[GRASS-user] [GRASS-dev] GRASS 7.8.5 compile errors
Maris Nartiss
maris.gis at gmail.com
Thu Aug 12 00:08:57 PDT 2021
This is a know issue. Most likely you have two versions of PROJ
library installed. Make sure to have only one llibproj.so file
present.
Here's a check for it (one line – good, more than one – bad):
ldd /home/teaiii/grass-7.8.5/lib/libgrass_gproj.so | grep proj
Here's a old bug report:
https://github.com/OSGeo/grass/issues/435#issuecomment-688807074
Good luck,
Māris.
2021-08-11 22:06 GMT+03:00, Thomas Adams <tea3rd at gmail.com>:
> Hi Anna,
>
> Thank you for your help sorting this out... Not surprisingly, I get the
> same errors in grass-7.8.6RC2
>
> *Error in /home/teaiii/grass-7.8.5/lib/python/ctypes:*
>
> Error: /usr/include/stdio.h:246: Syntax error at '__filename'
> Error: /usr/include/stdio.h:247: Syntax error at '__modes'
> Error: /usr/include/stdio.h:252: Syntax error at '__filename'
> Error: /usr/include/stdio.h:253: Syntax error at '__modes'
> Error: /usr/include/stdio.h:254: Syntax error at '__stream'
> Error: /usr/include/stdio.h:304: Syntax error at '__stream'
> Error: /usr/include/stdio.h:304: Syntax error at '__buf'
> Error: /usr/include/stdio.h:308: Syntax error at '__stream'
> Error: /usr/include/stdio.h:308: Syntax error at '__buf'
> Error: /usr/include/stdio.h:309: Syntax error at 'size_t'
> Error: /usr/include/stdio.h:314: Syntax error at '__stream'
> Error: /usr/include/stdio.h:314: Syntax error at '__buf'
> Error: /usr/include/stdio.h:326: Syntax error at '__stream'
> Error: /usr/include/stdio.h:327: Syntax error at '__format'
> Error: /usr/include/stdio.h:332: Syntax error at '__format'
> Error: /usr/include/stdio.h:334: Syntax error at '__s'
> Error: /usr/include/stdio.h:335: Syntax error at '__format'
> Error: /usr/include/stdio.h:341: Syntax error at '__s'
> Error: /usr/include/stdio.h:341: Syntax error at '__format'
> Error: /usr/include/stdio.h:347: Syntax error at '__format'
> Error: /usr/include/stdio.h:349: Syntax error at '__s'
> Error: /usr/include/stdio.h:349: Syntax error at '__format'
> Error: /usr/include/stdio.h:354: Syntax error at '__s'
> Error: /usr/include/stdio.h:355: Syntax error at 'const'
> Error: /usr/include/stdio.h:355: Syntax error at '__format'
> Error: /usr/include/stdio.h:358: Syntax error at '__s'
> Error: /usr/include/stdio.h:359: Syntax error at 'const'
> Error: /usr/include/stdio.h:359: Syntax error at '__format'
> Error: /usr/include/stdio.h:379: Syntax error at '__fmt'
> Error: /usr/include/stdio.h:382: Syntax error at '__fmt'
> Error: /usr/include/stdio.h:391: Syntax error at '__stream'
> Error: /usr/include/stdio.h:392: Syntax error at '__format'
> Error: /usr/include/stdio.h:397: Syntax error at '__format'
> Error: /usr/include/stdio.h:399: Syntax error at '__s'
> Error: /usr/include/stdio.h:400: Syntax error at '__format'
> Error: /usr/include/stdio.h:416: Syntax error at '__stream'
> Error: /usr/include/stdio.h:417: Syntax error at '__format'
> Error: /usr/include/stdio.h:418: Syntax error at '__format'
> Error: /usr/include/stdio.h:419: Syntax error at '__s'
> Error: /usr/include/stdio.h:420: Syntax error at '__format'
> Error: /usr/include/stdio.h:432: Syntax error at '__s'
> Error: /usr/include/stdio.h:432: Syntax error at '__format'
> Error: /usr/include/stdio.h:440: Syntax error at '__format'
> Error: /usr/include/stdio.h:444: Syntax error at '__s'
> Error: /usr/include/stdio.h:445: Syntax error at '__format'
> Error: /usr/include/stdio.h:465: Syntax error at '__s'
> Error: /usr/include/stdio.h:466: Syntax error at '__format'
> Error: /usr/include/stdio.h:468: Syntax error at '__format'
> Error: /usr/include/stdio.h:470: Syntax error at '__s'
> Error: /usr/include/stdio.h:471: Syntax error at '__format'
> Error: /usr/include/stdio.h:564: Syntax error at '__s'
> Error: /usr/include/stdio.h:564: Syntax error at 'FILE'
> Error: /usr/include/stdio.h:603: Syntax error at '__lineptr'
> Error: /usr/include/stdio.h:604: Syntax error at '__n'
> Error: /usr/include/stdio.h:605: Syntax error at 'FILE'
> Error: /usr/include/stdio.h:606: Syntax error at '__lineptr'
> Error: /usr/include/stdio.h:607: Syntax error at '__n'
> Error: /usr/include/stdio.h:608: Syntax error at 'FILE'
> Error: /usr/include/stdio.h:616: Syntax error at '__lineptr'
> Error: /usr/include/stdio.h:617: Syntax error at '__n'
> Error: /usr/include/stdio.h:618: Syntax error at '__stream'
> Error: /usr/include/stdio.h:626: Syntax error at '__s'
> Error: /usr/include/stdio.h:626: Syntax error at '__stream'
> Error: /usr/include/stdio.h:646: Syntax error at '__ptr'
> Error: /usr/include/stdio.h:647: Syntax error at 'size_t'
> Error: /usr/include/stdio.h:647: Syntax error at '__stream'
> Error: /usr/include/stdio.h:652: Syntax error at '__ptr'
> Error: /usr/include/stdio.h:653: Syntax error at 'size_t'
> Error: /usr/include/stdio.h:653: Syntax error at '__s'
> Error: /usr/include/stdio.h:673: Syntax error at '__ptr'
> Error: /usr/include/stdio.h:674: Syntax error at 'size_t'
> Error: /usr/include/stdio.h:674: Syntax error at '__stream'
> Error: /usr/include/stdio.h:675: Syntax error at '__ptr'
> Error: /usr/include/stdio.h:676: Syntax error at 'size_t'
