[GRASS-user] problem to install grass70 on ubuntu 12.04 and dependencies for kriging
Alex Mandel
tech_dev at wildintellect.com
Thu Aug 28 08:55:16 PDT 2014
You need to install libgeos-dev, libproj-dev etc and build-essential.
Installation of R packages on Linux often requires compiling so you need
all the source headers and compilers for it to work.
-Alex
On 08/28/2014 02:57 AM, John Nicholls wrote:
> Hi
> Thanks for the help to get Grass7 running on my laptop.
> I followed the workaround "sudo apt-get install grass70-core
> grass70-gui" and now have grass70 running on Ubuntu 14.04 LTS:
>
> I am trying to use the v.krige command in Grass7, and when doing so
> receive the following:
>
> Loading dependencies, please wait...
> Checking rgeos availability: FALSE
> Note: when rgeos is not available, polygon geometry
> computations in maptools depend on gpclib,
> which has a restricted licence. It is disabled by default;
> to enable gpclib, type gpclibPermit()
> ERROR: R package(s) rgeos, gstat, spgrass6 missing. Install it/them and
> re-run v.krige.
>
> I've installed python-rpy2.2.3.9-1 via the Ubuntu package manager, and
> enabled gpclib.
>
> Following the instructions in
> http://grass.osgeo.org/grass65/manuals/v.krige.py.html I've typed in
> install.packages("rgeos", dep=T)
> install.packages("gstat", dep=T)
> install.packages("spgrass6", dep=T)
> install.packages("automap", dep=T)
>
> Unfortunately I'm getting errors in the installation of "rgeos",
> "gstat", "spgrass6", and "automap", which are detailed below. Does
> anyone know where I might be going wrong. The version of R installed on
> my laptop is R version 3.0.2 (2013-09-25) -- "Frisbee Sailing", and I
> have a version of RKward also installed.
>
> I am neither a Grass nor R expert, needless to say....
>
> install.packages("rgeos", dep=T)
> Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> (as ‘lib’ is unspecified)
> also installing the dependency ‘XML’
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
> Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/rgeos_0.3-6.tar.gz'
> Content type 'application/x-gzip' length 240510 bytes (234 Kb)
> opened URL
> ==================================================
> downloaded 234 Kb
>
> * installing *source* package ‘XML’ ...
> ** package ‘XML’ successfully unpacked and MD5 sums checked
> checking for gcc... gcc
> checking for C compiler default output file name... rm: cannot remove
> 'a.out.dSYM': Is a directory
> a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -E
> checking for sed... /bin/sed
> checking for pkg-config... /usr/bin/pkg-config
> checking for xml2-config... no
> Cannot find xml2-config
> ERROR: configuration failed for package ‘XML’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
> * installing *source* package ‘rgeos’ ...
> ** package ‘rgeos’ successfully unpacked and MD5 sums checked
> configure: CC: gcc -std=gnu99
> configure: CXX: g++
> configure: rgeos: 0.3-4
> checking for /usr/bin/svnversion... no
> configure: svn revision: 450
> checking geos-config usability... ./configure: line 2056: geos-config:
> command not found
> no
> configure: error: geos-config not usable
> ERROR: configuration failed for package ‘rgeos’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgeos’
>
> The downloaded source packages are in
> ‘/tmp/RtmpRYggF0/downloaded_packages’
> Warning messages:
> 1: In install.packages("rgeos", dep = T) :
> installation of package ‘XML’ had non-zero exit status
> 2: In install.packages("rgeos", dep = T) :
> installation of package ‘rgeos’ had non-zero exit status
>
>> install.packages("gstat", dep=T)
> Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> (as ‘lib’ is unspecified)
> also installing the dependencies ‘spacetime’, ‘rgdal’, ‘rgeos’
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/spacetime_1.1-1.tar.gz'
> Content type 'application/x-gzip' length 2269252 bytes (2.2 Mb)
> opened URL
> ==================================================
> downloaded 2.2 Mb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
> Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/rgeos_0.3-6.tar.gz'
> Content type 'application/x-gzip' length 240510 bytes (234 Kb)
> opened URL
> ==================================================
> downloaded 234 Kb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/gstat_1.0-19.tar.gz'
> Content type 'application/x-gzip' length 2045717 bytes (2.0 Mb)
> opened URL
> ==================================================
> downloaded 2.0 Mb
>
> * installing *source* package ‘rgdal’ ...
> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> configure: CC: gcc -std=gnu99
> configure: CXX: g++
> configure: rgdal: 0.8-15
> checking for /usr/bin/svnversion... no
> configure: svn revision: 498
> configure: gdal-config: gdal-config
> checking gdal-config usability... ./configure: line 2119: gdal-config:
> command not found
> no
> Error: gdal-config not found
> The gdal-config script distributed with GDAL could not be found.
> If you have not installed the GDAL libraries, you can
> download the source from http://www.gdal.org/
> If you have installed the GDAL libraries, then make sure that
> gdal-config is in your path. Try typing gdal-config at a
> shell prompt and see if it runs. If not, use:
> --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
> with appropriate values for your installation.
>
> ERROR: configuration failed for package ‘rgdal’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
> * installing *source* package ‘rgeos’ ...
> ** package ‘rgeos’ successfully unpacked and MD5 sums checked
> configure: CC: gcc -std=gnu99
> configure: CXX: g++
> configure: rgeos: 0.3-4
> checking for /usr/bin/svnversion... no
> configure: svn revision: 450
> checking geos-config usability... ./configure: line 2056: geos-config:
> command not found
> no
> configure: error: geos-config not usable
> ERROR: configuration failed for package ‘rgeos’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgeos’
> ERROR: dependency ‘rgeos’ is not available for package ‘spacetime’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spacetime’
> ERROR: dependency ‘spacetime’ is not available for package ‘gstat’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/gstat’
>
> The downloaded source packages are in
> ‘/tmp/RtmpRYggF0/downloaded_packages’
> Warning messages:
> 1: In install.packages("gstat", dep = T) :
> installation of package ‘rgdal’ had non-zero exit status
> 2: In install.packages("gstat", dep = T) :
> installation of package ‘rgeos’ had non-zero exit status
> 3: In install.packages("gstat", dep = T) :
> installation of package ‘spacetime’ had non-zero exit status
> 4: In install.packages("gstat", dep = T) :
> installation of package ‘gstat’ had non-zero exit status
>> install.packages("spgrass6", dep=T)
> Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> (as ‘lib’ is unspecified)
> also installing the dependencies ‘XML’, ‘rgdal’
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
> Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
> Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/spgrass6_0.8-3.tar.gz'
> Content type 'application/x-gzip' length 274678 bytes (268 Kb)
> opened URL
> ==================================================
> downloaded 268 Kb
>
> * installing *source* package ‘XML’ ...
> ** package ‘XML’ successfully unpacked and MD5 sums checked
> checking for gcc... gcc
> checking for C compiler default output file name... rm: cannot remove
> 'a.out.dSYM': Is a directory
> a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -E
> checking for sed... /bin/sed
> checking for pkg-config... /usr/bin/pkg-config
> checking for xml2-config... no
> Cannot find xml2-config
> ERROR: configuration failed for package ‘XML’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
> * installing *source* package ‘rgdal’ ...
> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> configure: CC: gcc -std=gnu99
> configure: CXX: g++
> configure: rgdal: 0.8-15
> checking for /usr/bin/svnversion... no
> configure: svn revision: 498
> configure: gdal-config: gdal-config
> checking gdal-config usability... ./configure: line 2119: gdal-config:
> command not found
> no
> Error: gdal-config not found
> The gdal-config script distributed with GDAL could not be found.
> If you have not installed the GDAL libraries, you can
> download the source from http://www.gdal.org/
> If you have installed the GDAL libraries, then make sure that
> gdal-config is in your path. Try typing gdal-config at a
> shell prompt and see if it runs. If not, use:
> --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
> with appropriate values for your installation.
