[GRASS-user] problem to install grass70 on ubuntu 12.04 and dependencies for kriging
John Nicholls
johnnicholls at fastmail.fm
Fri Aug 29 04:03:35 PDT 2014
Thanks Alex.
I have done the installation of libgeos-dev, libproj-dev and
build-essential, and there also ssemed to be the essential GDAL missing.
v.krige now loads all the dependencies in Grass7 and I'm just trying to
process some data.
Thanks for all your help
John.
On Thu, Aug 28, 2014, at 05:55 PM, Alex Mandel wrote:
> You need to install libgeos-dev, libproj-dev etc and build-essential.
> Installation of R packages on Linux often requires compiling so you need
> all the source headers and compilers for it to work.
>
> -Alex
>
> On 08/28/2014 02:57 AM, John Nicholls wrote:
> > Hi
> > Thanks for the help to get Grass7 running on my laptop.
> > I followed the workaround "sudo apt-get install grass70-core
> > grass70-gui" and now have grass70 running on Ubuntu 14.04 LTS:
> >
> > I am trying to use the v.krige command in Grass7, and when doing so
> > receive the following:
> >
> > Loading dependencies, please wait...
> > Checking rgeos availability: FALSE
> > Note: when rgeos is not available, polygon geometry
> > computations in maptools depend on gpclib,
> > which has a restricted licence. It is disabled by default;
> > to enable gpclib, type gpclibPermit()
> > ERROR: R package(s) rgeos, gstat, spgrass6 missing. Install it/them and
> > re-run v.krige.
> >
> > I've installed python-rpy2.2.3.9-1 via the Ubuntu package manager, and
> > enabled gpclib.
> >
> > Following the instructions in
> > http://grass.osgeo.org/grass65/manuals/v.krige.py.html I've typed in
> > install.packages("rgeos", dep=T)
> > install.packages("gstat", dep=T)
> > install.packages("spgrass6", dep=T)
> > install.packages("automap", dep=T)
> >
> > Unfortunately I'm getting errors in the installation of "rgeos",
> > "gstat", "spgrass6", and "automap", which are detailed below. Does
> > anyone know where I might be going wrong. The version of R installed on
> > my laptop is R version 3.0.2 (2013-09-25) -- "Frisbee Sailing", and I
> > have a version of RKward also installed.
> >
> > I am neither a Grass nor R expert, needless to say....
> >
> > install.packages("rgeos", dep=T)
> > Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> > (as ‘lib’ is unspecified)
> > also installing the dependency ‘XML’
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
> > Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
> > opened URL
> > ==================================================
> > downloaded 1.5 Mb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/rgeos_0.3-6.tar.gz'
> > Content type 'application/x-gzip' length 240510 bytes (234 Kb)
> > opened URL
> > ==================================================
> > downloaded 234 Kb
> >
> > * installing *source* package ‘XML’ ...
> > ** package ‘XML’ successfully unpacked and MD5 sums checked
> > checking for gcc... gcc
> > checking for C compiler default output file name... rm: cannot remove
> > 'a.out.dSYM': Is a directory
> > a.out
> > checking whether the C compiler works... yes
> > checking whether we are cross compiling... no
> > checking for suffix of executables...
> > checking for suffix of object files... o
> > checking whether we are using the GNU C compiler... yes
> > checking whether gcc accepts -g... yes
> > checking for gcc option to accept ISO C89... none needed
> > checking how to run the C preprocessor... gcc -E
> > checking for sed... /bin/sed
> > checking for pkg-config... /usr/bin/pkg-config
> > checking for xml2-config... no
> > Cannot find xml2-config
> > ERROR: configuration failed for package ‘XML’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
> > * installing *source* package ‘rgeos’ ...
