[GRASS-user] Re: announcement of strahler stream order analysis
Jarek Jasiewicz
jarekj at amu.edu.pl
Thu Jul 30 08:11:45 EDT 2009
How much RAM you have?
try to calculate ony one output map
if p[rogram do not responce after 3 munutes brak it.
Jarek
Margherita Di Leo pisze:
> Hi Jarek, Hi list
>
> I downloaded and compiled the latest version, commented lines 87 and
> 88 in io.c file
>
> /* G_free(rDirs);*/
> /* G_free(rStreams);*/
>
> it does not abort now, but it does not go after this:
>
> GRASS 6.5.svn (spearfish60):~ > r.stream dir=drainage_SFD at user1
> stream=stream_SFD at user1 strahler=strahler shreeve=shreeve class=class
> Reading maps...
> Finding nodes...
> Creating springs index...
>
> I tried first in a big region, then in the spearfish. I thought .. can
> it be a 64 bit problem? My system is Ubuntu 8.04:
>
> uname -a
> Linux marghe 2.6.24-24-generic #1 SMP Fri Jul 24 22:15:50 UTC 2009
> x86_64 GNU/Linux
>
> Did anyone try r.stream on a 64 bit architecture?
>
> Any suggestion or hint appreciate
>
> Cheers
>
> margherita
>
>
>
>
>
> Jarek Jasiewicz wrote:
>> thanks,
>> Please download and compile newer wersion
>> it's look like alocation memory error
>> I have some reports that program work but I will try to find
>> potential buc
>> Jarek
>>
>> Margherita Di Leo pisze:
>>> Hi Jarek,
>>> I downloaded and compiled r.stream without problems but i'm afraid
>>> it does not work:
>>>
>>> r.stream dir=drainage at ex_20 stream=basin1 at ex_20 strahler=strahler
>>> shreeve=shreve class=class
>>>
>>> dirs, 3
>>> streams, 4
>>> Reading maps...
>>> *** glibc detected *** r.stream: corrupted double-linked list:
>>> 0x000000000067c2c0 ***
>>> ======= Backtrace: =========
>>> /lib/libc.so.6[0x7f77dfb86322]
>>> /lib/libc.so.6(cfree+0x8c)[0x7f77dfb89c1c]
>>> r.stream(createMaps+0x353)[0x401df3]
>>> r.stream(main+0x1c1)[0x402011]
>>> /lib/libc.so.6(__libc_start_main+0xf4)[0x7f77dfb301c4]
>>> r.stream[0x401619]
>>> ======= Memory map: ========
>>> 00400000-00404000 r-xp 00000000 08:03 5955752
>>> /usr/local/grass-6.5.svn/bin/r.stream
>>> 00603000-00604000 rw-p 00003000 08:03 5955752
>>> /usr/local/grass-6.5.svn/bin/r.stream
>>> 00604000-41e9f000 rw-p 00604000 00:00 0 [heap]
>>> 7f77d8000000-7f77d8021000 rw-p 7f77d8000000 00:00 0
>>> 7f77d8021000-7f77dc000000 ---p 7f77d8021000 00:00 0
>>> 7f77df700000-7f77df70d000 r-xp 00000000 08:03 4071544
>>> /lib/libgcc_s.so.1
>>> 7f77df70d000-7f77df90d000 ---p 0000d000 08:03 4071544
>>> /lib/libgcc_s.so.1
>>> 7f77df90d000-7f77df90e000 rw-p 0000d000 08:03 4071544
>>> /lib/libgcc_s.so.1
>>> 7f77df90e000-7f77df910000 r-xp 00000000 08:03 6677083 /lib/libdl-2.7.so
>>> 7f77df910000-7f77dfb10000 ---p 00002000 08:03 6677083 /lib/libdl-2.7.so
>>> 7f77dfb10000-7f77dfb12000 rw-p 00002000 08:03 6677083 /lib/libdl-2.7.so
>>> 7f77dfb12000-7f77dfc6a000 r-xp 00000000 08:03 6677080 /lib/libc-2.7.so
>>> 7f77dfc6a000-7f77dfe6a000 ---p 00158000 08:03 6677080 /lib/libc-2.7.so
>>> 7f77dfe6a000-7f77dfe6d000 r--p 00158000 08:03 6677080 /lib/libc-2.7.so
>>> 7f77dfe6d000-7f77dfe6f000 rw-p 0015b000 08:03 6677080 /lib/libc-2.7.so
>>> 7f77dfe6f000-7f77dfe74000 rw-p 7f77dfe6f000 00:00 0
>>> 7f77dfe74000-7f77dfef4000 r-xp 00000000 08:03 6677084 /lib/libm-2.7.so
>>> 7f77dfef4000-7f77e00f3000 ---p 00080000 08:03 6677084 /lib/libm-2.7.so
>>> 7f77e00f3000-7f77e00f5000 rw-p 0007f000 08:03 6677084 /lib/libm-2.7.so
>>> 7f77e00f5000-7f77e010b000 r-xp 00000000 08:03 6490242
>>> /usr/lib/libz.so.1.2.3.3
>>> 7f77e010b000-7f77e030b000 ---p 00016000 08:03 6490242
>>> /usr/lib/libz.so.1.2.3.3
>>> 7f77e030b000-7f77e030c000 rw-p 00016000 08:03 6490242
>>> /usr/lib/libz.so.1.2.3.3
>>> 7f77e030c000-7f77e0314000 r-xp 00000000 08:03 984193
>>> /usr/local/grass-6.5.svn/lib/libgrass_datetime.6.5.svn.so
>>> 7f77e0314000-7f77e0513000 ---p 00008000 08:03 984193
>>> /usr/local/grass-6.5.svn/lib/libgrass_datetime.6.5.svn.so
>>> 7f77e0513000-7f77e0514000 rw-p 00007000 08:03 984193
>>> /usr/local/grass-6.5.svn/lib/libgrass_datetime.6.5.svn.so
>>> 7f77e0514000-7f77e0567000 r-xp 00000000 08:03 984236
