[GRASS-user] troubles installing r.fuzzy.system add-on on Mac OSX (GRASS 6.4.1)

Tue Aug 16 12:08:01 EDT 2011

Hi GRASS gurus,

I've been trying to install the r.fuzzy.system add-on to my GRASS' local copy (Mac OSX 10.6.8, binary installed from: http://www.kyngchaos.com/software/grass - thanks for the installer btw!).

Unfortunately I had no luck with compiling and installing the add-on yet.
I've tried 2 approaches:
* the g.extension add-on manager
* and brutal force (svn co + make)
See details below.

In the GUI, using the add-on extension manager, I get the following errors:

g.extension extension=r.fuzzy.system svnurl=https://svn.osgeo.org/grass/grass-addons
Fetching <r.fuzzy.system> from GRASS-Addons SVN (be patient)...
A    r.fuzzy.system/flood.map
A    r.fuzzy.system/helpers.c
A    r.fuzzy.system/local_proto.h
A    r.fuzzy.system/flood.rul
A    r.fuzzy.system/rule_parser.c
A    r.fuzzy.system/main.c
A    r.fuzzy.system/system.c
A    r.fuzzy.system/description.html
A    r.fuzzy.system/f_result.png
A    r.fuzzy.system/fuzzylogic.c
A    r.fuzzy.system/io.c
A    r.fuzzy.system/map_parser.c
A    r.fuzzy.system/Makefile
 U   r.fuzzy.system
Checked out revision 47679.
Compiling <r.fuzzy.system>...
mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include/grass
mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/bin
mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/etc
mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/driver
mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/driver/db
mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/fonts
test -d OBJ.i386-apple-darwin10.7.0 || mkdir -p OBJ.i386-apple-darwin10.7.0
gcc -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include -o OBJ.i386-apple-darwin10.7.0/fuzzylogic.o -c fuzzylogic.c
gcc -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include -o OBJ.i386-apple-darwin10.7.0/helpers.o -c helpers.c
gcc -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include -o OBJ.i386-apple-darwin10.7.0/io.o -c io.c
gcc -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include -o OBJ.i386-apple-darwin10.7.0/main.o -c main.c
gcc -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include -o OBJ.i386-apple-darwin10.7.0/map_parser.o -c map_parser.c
map_parser.c: In function ‚Äòparse_map_file‚Äô:
map_parser.c:43: warning: unknown conversion type character
‚Äò>‚Äô in format
map_parser.c: In function ‚Äòparse_map_file‚Äô:
map_parser.c:43: warning: unknown conversion type character
‚Äò>‚Äô in format
gcc -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include -o OBJ.i386-apple-darwin10.7.0/rule_parser.o -c rule_parser.c
gcc -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Applications/GRASS-6.4.app/Contents/MacOS/include -I/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/include -o OBJ.i386-apple-darwin10.7.0/system.o -c system.c
ld: warning: directory '/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/lib' following -L not found
ld: warning: directory '/usr/local/pgsql-9.0/lib' following -L not found
ld: warning: directory '/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/lib' following -L not found
ld: warning: directory '/usr/local/pgsql-9.0/lib' following -L not found
gcc -L/Applications/GRASS-6.4.app/Contents/MacOS/lib -L/Applications/GRASS-6.4.app/Contents/MacOS/lib -L/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/lib -arch i386 -arch x86_64   -arch i386 -arch x86_64  -L/usr/local/pgsql-9.0/lib   -o /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/bin/r.fuzzy.system OBJ.i386-apple-darwin10.7.0/fuzzylogic.o OBJ.i386-apple-darwin10.7.0/helpers.o OBJ.i386-apple-darwin10.7.0/io.o OBJ.i386-apple-darwin10.7.0/main.o OBJ.i386-apple-darwin10.7.0/map_parser.o OBJ.i386-apple-darwin10.7.0/rule_parser.o OBJ.i386-apple-darwin10.7.0/system.o  -lgrass_rowio -lgrass_gis -lgrass_datetime -lz      -lz
make htmlcmd
make /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/docs/html/r.fuzzy.system.html HTMLSRC=/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/bin/r.fuzzy.system
if [ "/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/bin/r.fuzzy.system" != "" ] ; then GISRC=/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/demolocation/.grassrc64 GISBASE=/Users/Shared/src/GRASS/grass-6.4.1-snow/dist.i386-apple-darwin10.7.0 PATH="/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/bin:$PATH" DYLD_LIBRARY_PATH="/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/bin:/Applications/GRASS-6.4.app/Contents/MacOS/lib:/Applications/GRASS-6.4.app/Contents/MacOS/lib:/Users/duc025/Library/GRASS/6.4/Modules/lib:/Library/GRASS/6.4/Modules/lib:/Applications/ImageMagick-6.6.3/lib" LC_ALL=C /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/bin/r.fuzzy.system --html-description < /dev/null | grep -v '</body>\|</html>' > r.fuzzy.system.tmp.html ; true ; fi
/Applications/GRASS-6.4.app/Contents/MacOS/tools/mkhtml.sh r.fuzzy.system ; mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/docs/html ; /usr/bin/install -c  -m 644 r.fuzzy.system.tmp.html /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/docs/html/r.fuzzy.system.html ; for file in  *.png *.jpg ; do head -n 1 $file | grep '^#!' > /dev/null ; if [ $? -ne 0 ] ; then /usr/bin/install -c  -m 644 $file /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/docs/html ; fi done 2> /dev/null ; true
make mancmd
make /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/man/man1/r.fuzzy.system.1 MANSRC=/Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/docs/html/r.fuzzy.system.html
ERROR: G_getenv(): Variable LOCATION_NAME not set
Installing <r.fuzzy.system>...
You need to enter the root password next to install r.fuzzy.system:
su: illegal option -- c
usage: su [-] [-flm] [login [args]]
mkdir -p /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/man/man1
GRASS_PERL=/usr/bin/perl VERSION_NUMBER=6.4.1 sh /Applications/GRASS-6.4.app/Contents/MacOS/tools/g.html2man/g.html2man /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/docs/html/r.fuzzy.system.html /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/man/man1/r.fuzzy.system.1 1
Converting: /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/docs/html/r.fuzzy.system.html to /Users/duc025/grass/newLocation/PERMANENT/.tmp/mac.local/44775.0/dist/man/man1/r.fuzzy.system.1
ERROR: Installation failed, sorry. Please check above error messages.