> > ** package ‘rgeos’ successfully unpacked and MD5 sums checked
> > configure: CC: gcc -std=gnu99
> > configure: CXX: g++
> > configure: rgeos: 0.3-4
> > checking for /usr/bin/svnversion... no
> > configure: svn revision: 450
> > checking geos-config usability... ./configure: line 2056: geos-config:
> > command not found
> > no
> > configure: error: geos-config not usable
> > ERROR: configuration failed for package ‘rgeos’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgeos’
> >
> > The downloaded source packages are in
> > ‘/tmp/RtmpRYggF0/downloaded_packages’
> > Warning messages:
> > 1: In install.packages("rgeos", dep = T) :
> > installation of package ‘XML’ had non-zero exit status
> > 2: In install.packages("rgeos", dep = T) :
> > installation of package ‘rgeos’ had non-zero exit status
> >
> >> install.packages("gstat", dep=T)
> > Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> > (as ‘lib’ is unspecified)
> > also installing the dependencies ‘spacetime’, ‘rgdal’, ‘rgeos’
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/spacetime_1.1-1.tar.gz'
> > Content type 'application/x-gzip' length 2269252 bytes (2.2 Mb)
> > opened URL
> > ==================================================
> > downloaded 2.2 Mb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
> > Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
> > opened URL
> > ==================================================
> > downloaded 1.5 Mb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/rgeos_0.3-6.tar.gz'
> > Content type 'application/x-gzip' length 240510 bytes (234 Kb)
> > opened URL
> > ==================================================
> > downloaded 234 Kb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/gstat_1.0-19.tar.gz'
> > Content type 'application/x-gzip' length 2045717 bytes (2.0 Mb)
> > opened URL
> > ==================================================
> > downloaded 2.0 Mb
> >
> > * installing *source* package ‘rgdal’ ...
> > ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> > configure: CC: gcc -std=gnu99
> > configure: CXX: g++
> > configure: rgdal: 0.8-15
> > checking for /usr/bin/svnversion... no
> > configure: svn revision: 498
> > configure: gdal-config: gdal-config
> > checking gdal-config usability... ./configure: line 2119: gdal-config:
> > command not found
> > no
> > Error: gdal-config not found
> > The gdal-config script distributed with GDAL could not be found.
> > If you have not installed the GDAL libraries, you can
> > download the source from http://www.gdal.org/
> > If you have installed the GDAL libraries, then make sure that
> > gdal-config is in your path. Try typing gdal-config at a
> > shell prompt and see if it runs. If not, use:
> > --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
> > with appropriate values for your installation.
> >
> > ERROR: configuration failed for package ‘rgdal’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
> > * installing *source* package ‘rgeos’ ...
> > ** package ‘rgeos’ successfully unpacked and MD5 sums checked
> > configure: CC: gcc -std=gnu99
> > configure: CXX: g++
> > configure: rgeos: 0.3-4
> > checking for /usr/bin/svnversion... no
> > configure: svn revision: 450
> > checking geos-config usability... ./configure: line 2056: geos-config:
> > command not found
> > no
> > configure: error: geos-config not usable
> > ERROR: configuration failed for package ‘rgeos’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgeos’
> > ERROR: dependency ‘rgeos’ is not available for package ‘spacetime’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spacetime’
> > ERROR: dependency ‘spacetime’ is not available for package ‘gstat’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/gstat’
> >
> > The downloaded source packages are in
> > ‘/tmp/RtmpRYggF0/downloaded_packages’
> > Warning messages:
> > 1: In install.packages("gstat", dep = T) :
> > installation of package ‘rgdal’ had non-zero exit status
> > 2: In install.packages("gstat", dep = T) :
> > installation of package ‘rgeos’ had non-zero exit status
> > 3: In install.packages("gstat", dep = T) :
> > installation of package ‘spacetime’ had non-zero exit status
> > 4: In install.packages("gstat", dep = T) :
> > installation of package ‘gstat’ had non-zero exit status
> >> install.packages("spgrass6", dep=T)
> > Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> > (as ‘lib’ is unspecified)
> > also installing the dependencies ‘XML’, ‘rgdal’
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
> > Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
> > opened URL
> > ==================================================
> > downloaded 1.5 Mb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
> > Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
> > opened URL
> > ==================================================
> > downloaded 1.5 Mb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/spgrass6_0.8-3.tar.gz'
> > Content type 'application/x-gzip' length 274678 bytes (268 Kb)
> > opened URL
> > ==================================================
> > downloaded 268 Kb
> >
> > * installing *source* package ‘XML’ ...