> Error: /usr/include/stdio.h:676: Syntax error at '__stream'
> Error: /usr/include/stdio.h:731: Syntax error at '__stream'
> Error: /usr/include/stdio.h:731: Syntax error at '__pos'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:101: Syntax error at
> '__readfds'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:102: Syntax error at
> '__writefds'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:103: Syntax error at
> '__exceptfds'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:104: Syntax error at
> '__timeout'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:113: Syntax error at
> '__readfds'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:114: Syntax error at
> '__writefds'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:115: Syntax error at
> '__exceptfds'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:116: Syntax error at
> '__timeout'
> Error: /usr/include/x86_64-linux-gnu/sys/select.h:117: Syntax error at
> '__sigmask'
> Error: /usr/include/x86_64-linux-gnu/sys/stat.h:205: Syntax error at
> '__file'
> Error: /usr/include/x86_64-linux-gnu/sys/stat.h:206: Syntax error at
> '__buf'
> Error: /usr/include/x86_64-linux-gnu/sys/stat.h:234: Syntax error at
> '__file'
> Error: /usr/include/x86_64-linux-gnu/sys/stat.h:235: Syntax error at
> '__buf'
> Error: /usr/include/x86_64-linux-gnu/sys/stat.h:259: Syntax error at
> '__file'
> Error: /usr/include/x86_64-linux-gnu/sys/stat.h:260: Syntax error at
> '__buf'
> Status: Processing description list.
> Status: Writing to OBJ.x86_64-pc-linux-gnu/imagery.py.
> Status: Wrapping complete.
> double free or corruption (out)
> Aborted (core dumped)
> make[1]: *** [Makefile:107: OBJ.x86_64-pc-linux-gnu/imagery.py] Error 134
> make[1]: Leaving directory '/home/teaiii/grass-7.8.5/lib/python/ctypes'
> make: *** [Makefile:86: default] Error 2
>
> *Error in /home/teaiii/grass-7.8.5/vector/v.out.ogr :*
> teaiii at tea-Leopard-WS:~/grass-7.8.5/vector/v.out.ogr$ make
> VERSION_NUMBER=7.8.5
> /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/g.html2man.py
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/html/v.out.ogr.html"
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1"
> Traceback (most recent call last):
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> g.html2man.py", line 45, in main
> p.feed(line)
> File "/usr/lib/python3.8/html/parser.py", line 111, in feed
> self.goahead(0)
> File "/usr/lib/python3.8/html/parser.py", line 171, in goahead
> k = self.parse_starttag(i)
> File "/usr/lib/python3.8/html/parser.py", line 345, in parse_starttag
> self.handle_starttag(tag, attrs)
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> line 208, in handle_starttag
> while not self.is_allowed(tag):
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> line 204, in is_allowed
> return tag not in self.excluded and tag in allowed[self.top()]
> KeyError: None
>
> During handling of the above exception, another exception occurred:
>
> Traceback (most recent call last):
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> g.html2man.py", line 78, in <module>
> main()
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> g.html2man.py", line 49, in main
> (infile, err.lineno, err.offset, err.msg))
> AttributeError: 'KeyError' object has no attribute 'lineno'
> make: *** [../../include/Make/Html.make:11:
> /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1]
> Error 1
>
> *Error in /home/teaiii/grass-7.8.5/man :*
>
> VERSION_NUMBER=7.8.5
> /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/g.html2man.py
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/html/v.out.ogr.html"
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1"
> Traceback (most recent call last):
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> g.html2man.py", line 45, in main
> p.feed(line)
> File "/usr/lib/python3.8/html/parser.py", line 111, in feed
> self.goahead(0)
> File "/usr/lib/python3.8/html/parser.py", line 171, in goahead
> k = self.parse_starttag(i)
> File "/usr/lib/python3.8/html/parser.py", line 345, in parse_starttag
> self.handle_starttag(tag, attrs)
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> line 208, in handle_starttag
> while not self.is_allowed(tag):
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> line 204, in is_allowed
> return tag not in self.excluded and tag in allowed[self.top()]
> KeyError: None
>
> During handling of the above exception, another exception occurred:
>
> Traceback (most recent call last):
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> g.html2man.py", line 78, in <module>
> main()
> File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> g.html2man.py", line 49, in main
> (infile, err.lineno, err.offset, err.msg))
> AttributeError: 'KeyError' object has no attribute 'lineno'
> make[2]: *** [../include/Make/Html.make:11:
> /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1]
> Error 1
> make[2]: Leaving directory '/home/teaiii/grass-7.8.5/man'
> make[1]: *** [Makefile:53: manpages] Error 2
> make[1]: Leaving directory '/home/teaiii/grass-7.8.5/man'
> make: *** [Makefile:46: default] Error 2
>
> Thank you, again!