>>> /usr/local/grass-6.5.svn/lib/libgrass_gis.6.5.svn.so
>>> 7f77e0567000-7f77e0766000 ---p 00053000 08:03 984236
>>> /usr/local/grass-6.5.svn/lib/libgrass_gis.6.5.svn.so
>>> 7f77e0766000-7f77e0769000 rw-p 00052000 08:03 984236
>>> /usr/local/grass-6.5.svn/lib/libgrass_gis.6.5.svn.so
>>> 7f77e0769000-7f77e0770000 rw-p 7f77e0769000 00:00 0
>>> 7f77e0770000-7f77e078d000 r-xp 00000000 08:03 6676548 /lib/ld-2.7.so
>>> 7f77e0926000-7f77e0965000 r--p 00000000 08:03 6521179
>>> /usr/lib/locale/en_GB.utf8/LC_CTYPE
>>> 7f77e0965000-7f77e0969000 rw-p 7f77e0965000 00:00 0
>>> 7f77e0982000-7f77e0983000 r--p 00000000 08:03 6521188
>>> /usr/lib/locale/en_GB.utf8/LC_MESSAGES/SYS_LC_MESSAGES
>>> 7f77e0983000-7f77e098a000 r--s 00000000 08:03 6496774
>>> /usr/lib/gconv/gconv-modules.cache
>>> 7f77e098a000-7f77e098d000 rw-p 7f77e098a000 00:00 0
>>> 7f77e098d000-7f77e098f000 rw-p 0001d000 08:03 6676548 /lib/ld-2.7.so
>>> 7fffe8979000-7fffe898e000 rw-p 7ffffffea000 00:00 0 [stack]
>>> 7fffe89fe000-7fffe8a00000 r-xp 7fffe89fe000 00:00 0 [vdso]
>>> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
>>> Aborted
>>>
>>>
>>>>>> Hi list!
>>>>>>
>>>>>> I just finish first version of new grass module r.stream. Module
>>>>>> is regular
>>>>>> Grass module, written in C an has no addational dependencies. It was
>>>>>> compiled with GRASS65 devel downloaded in last two week. Source
>>>>>> code you
>>>>>> can find here:
>>>>>>
>>>>>> http://heretic.livenet.pl/heretic/r.stream.tar.gz
>>>>>>
>>>>>> Module compiles and seems to work. Analysis was tested only on
>>>>>> one dataset.
>>>>>>
>>>>>> To compile it copy r.streams directory to your grassXX../raster/ cd
>>>>>> r.stream run make and make install
>>>>>>
>>>>>> What module calculate:
>>>>>> - strahler stream order
>>>>>> - shreeve stream magnitude
>>>>>> - class of topological elements of drainage networks
>>>>>>
>>>>>> Module use r.watershed outputs: SDF flow direction and SDF stream
>>>>>> network.
>>>>>>
>>>>>>
>>>>>> Analysis of r.stream shall be run on same regions setings as
>>>>>> r.watershed. If
>>>>>> no, run g.region rast=your_dir_file first. For now module do not
>>>>>> check if
>>>>>> region and rasters are identical. It is planned to add in nearest
>>>>>> feature.
>>>>>> It also do not check if dirs and streams are SDF result. Threre
>>>>>> are no
>>>>>> addational description. It will be added after testing.
>>>>>>
>>>>>> It works only on cells data. Floating points data are not allowed
>>>>>> (and have
>>>>>> no sense).
>>>>>>
>>>>>> Module is quite fast. 3000 x3000 cells all three analysis runs no
>>>>>> more than
>>>>>> 30 s. on AMD 3800 2GB, Ubuntu 8.04
>>>>>>
>>>>>> Module is part of comprehensive project which will add full
>>>>>> Horton analysis
>>>>>> and some addational terrrains analysis to Grass. More details in the
>>>>>> feature. Any cooperation is welcome. The next module I plan is
>>>>>> directional
>>>>>> vectorisation of stream network.
>>>>>>
>>>>>> For now module is available only form web address pointed below.
>>>>>> After
>>>>>> testing and removing critical errors it will be added to grass
>>>>>> add-ons (or
>>>>>> maybe to main branch?).
>>>>>>
>>>>>> Any coments, improvements and critics is very welcome.
>>>>>>
>>>>>> More advanced Grass developers: Please check my code. Its funny,
>>>>>> but I don't
>>>>>> know C.
>>>>>> General code is based on GRASS r.topindex module (by Keith Beven
>>>>>> and Huidae
>>>>>> Cho, strongly modified)
>>>>>> Strahler stream order algorithm from Saga GIS (by Victor Olaya,
>>>>>> modified)
>>>>>> Shreeve stream magnitude and class of topological network are my
>>>>>> own ideas
>>>>>>
>>>>>> Test and enjoy.
>>>>>>
>>>>>> Jarek Jasiewicz
>>>>>> Adam Mickiewicz University, Poznan
>>>>>> Geoecology and Geoinformation Institute
>>>>>> _______________________________________________
>>>>>> grass-user mailing list
>>>>>> grass-user at lists.osgeo.org
>>>>>> http://lists.osgeo.org/mailman/listinfo/grass-user
>>>>>>
>>>>>>
>>>
>>
>
>
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