> > ** package ‘XML’ successfully unpacked and MD5 sums checked
> > checking for gcc... gcc
> > checking for C compiler default output file name... rm: cannot remove
> > 'a.out.dSYM': Is a directory
> > a.out
> > checking whether the C compiler works... yes
> > checking whether we are cross compiling... no
> > checking for suffix of executables...
> > checking for suffix of object files... o
> > checking whether we are using the GNU C compiler... yes
> > checking whether gcc accepts -g... yes
> > checking for gcc option to accept ISO C89... none needed
> > checking how to run the C preprocessor... gcc -E
> > checking for sed... /bin/sed
> > checking for pkg-config... /usr/bin/pkg-config
> > checking for xml2-config... no
> > Cannot find xml2-config
> > ERROR: configuration failed for package ‘XML’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
> > * installing *source* package ‘rgdal’ ...
> > ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> > configure: CC: gcc -std=gnu99
> > configure: CXX: g++
> > configure: rgdal: 0.8-15
> > checking for /usr/bin/svnversion... no
> > configure: svn revision: 498
> > configure: gdal-config: gdal-config
> > checking gdal-config usability... ./configure: line 2119: gdal-config:
> > command not found
> > no
> > Error: gdal-config not found
> > The gdal-config script distributed with GDAL could not be found.
> > If you have not installed the GDAL libraries, you can
> > download the source from http://www.gdal.org/
> > If you have installed the GDAL libraries, then make sure that
> > gdal-config is in your path. Try typing gdal-config at a
> > shell prompt and see if it runs. If not, use:
> > --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
> > with appropriate values for your installation.
> >
> > ERROR: configuration failed for package ‘rgdal’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
> > ERROR: dependency ‘XML’ is not available for package ‘spgrass6’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spgrass6’
> >
> > The downloaded source packages are in
> > ‘/tmp/RtmpRYggF0/downloaded_packages’
> > Warning messages:
> > 1: In install.packages("spgrass6", dep = T) :
> > installation of package ‘XML’ had non-zero exit status
> > 2: In install.packages("spgrass6", dep = T) :
> > installation of package ‘rgdal’ had non-zero exit status
> > 3: In install.packages("spgrass6", dep = T) :
> > installation of package ‘spgrass6’ had non-zero exit status
> >
> >> install.packages("spgrass6", dep=T)
> > Installing package into ‘/home/john/R/i686-pc-linux-gnu-library/3.0’
> > (as ‘lib’ is unspecified)
> > also installing the dependencies ‘XML’, ‘rgdal’
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/XML_3.98-1.1.tar.gz'
> > Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
> > opened URL
> > ==================================================
> > downloaded 1.5 Mb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/rgdal_0.8-16.tar.gz'
> > Content type 'application/x-gzip' length 1616275 bytes (1.5 Mb)
> > opened URL
> > ==================================================
> > downloaded 1.5 Mb
> >
> > trying URL
> > 'http://www.freestatistics.org/cran/src/contrib/spgrass6_0.8-3.tar.gz'
> > Content type 'application/x-gzip' length 274678 bytes (268 Kb)
> > opened URL
> > ==================================================
> > downloaded 268 Kb
> >
> > * installing *source* package ‘XML’ ...
> > ** package ‘XML’ successfully unpacked and MD5 sums checked
> > checking for gcc... gcc
> > checking for C compiler default output file name... rm: cannot remove
> > 'a.out.dSYM': Is a directory
> > a.out
> > checking whether the C compiler works... yes
> > checking whether we are cross compiling... no
> > checking for suffix of executables...
