[GRASS-user] [GRASS-dev] GRASS 7.8.5 compile errors

Thomas Adams tea3rd at gmail.com
Thu Aug 12 03:11:25 PDT 2021 

Hi Māris,

When I run the command ldd /home/teaiii/grass-7.8.5/lib/libgrass_gproj.so |
grep proj , I get:

ldd: /home/teaiii/grass-7.8.5/lib/libgrass_gproj.so: No such file or
directory

There is no libgrass_gproj.so file in /home/teaiii/grass-7.8.5/lib/l in
fact just subdirectories along with Makefile and README

Tom

On Thu, Aug 12, 2021 at 3:08 AM Maris Nartiss <maris.gis at gmail.com> wrote:

> This is a know issue. Most likely you have two versions of PROJ
> library installed. Make sure to have only one llibproj.so file
> present.
> Here's a check for it (one line – good, more than one – bad):
> ldd /home/teaiii/grass-7.8.5/lib/libgrass_gproj.so | grep proj
>
> Here's a old bug report:
> https://github.com/OSGeo/grass/issues/435#issuecomment-688807074
>
> Good luck,
> Māris.
>
>
> 2021-08-11 22:06 GMT+03:00, Thomas Adams <tea3rd at gmail.com>:
> > Hi Anna,
> >
> > Thank you for your help sorting this out... Not surprisingly, I get the
> > same errors in grass-7.8.6RC2
> >
> > *Error in /home/teaiii/grass-7.8.5/lib/python/ctypes:*
> >
> > Error: /usr/include/stdio.h:246: Syntax error at '__filename'
> > Error: /usr/include/stdio.h:247: Syntax error at '__modes'
> > Error: /usr/include/stdio.h:252: Syntax error at '__filename'
> > Error: /usr/include/stdio.h:253: Syntax error at '__modes'
> > Error: /usr/include/stdio.h:254: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:304: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:304: Syntax error at '__buf'
> > Error: /usr/include/stdio.h:308: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:308: Syntax error at '__buf'
> > Error: /usr/include/stdio.h:309: Syntax error at 'size_t'
> > Error: /usr/include/stdio.h:314: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:314: Syntax error at '__buf'
> > Error: /usr/include/stdio.h:326: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:327: Syntax error at '__format'
> > Error: /usr/include/stdio.h:332: Syntax error at '__format'
> > Error: /usr/include/stdio.h:334: Syntax error at '__s'
> > Error: /usr/include/stdio.h:335: Syntax error at '__format'
> > Error: /usr/include/stdio.h:341: Syntax error at '__s'
> > Error: /usr/include/stdio.h:341: Syntax error at '__format'
> > Error: /usr/include/stdio.h:347: Syntax error at '__format'
> > Error: /usr/include/stdio.h:349: Syntax error at '__s'
> > Error: /usr/include/stdio.h:349: Syntax error at '__format'
> > Error: /usr/include/stdio.h:354: Syntax error at '__s'
> > Error: /usr/include/stdio.h:355: Syntax error at 'const'
> > Error: /usr/include/stdio.h:355: Syntax error at '__format'
> > Error: /usr/include/stdio.h:358: Syntax error at '__s'
> > Error: /usr/include/stdio.h:359: Syntax error at 'const'
> > Error: /usr/include/stdio.h:359: Syntax error at '__format'
> > Error: /usr/include/stdio.h:379: Syntax error at '__fmt'
> > Error: /usr/include/stdio.h:382: Syntax error at '__fmt'
> > Error: /usr/include/stdio.h:391: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:392: Syntax error at '__format'
> > Error: /usr/include/stdio.h:397: Syntax error at '__format'
> > Error: /usr/include/stdio.h:399: Syntax error at '__s'
> > Error: /usr/include/stdio.h:400: Syntax error at '__format'
> > Error: /usr/include/stdio.h:416: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:417: Syntax error at '__format'
> > Error: /usr/include/stdio.h:418: Syntax error at '__format'
> > Error: /usr/include/stdio.h:419: Syntax error at '__s'
> > Error: /usr/include/stdio.h:420: Syntax error at '__format'
> > Error: /usr/include/stdio.h:432: Syntax error at '__s'
> > Error: /usr/include/stdio.h:432: Syntax error at '__format'
> > Error: /usr/include/stdio.h:440: Syntax error at '__format'
> > Error: /usr/include/stdio.h:444: Syntax error at '__s'
> > Error: /usr/include/stdio.h:445: Syntax error at '__format'
> > Error: /usr/include/stdio.h:465: Syntax error at '__s'
> > Error: /usr/include/stdio.h:466: Syntax error at '__format'
> > Error: /usr/include/stdio.h:468: Syntax error at '__format'