>
> ERROR: configuration failed for package ‘rgdal’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
> ERROR: dependency ‘XML’ is not available for package ‘spgrass6’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spgrass6’
>
> The downloaded source packages are in
> ‘/tmp/RtmpRYggF0/downloaded_packages’
> Warning messages:
> 1: In install.packages("spgrass6", dep = T) :
> installation of package ‘XML’ had non-zero exit status
> 2: In install.packages("spgrass6", dep = T) :
> installation of package ‘rgdal’ had non-zero exit status
> 3: In install.packages("spgrass6", dep = T) :
> installation of package ‘spgrass6’ had non-zero exit status
>
>> install.packages("spgrass6", dep=T)
> Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> (as ‘lib’ is unspecified)
> also installing the dependencies ‘XML’, ‘rgdal’
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
> Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
> Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
> opened URL
> ==================================================
> downloaded 1.5 Mb
>
> trying URL
> 'http://www.freestatistics.org/cran/src/contrib/spgrass6_0.8-3.tar.gz'
> Content type 'application/x-gzip' length 274678 bytes (268 Kb)
> opened URL
> ==================================================
> downloaded 268 Kb
>
> * installing *source* package ‘XML’ ...
> ** package ‘XML’ successfully unpacked and MD5 sums checked
> checking for gcc... gcc
> checking for C compiler default output file name... rm: cannot remove
> 'a.out.dSYM': Is a directory
> a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -E
> checking for sed... /bin/sed
> checking for pkg-config... /usr/bin/pkg-config
> checking for xml2-config... no
> Cannot find xml2-config
> ERROR: configuration failed for package ‘XML’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
> * installing *source* package ‘rgdal’ ...
> ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> configure: CC: gcc -std=gnu99
> configure: CXX: g++
> configure: rgdal: 0.8-15
> checking for /usr/bin/svnversion... no
> configure: svn revision: 498
> configure: gdal-config: gdal-config
> checking gdal-config usability... ./configure: line 2119: gdal-config:
> command not found
> no
> Error: gdal-config not found
> The gdal-config script distributed with GDAL could not be found.
> If you have not installed the GDAL libraries, you can
> download the source from http://www.gdal.org/
> If you have installed the GDAL libraries, then make sure that
> gdal-config is in your path. Try typing gdal-config at a
> shell prompt and see if it runs. If not, use:
> --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
> with appropriate values for your installation.
>
> ERROR: configuration failed for package ‘rgdal’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
> ERROR: dependency ‘XML’ is not available for package ‘spgrass6’
> * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spgrass6’
>
> The downloaded source packages are in
> ‘/tmp/RtmpRYggF0/downloaded_packages’
> Warning messages:
> 1: In install.packages("spgrass6", dep = T) :
> installation of package ‘XML’ had non-zero exit status
> 2: In install.packages("spgrass6", dep = T) :
> installation of package ‘rgdal’ had non-zero exit status
> 3: In install.packages("spgrass6", dep = T) :
> installation of package ‘spgrass6’ had non-zero exit status
>
> On Wed, Aug 27, 2014, at 10:10 PM, Markus Neteler wrote:
>> On Wed, Aug 27, 2014 at 9:08 PM, César Augusto Ramírez Franco
>> <caesarivs at gmail.com> wrote:
>>> I don't know why, but there appears to be a conflict between grass70 and
>>> grass70-core packages.
>>>
>>> I've been using that PPA on 14.04 but the package grass70 is not installed
>>> in my system:
>> ...
>>> And grass is working OK, so I'd say the workaround should be issuing:
>>>
>>> sudo apt-get install grass70-core grass70-gui
>>
>> pgis at pgis-ubuntu64-vm:~$ sudo apt-get install grass70-core grass70-gui
>> Reading package lists... Done
>> Building dependency tree
>> Reading state information... Done
>> Some packages could not be installed. This may mean that you have
>> requested an impossible situation or if you are using the unstable
>> distribution that some required packages have not yet been created
>> or been moved out of Incoming.
>> The following information may help to resolve the situation:
>>
>> The following packages have unmet dependencies:
>> grass70-core : Depends: libgdal1h (>= 1.8.0) but it is not installable
>> Depends: libgeos-c1 (>= 3.4.2) but it is not going to
>> be installed
>> Depends: libproj0 (>= 4.8.0-1) but it is not going to
>> be installed
>> Recommends: gdal-bin but it is not going to be installed
>> Recommends: proj-bin but it is not going to be installed
>> E: Unable to correct problems, you have held broken packages.
>>
>> ... also failing today (Ubuntu 12.04 here)
>>
>> Markus
>> _______________________________________________
>> grass-user mailing list
>> grass-user at lists.osgeo.org
>> http://lists.osgeo.org/mailman/listinfo/grass-user
>
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