>
> Best,
> Tom
>
> On Wed, Aug 11, 2021 at 12:43 PM Anna Petrášová <kratochanna at gmail.com>
> wrote:
>
>>
>>
>> On Tue, Aug 10, 2021 at 10:06 AM Thomas Adams <tea3rd at gmail.com> wrote:
>>
>>> Hi all!
>>>
>>> I just upgraded from Ubuntu 18.04 to 20.04 and have to
>>> re-compile/install
>>> GRASS 7.8.5. I'm getting these errors:
>>>
>>> Errors in:
>>> /home/teaiii/grass-7.8.5/lib/python/ctypes
>>> /home/teaiii/grass-7.8.5/vector/v.out.ogr
>>> /home/teaiii/grass-7.8.5/man
>>>
>>
>> What are the actual errors when you go in the directories and run make?
>>
>>>
>>> I'm sure I have created some library incompatibilities, so I'm trying to
>>> identify where the problems are. I know I have python 3.8 installed, but
>>> when I run python -V I get:
>>>
>>> Python 2.7.18
>>>
>>> Do I need to compile against python 3.8; if so, how do I do that?
>>>
>>> My configure looks like this:
>>>
>>> CFLAGS="-O2 -Wall" LDFLAGS="-s" ./configure \
>>> --enable-64bit \
>>> --with-cxx \
>>> --enable-largefile=yes \
>>> --with-nls \
>>> --with-readline \
>>> --with-pthread \
>>> --with-gdal=/usr/local/bin/gdal-config \
>>> --with-proj --with-proj-share=/usr/local/share/proj \
>>> --with-proj-includes=/usr/local/include \
>>> --with-proj-libs=/usr/local/lib \
>>> --with-geos=/usr/local/bin/geos-config \
>>> --with-wxwidgets=/usr/local/bin/wx-config \
>>> --with-cairo \
>>> --with-opengl-libs=/usr/include/GL \
>>> --with-freetype=yes \
>>> --with-freetype-includes=/usr/include/freetype2/ \
>>> --with-postgres=yes \
>>> --with-postgres-includes=/usr/local/include \
>>> --with-sqlite=yes \
>>> --with-mysql=yes \
>>> --with-mysql-includes=/usr/include/mysql \
>>> --with-odbc=no \
>>> --with-blas \
>>> --with-lapack \
>>> --with-liblas=yes \
>>> --with-liblas-config=/usr/bin/liblas-config \
>>> --with-netcdf=/usr/local/bin/nc-config \
>>> --with-blas-libs=/usr/local/lib \
>>> --with-lapack-includes=/usr/include \
>>> --with-lapack-libs=/usr/lib \
>>> --with-blas-includes=/usr/local/include \
>>> --with-zstd \
>>> --with-zstd-includes=/usr/local/include \
>>> --with-zstd-libs=/usr/local/lib
>>>
>>> with no errors.
>>>
>>> Any/all suggestions are appreciated...
>>>
>>> Regards,
>>> Tom
>>>
>>> --
>>>
>>> _______________________________________________
>>> grass-dev mailing list
>>> grass-dev at lists.osgeo.org
>>> https://lists.osgeo.org/mailman/listinfo/grass-dev
>>>
>>
>
> --
> Thomas E Adams, III
> 207 Chowning Place
> Blacksburg, VA 24060
> tea3rd at gmail.com (personal)
> tea at terrapredictions.org (work)
>
> 1 (513) 739-9512 (cell)
>
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