> > Error: /usr/include/stdio.h:470: Syntax error at '__s'
> > Error: /usr/include/stdio.h:471: Syntax error at '__format'
> > Error: /usr/include/stdio.h:564: Syntax error at '__s'
> > Error: /usr/include/stdio.h:564: Syntax error at 'FILE'
> > Error: /usr/include/stdio.h:603: Syntax error at '__lineptr'
> > Error: /usr/include/stdio.h:604: Syntax error at '__n'
> > Error: /usr/include/stdio.h:605: Syntax error at 'FILE'
> > Error: /usr/include/stdio.h:606: Syntax error at '__lineptr'
> > Error: /usr/include/stdio.h:607: Syntax error at '__n'
> > Error: /usr/include/stdio.h:608: Syntax error at 'FILE'
> > Error: /usr/include/stdio.h:616: Syntax error at '__lineptr'
> > Error: /usr/include/stdio.h:617: Syntax error at '__n'
> > Error: /usr/include/stdio.h:618: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:626: Syntax error at '__s'
> > Error: /usr/include/stdio.h:626: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:646: Syntax error at '__ptr'
> > Error: /usr/include/stdio.h:647: Syntax error at 'size_t'
> > Error: /usr/include/stdio.h:647: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:652: Syntax error at '__ptr'
> > Error: /usr/include/stdio.h:653: Syntax error at 'size_t'
> > Error: /usr/include/stdio.h:653: Syntax error at '__s'
> > Error: /usr/include/stdio.h:673: Syntax error at '__ptr'
> > Error: /usr/include/stdio.h:674: Syntax error at 'size_t'
> > Error: /usr/include/stdio.h:674: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:675: Syntax error at '__ptr'
> > Error: /usr/include/stdio.h:676: Syntax error at 'size_t'
> > Error: /usr/include/stdio.h:676: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:731: Syntax error at '__stream'
> > Error: /usr/include/stdio.h:731: Syntax error at '__pos'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:101: Syntax error at
> > '__readfds'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:102: Syntax error at
> > '__writefds'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:103: Syntax error at
> > '__exceptfds'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:104: Syntax error at
> > '__timeout'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:113: Syntax error at
> > '__readfds'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:114: Syntax error at
> > '__writefds'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:115: Syntax error at
> > '__exceptfds'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:116: Syntax error at
> > '__timeout'
> > Error: /usr/include/x86_64-linux-gnu/sys/select.h:117: Syntax error at
> > '__sigmask'
> > Error: /usr/include/x86_64-linux-gnu/sys/stat.h:205: Syntax error at
> > '__file'
> > Error: /usr/include/x86_64-linux-gnu/sys/stat.h:206: Syntax error at
> > '__buf'
> > Error: /usr/include/x86_64-linux-gnu/sys/stat.h:234: Syntax error at
> > '__file'
> > Error: /usr/include/x86_64-linux-gnu/sys/stat.h:235: Syntax error at
> > '__buf'
> > Error: /usr/include/x86_64-linux-gnu/sys/stat.h:259: Syntax error at
> > '__file'
> > Error: /usr/include/x86_64-linux-gnu/sys/stat.h:260: Syntax error at
> > '__buf'
> > Status: Processing description list.
> > Status: Writing to OBJ.x86_64-pc-linux-gnu/imagery.py.
> > Status: Wrapping complete.
> > double free or corruption (out)
> > Aborted (core dumped)
> > make[1]: *** [Makefile:107: OBJ.x86_64-pc-linux-gnu/imagery.py] Error 134
> > make[1]: Leaving directory '/home/teaiii/grass-7.8.5/lib/python/ctypes'
> > make: *** [Makefile:86: default] Error 2
> >
> > *Error in /home/teaiii/grass-7.8.5/vector/v.out.ogr :*
> > teaiii at tea-Leopard-WS:~/grass-7.8.5/vector/v.out.ogr$ make
> > VERSION_NUMBER=7.8.5
> > /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/g.html2man.py
> >
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/html/v.out.ogr.html"
> >
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1"
> > Traceback (most recent call last):
> >   File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> > g.html2man.py", line 45, in main
> >     p.feed(line)
> >   File "/usr/lib/python3.8/html/parser.py", line 111, in feed
> >     self.goahead(0)