Then, in a terminal, after checking out the source files for the r.fuzzy.system add-on from svn, got the following errors:

GRASS 6.4.1 (newLocation):~/grass/fuzzySystem/r.fuzzy.system > make MODULE_TOPDIR=/Applications/GRASS-6.4.app/Contents/MacOS/
test -d OBJ.i386-apple-darwin10.7.0 || mkdir -p OBJ.i386-apple-darwin10.7.0
gcc -I/Users/Shared/src/GRASS/grass-6.4.1-snow/dist.i386-apple-darwin10.7.0/include  -Os -fexceptions   -arch i386 -arch x86_64      -DPACKAGE=\""grassmods"\"  -I/Users/Shared/src/GRASS/grass-6.4.1-snow/dist.i386-apple-darwin10.7.0/include -o OBJ.i386-apple-darwin10.7.0/fuzzylogic.o -c fuzzylogic.c
In file included from fuzzylogic.c:1:
local_proto.h:5:23: error: grass/gis.h: No such file or directory
local_proto.h:6:27: error: grass/glocale.h: No such file or directory
In file included from fuzzylogic.c:1:
local_proto.h:106: error: expected specifier-qualifier-list before ‘RASTER_MAP_TYPE’
local_proto.h:116: error: expected specifier-qualifier-list before ‘DCELL’
local_proto.h:136: error: expected specifier-qualifier-list before ‘FCELL’
local_proto.h:185: error: expected ‘)’ before ‘cell’
fuzzylogic.c:3: error: expected ‘)’ before ‘cell’
In file included from fuzzylogic.c:1:
local_proto.h:5:23: error: grass/gis.h: No such file or directory
local_proto.h:6:27: error: grass/glocale.h: No such file or directory
In file included from fuzzylogic.c:1:
local_proto.h:106: error: expected specifier-qualifier-list before ‘RASTER_MAP_TYPE’
local_proto.h:116: error: expected specifier-qualifier-list before ‘DCELL’
local_proto.h:136: error: expected specifier-qualifier-list before ‘FCELL’
local_proto.h:185: error: expected ‘)’ before ‘cell’
fuzzylogic.c:3: error: expected ‘)’ before ‘cell’
lipo: can't figure out the architecture type of: /var/folders/F1/F1w0tzFYEbiJcYgLf9+Mh++++TI/-Tmp-//cchVfFcE.out
make: *** [OBJ.i386-apple-darwin10.7.0/fuzzylogic.o] Error 1

I found a few posts that seem to highlight similar issues on various architectures: http://trac.osgeo.org/grass/ticket/620, http://comments.gmane.org/gmane.comp.gis.grass.user/39745
But I didn't find the solution.

Hopefully someone will be able to help me here... I'm kind of stuck!

Cheers

Guillaume

Dr Guillaume Duclaux

Research Scientist
CSIRO Earth Science and Resource Engineering

Phone: +61 8 6436 8728  | Fax: +61 8 6436 8559  | Mobile:  +61 459 835 992

guillaume.duclaux at csiro.au<mailto:guillaume.duclaux at csiro.au> | www.csiro.au<http://www.csiro.au/> |
Address: Australian Resources Research Centre, 26 Dick Perry Avenue, Kensington WA 6151

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