6.5.svn/bin/r.stream
>> 00604000-41e9f000 rw-p 00604000 00:00 0 [heap]
>> 7f77d8000000-7f77d8021000 rw-p 7f77d8000000 00:00 0
>> 7f77d8021000-7f77dc000000 ---p 7f77d8021000 00:00 0
>> 7f77df700000-7f77df70d000 r-xp 00000000 08:03 4071544 /lib/libgcc_s.so.1
>> 7f77df70d000-7f77df90d000 ---p 0000d000 08:03 4071544 /lib/libgcc_s.so.1
>> 7f77df90d000-7f77df90e000 rw-p 0000d000 08:03 4071544 /lib/libgcc_s.so.1
>> 7f77df90e000-7f77df910000 r-xp 00000000 08:03 6677083 /lib/libdl-2.7.so
>> 7f77df910000-7f77dfb10000 ---p 00002000 08:03 6677083 /lib/libdl-2.7.so
>> 7f77dfb10000-7f77dfb12000 rw-p 00002000 08:03 6677083 /lib/libdl-2.7.so
>> 7f77dfb12000-7f77dfc6a000 r-xp 00000000 08:03 6677080 /lib/libc-2.7.so
>> 7f77dfc6a000-7f77dfe6a000 ---p 00158000 08:03 6677080 /lib/libc-2.7.so
>> 7f77dfe6a000-7f77dfe6d000 r--p 00158000 08:03 6677080 /lib/libc-2.7.so
>> 7f77dfe6d000-7f77dfe6f000 rw-p 0015b000 08:03 6677080 /lib/libc-2.7.so
>> 7f77dfe6f000-7f77dfe74000 rw-p 7f77dfe6f000 00:00 0
>> 7f77dfe74000-7f77dfef4000 r-xp 00000000 08:03 6677084 /lib/libm-2.7.so
>> 7f77dfef4000-7f77e00f3000 ---p 00080000 08:03 6677084 /lib/libm-2.7.so
>> 7f77e00f3000-7f77e00f5000 rw-p 0007f000 08:03 6677084 /lib/libm-2.7.so
>> 7f77e00f5000-7f77e010b000 r-xp 00000000 08:03 6490242
>> /usr/lib/libz.so.1.2.3.3
>> 7f77e010b000-7f77e030b000 ---p 00016000 08:03 6490242
>> /usr/lib/libz.so.1.2.3.3
>> 7f77e030b000-7f77e030c000 rw-p 00016000 08:03 6490242
>> /usr/lib/libz.so.1.2.3.3
>> 7f77e030c000-7f77e0314000 r-xp 00000000 08:03 984193
>> /usr/local/grass-6.5.svn/lib/libgrass_datetime.6.5.svn.so
>> 7f77e0314000-7f77e0513000 ---p 00008000 08:03 984193
>> /usr/local/grass-6.5.svn/lib/libgrass_datetime.6.5.svn.so
>> 7f77e0513000-7f77e0514000 rw-p 00007000 08:03 984193
>> /usr/local/grass-6.5.svn/lib/libgrass_datetime.6.5.svn.so
>> 7f77e0514000-7f77e0567000 r-xp 00000000 08:03 984236
>> /usr/local/grass-6.5.svn/lib/libgrass_gis.6.5.svn.so
>> 7f77e0567000-7f77e0766000 ---p 00053000 08:03 984236
>> /usr/local/grass-6.5.svn/lib/libgrass_gis.6.5.svn.so
>> 7f77e0766000-7f77e0769000 rw-p 00052000 08:03 984236
>> /usr/local/grass-6.5.svn/lib/libgrass_gis.6.5.svn.so
>> 7f77e0769000-7f77e0770000 rw-p 7f77e0769000 00:00 0
>> 7f77e0770000-7f77e078d000 r-xp 00000000 08:03 6676548 /lib/ld-2.7.so
>> 7f77e0926000-7f77e0965000 r--p 00000000 08:03 6521179
>> /usr/lib/locale/en_GB.utf8/LC_CTYPE
>> 7f77e0965000-7f77e0969000 rw-p 7f77e0965000 00:00 0
>> 7f77e0982000-7f77e0983000 r--p 00000000 08:03 6521188
>> /usr/lib/locale/en_GB.utf8/LC_MESSAGES/SYS_LC_MESSAGES
>> 7f77e0983000-7f77e098a000 r--s 00000000 08:03 6496774
>> /usr/lib/gconv/gconv-modules.cache
>> 7f77e098a000-7f77e098d000 rw-p 7f77e098a000 00:00 0
>> 7f77e098d000-7f77e098f000 rw-p 0001d000 08:03 6676548 /lib/ld-2.7.so
>> 7fffe8979000-7fffe898e000 rw-p 7ffffffea000 00:00 0 [stack]
>> 7fffe89fe000-7fffe8a00000 r-xp 7fffe89fe000 00:00 0 [vdso]
>> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
>> Aborted
>>
>>
>>>>> Hi list!
