[GRASS-user] v.class.mlR Error

Thu Jun 7 06:17:48 PDT 2018

The first 20+ lines of Stats_Training_Ben_test:

cat,area,perimeter,compact_circle,compact_square,fd,WV_Benatimofo_1_min,WV_Benatimofo_1_max,WV_Benatimofo_1_range,WV_Benatimofo_1_mean,WV_Benatimofo_1_stddev,WV_Benatimofo_1_variance,WV_Benatimofo_1_coeff_var,WV_Benatimofo_1_sum,WV_Benatimofo_1_first_quart,WV_Benatimofo_1_median,WV_Benatimofo_1_third_quart,WV_Benatimofo_2_min,WV_Benatimofo_2_max,WV_Benatimofo_2_range,WV_Benatimofo_2_mean,WV_Benatimofo_2_stddev,WV_Benatimofo_2_variance,WV_Benatimofo_2_coeff_var,WV_Benatimofo_2_sum,WV_Benatimofo_2_first_quart,WV_Benatimofo_2_median,WV_Benatimofo_2_third_quart,WV_Benatimofo_3_min,WV_Benatimofo_3_max,WV_Benatimofo_3_range,WV_Benatimofo_3_mean,WV_Benatimofo_3_stddev,WV_Benatimofo_3_variance,WV_Benatimofo_3_coeff_var,WV_Benatimofo_3_sum,WV_Benatimofo_3_first_quart,WV_Benatimofo_3_median,WV_Benatimofo_3_third_quart,WV_Benatimofo_4_min,WV_Benatimofo_4_max,WV_Benatimofo_4_range,WV_Benatimofo_4_mean,WV_Benatimofo_4_stddev,WV_Benatimofo_4_variance,WV_Benatimofo_4_coeff_var,WV_Benatimofo_4_sum,WV_Benatimofo_4_first_quart,WV_Benatimofo_4_median,WV_Benatimofo_4_third_quart
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---------------------
All the lines of the output of v.db.select Training_Ben2 at haarlooj_Ben_Test:

cat|id|Type|code
1|4|B29|18
2|5|B31|19
3|3|B28|17
4|2|B27|16
5|1|A7|15
6|22|wolk|1
7|23|wolk|1
8|20|straat|2
9|6|bare1|4
10|8|dorp|5
11|19|rivier|3
12|24|zwamp|9
13|9|interesting|7
14|7|bare2|4
15|12|maripa2|14
16|21|straat|2
17|25|zwamp2|10
18|15|openzwamp|8
19|13|mataki|12
20|14|Mauricius|11
21|10|maripa|13
22|16|privatehousing|6
23|17|privatehousing|6
24|18|privatehousing|6

>> At first I was using "Type" as attribute collumn for classification, but
just in case I added the column "code" with only numbers to use
as attribute column.

Reinstalling it and giving another go.

Best,
Jamille

On Thu, Jun 7, 2018 at 9:39 AM, Moritz Lennert <mlennert at club.worldonline.be
> wrote:

> On 07/06/18 13:45, Jamille Haarloo wrote:
>
>> I see. That was one of the big problems then. I knew it used R-resources
>> but wasn't sure the software itself was required. Must have overlooked it
>> in the documentation and other user- topics as I was reading about the
>> module.
>>
>
> You are right that it is never explicitely stated that it is the user's
> responsibility to install R. I just committed a patch to the man page which
> explains this in the Dependencies section.
>
>
>> Now I have R-3.5, but still get an error:
>>
>> v.class.mlR --overwrite training_map=Training_Ben2 at haarlooj_Ben_Test
>> segments_file=C:\Users\haarlooj\Documents\CELOS\Stats_Training_Ben_test
>> raster_segments_map=best_myregion1_at_haarlooj_Ben_Test_
>> rank1 at haarlooj_Ben_Test train_class_column=code output_class_column=vote
>> output_prob_column=prob classifiers=svmRadial,rf,C5.0 folds=5 partitions=10
>> tunelength=10 weighting_modes=smv,qbwwv weighting_metric=accuracy
>> classification_results=C:\Users\haarlooj\Documents\CELOS\v.
>> class.mIRR_optional_output\Ben_test_Classifier-results
>> accuracy_file=C:\Users\haarlooj\Documents\CELOS\v.class.
>> mIRR_optional_output\Ben_test_Classifier-accuracy
>> model_details=C:\Users\haarlooj\Documents\CELOS\v.class.
>> mIRR_optional_output\Ben_test_Classifier-module-runs
>> bw_plot_file=C:\Users\haarlooj\Documents\CELOS\v.class.mIRR_
>> optional_output\Ben_test_Classifier-performance
>> r_script_file=C:\Users\haarlooj\Documents\CELOS\v.class.
>> mIRR_optional_output\Ben_test_R_script processes=3
>>
>
> [...]
>
> Error in eval(predvars, data, env) : object 'id' not found
>>
>
> This seems to be the relevant error, but I'm not sure I understand where
> it comes from.
>
> Could you provide us with the first 20 lines of
>
> C:\Users\haarlooj\Documents\CELOS\Stats_Training_Ben_test
>
> and the first 20 lines of the output of
>
> v.db.select Training_Ben2 at haarlooj_Ben_Test
>
> ?
>
>
> Calls: data.frame ... predict.train -> model.frame -> model.frame.default
>> -> eval -> eval
>> Execution halted
>> ERROR: There was an error in the execution of the R script.
>> Please check the R output.
>> Error in atexit._run_exitfuncs:
>> Traceback (most recent call last):
>>    File "C:\Program Files\GRASS GIS
>> 7.4.0\Python27\lib\atexit.py", line 24, in _run_exitfuncs
>>      func(*targs, **kargs)
>>    File "C:\Users\haarlooj\AppData\Roaming\GRASS7\addons/scri
>> pts/v.class.mlR.py <http://v.class.mlR.py>", line 236, in cleanup
>>      gscript.try_remove(model_output_csv)
>> NameError: global name 'model_output_csv' is not defined
>> Error in sys.exitfunc:
>> Traceback (most recent call last):
>>    File "C:\Program Files\GRASS GIS
>> 7.4.0\Python27\lib\atexit.py", line 24, in _run_exitfuncs
>>      func(*targs, **kargs)
>>    File "C:\Users\haarlooj\AppData\Roaming\GRASS7\addons/scri
>> pts/v.class.mlR.py <http://v.class.mlR.py>", line 236, in cleanup
>>      gscript.try_remove(model_output_csv)
>> NameError: global name 'model_output_csv' is not defined
>>
>
>
> This last error should not be happening anymore since yesterday. Could you
> reinstall using g.extension ?
>
> Moritz
>
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