[GRASS-user] Open Peer-Review Reproducible Publication with Org and GRASS

Markus Neteler neteler at osgeo.org
Sun Jun 12 03:28:50 PDT 2016


On Sun, Jun 12, 2016 at 2:28 AM, Ken Mankoff <mankoff at gmail.com> wrote:
>> On Fri, Jun 3, 2016 at 4:19 PM, Ken Mankoff <mankoff at gmail.com> wrote:
>> How about distributing it as a docker image?
>
> A lot of people have suggested Docker. I'm thinking about reproducibility on the decadal timeframe more than next month or next year. Perhaps that is the wrong focus? Anyway, I don't trust Docker on these timescales.

Here an example what has been done

Topic: Amazon Forest Green-Up During 2005 Drought
Science article: http://science.sciencemag.org/content/318/5850/612

Others reproduced the computations:

Reproduction of the computations on the article "Amazon Forest
Green-Up During 2005 Drought"
https://github.com/albhasan/amazonGreenUp2005

The git/docker repo itself is tiny, it basically installs itself,
downloads the needed data, processes them, and runs the computations.
Quite interesting.

In the GRASS GIS case and maybe also your case, a shell/Python script
to batch process the data might do the same as you say.

Above just for illustration.

Best
Markus


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