>>>>>
>>>>> I just finish first version of new grass module r.stream. Module
>>>>> is regular
>>>>> Grass module, written in C an has no addational dependencies. It was
>>>>> compiled with GRASS65 devel downloaded in last two week. Source
>>>>> code you
>>>>> can find here:
>>>>>
>>>>> http://heretic.livenet.pl/heretic/r.stream.tar.gz
>>>>>
>>>>> Module compiles and seems to work. Analysis was tested only on one
>>>>> dataset.
>>>>>
>>>>> To compile it copy r.streams directory to your grassXX../raster/ cd
>>>>> r.stream run make and make install
>>>>>
>>>>> What module calculate:
>>>>> - strahler stream order
>>>>> - shreeve stream magnitude
>>>>> - class of topological elements of drainage networks
>>>>>
>>>>> Module use r.watershed outputs: SDF flow direction and SDF stream
>>>>> network.
>>>>>
>>>>>
>>>>> Analysis of r.stream shall be run on same regions setings as
>>>>> r.watershed. If
>>>>> no, run g.region rast=your_dir_file first. For now module do not
>>>>> check if
>>>>> region and rasters are identical. It is planned to add in nearest
>>>>> feature.
>>>>> It also do not check if dirs and streams are SDF result. Threre
>>>>> are no
>>>>> addational description. It will be added after testing.
>>>>>
>>>>> It works only on cells data. Floating points data are not allowed
>>>>> (and have
>>>>> no sense).
>>>>>
>>>>> Module is quite fast. 3000 x3000 cells all three analysis runs no
>>>>> more than
>>>>> 30 s. on AMD 3800 2GB, Ubuntu 8.04
>>>>>
>>>>> Module is part of comprehensive project which will add full Horton
>>>>> analysis
>>>>> and some addational terrrains analysis to Grass. More details in the
>>>>> feature. Any cooperation is welcome. The next module I plan is
>>>>> directional
>>>>> vectorisation of stream network.
>>>>>
>>>>> For now module is available only form web address pointed below.
>>>>> After
>>>>> testing and removing critical errors it will be added to grass
>>>>> add-ons (or
>>>>> maybe to main branch?).
>>>>>
>>>>> Any coments, improvements and critics is very welcome.
>>>>>
>>>>> More advanced Grass developers: Please check my code. Its funny,
>>>>> but I don't
>>>>> know C.
>>>>> General code is based on GRASS r.topindex module (by Keith Beven
>>>>> and Huidae
>>>>> Cho, strongly modified)
>>>>> Strahler stream order algorithm from Saga GIS (by Victor Olaya,
>>>>> modified)
>>>>> Shreeve stream magnitude and class of topological network are my
>>>>> own ideas
>>>>>
>>>>> Test and enjoy.
>>>>>
>>>>> Jarek Jasiewicz
>>>>> Adam Mickiewicz University, Poznan
>>>>> Geoecology and Geoinformation Institute
>>>>> _______________________________________________
>>>>> grass-user mailing list
>>>>> grass-user at lists.osgeo.org
>>>>> http://lists.osgeo.org/mailman/listinfo/grass-user
>>>>>
>>>>>
>>
>
--
Eng. Margherita Di Leo
Ph.D. Student
Methods and Technologies for Environmental Monitoring
Department of Environmental Engineering and Physics (DIFA)
University of Basilicata
Campus Macchia Romana
85100 - Potenza
Italy
Office: +39-0971205363
Fax: +39-0971205160
E-mail: dileomargherita AT gmail DOT com
Skype: dileomargherita
URL: http://www.difa.unibas.it/A_Manager_PP.do?azione=visualizzaHomePage&id=106
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