> > checking for suffix of object files... o
> > checking whether we are using the GNU C compiler... yes
> > checking whether gcc accepts -g... yes
> > checking for gcc option to accept ISO C89... none needed
> > checking how to run the C preprocessor... gcc -E
> > checking for sed... /bin/sed
> > checking for pkg-config... /usr/bin/pkg-config
> > checking for xml2-config... no
> > Cannot find xml2-config
> > ERROR: configuration failed for package ‘XML’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/XML’
> > * installing *source* package ‘rgdal’ ...
> > ** package ‘rgdal’ successfully unpacked and MD5 sums checked
> > configure: CC: gcc -std=gnu99
> > configure: CXX: g++
> > configure: rgdal: 0.8-15
> > checking for /usr/bin/svnversion... no
> > configure: svn revision: 498
> > configure: gdal-config: gdal-config
> > checking gdal-config usability... ./configure: line 2119: gdal-config:
> > command not found
> > no
> > Error: gdal-config not found
> > The gdal-config script distributed with GDAL could not be found.
> > If you have not installed the GDAL libraries, you can
> > download the source from http://www.gdal.org/
> > If you have installed the GDAL libraries, then make sure that
> > gdal-config is in your path. Try typing gdal-config at a
> > shell prompt and see if it runs. If not, use:
> > --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
> > with appropriate values for your installation.
> >
> > ERROR: configuration failed for package ‘rgdal’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/rgdal’
> > ERROR: dependency ‘XML’ is not available for package ‘spgrass6’
> > * removing ‘/home/john/R/i686-pc-linux-gnu-library/3.0/spgrass6’
> >
> > The downloaded source packages are in
> > ‘/tmp/RtmpRYggF0/downloaded_packages’
> > Warning messages:
> > 1: In install.packages("spgrass6", dep = T) :
> > installation of package ‘XML’ had non-zero exit status
> > 2: In install.packages("spgrass6", dep = T) :
> > installation of package ‘rgdal’ had non-zero exit status
> > 3: In install.packages("spgrass6", dep = T) :
> > installation of package ‘spgrass6’ had non-zero exit status
> >
> > On Wed, Aug 27, 2014, at 10:10 PM, Markus Neteler wrote:
> >> On Wed, Aug 27, 2014 at 9:08 PM, César Augusto Ramírez Franco
> >> <caesarivs at gmail.com> wrote:
> >>> I don't know why, but there appears to be a conflict between grass70 and
> >>> grass70-core packages.
> >>>
> >>> I've been using that PPA on 14.04 but the package grass70 is not installed
> >>> in my system:
> >> ...
> >>> And grass is working OK, so I'd say the workaround should be issuing:
> >>>
> >>> sudo apt-get install grass70-core grass70-gui
> >>
> >> pgis at pgis-ubuntu64-vm:~$ sudo apt-get install grass70-core grass70-gui
> >> Reading package lists... Done
> >> Building dependency tree
> >> Reading state information... Done
> >> Some packages could not be installed. This may mean that you have
> >> requested an impossible situation or if you are using the unstable
> >> distribution that some required packages have not yet been created
> >> or been moved out of Incoming.
> >> The following information may help to resolve the situation:
> >>
> >> The following packages have unmet dependencies:
> >> grass70-core : Depends: libgdal1h (>= 1.8.0) but it is not installable
> >> Depends: libgeos-c1 (>= 3.4.2) but it is not going to
> >> be installed
> >> Depends: libproj0 (>= 4.8.0-1) but it is not going to
> >> be installed
> >> Recommends: gdal-bin but it is not going to be installed
> >> Recommends: proj-bin but it is not going to be installed
> >> E: Unable to correct problems, you have held broken packages.
> >>
> >> ... also failing today (Ubuntu 12.04 here)
> >>
> >> Markus
> >> _______________________________________________
> >> grass-user mailing list
> >> grass-user at lists.osgeo.org
> >> http://lists.osgeo.org/mailman/listinfo/grass-user
> >
>
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