> >   File "/usr/lib/python3.8/html/parser.py", line 171, in goahead
> >     k = self.parse_starttag(i)
> >   File "/usr/lib/python3.8/html/parser.py", line 345, in parse_starttag
> >     self.handle_starttag(tag, attrs)
> >   File
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> > line 208, in handle_starttag
> >     while not self.is_allowed(tag):
> >   File
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> > line 204, in is_allowed
> >     return tag not in self.excluded and tag in allowed[self.top()]
> > KeyError: None
> >
> > During handling of the above exception, another exception occurred:
> >
> > Traceback (most recent call last):
> >   File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> > g.html2man.py", line 78, in <module>
> >     main()
> >   File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> > g.html2man.py", line 49, in main
> >     (infile, err.lineno, err.offset, err.msg))
> > AttributeError: 'KeyError' object has no attribute 'lineno'
> > make: *** [../../include/Make/Html.make:11:
> >
> /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1]
> > Error 1
> >
> > *Error in /home/teaiii/grass-7.8.5/man :*
> >
> > VERSION_NUMBER=7.8.5
> > /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/g.html2man.py
> >
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/html/v.out.ogr.html"
> >
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1"
> > Traceback (most recent call last):
> >   File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> > g.html2man.py", line 45, in main
> >     p.feed(line)
> >   File "/usr/lib/python3.8/html/parser.py", line 111, in feed
> >     self.goahead(0)
> >   File "/usr/lib/python3.8/html/parser.py", line 171, in goahead
> >     k = self.parse_starttag(i)
> >   File "/usr/lib/python3.8/html/parser.py", line 345, in parse_starttag
> >     self.handle_starttag(tag, attrs)
> >   File
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> > line 208, in handle_starttag
> >     while not self.is_allowed(tag):
> >   File
> "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/ghtml.py",
> > line 204, in is_allowed
> >     return tag not in self.excluded and tag in allowed[self.top()]
> > KeyError: None
> >
> > During handling of the above exception, another exception occurred:
> >
> > Traceback (most recent call last):
> >   File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> > g.html2man.py", line 78, in <module>
> >     main()
> >   File "/home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/tools/
> > g.html2man.py", line 49, in main
> >     (infile, err.lineno, err.offset, err.msg))
> > AttributeError: 'KeyError' object has no attribute 'lineno'
> > make[2]: *** [../include/Make/Html.make:11:
> >
> /home/teaiii/grass-7.8.5/dist.x86_64-pc-linux-gnu/docs/man/man1/v.out.ogr.1]
> > Error 1
> > make[2]: Leaving directory '/home/teaiii/grass-7.8.5/man'
> > make[1]: *** [Makefile:53: manpages] Error 2
> > make[1]: Leaving directory '/home/teaiii/grass-7.8.5/man'
> > make: *** [Makefile:46: default] Error 2
> >
> > Thank you, again!
> >
> > Best,
> > Tom
> >
> > On Wed, Aug 11, 2021 at 12:43 PM Anna Petrášová <kratochanna at gmail.com>
> > wrote:
> >
> >>
> >>
> >> On Tue, Aug 10, 2021 at 10:06 AM Thomas Adams <tea3rd at gmail.com> wrote:
> >>
> >>> Hi all!
> >>>
> >>> I just upgraded from Ubuntu 18.04 to 20.04 and have to
> >>> re-compile/install
> >>> GRASS 7.8.5. I'm getting these errors:
> >>>
> >>> Errors in:
> >>> /home/teaiii/grass-7.8.5/lib/python/ctypes
> >>> /home/teaiii/grass-7.8.5/vector/v.out.ogr
> >>> /home/teaiii/grass-7.8.5/man
> >>>
> >>
> >> What are the actual errors when you go in the directories and run make?
> >>
> >>>
> >>> I'm sure I have created some library incompatibilities, so I'm trying
> to
> >>> identify where the problems are. I know I have python 3.8 installed,
> but
> >>> when I run python -V I get:
> >>>
> >>> Python 2.7.18
> >>>
> >>> Do I need to compile against python 3.8; if so, how do I do that?
> >>>
> >>> My configure looks like this:
> >>>
> >>> CFLAGS="-O2 -Wall" LDFLAGS="-s" ./configure \
> >>> --enable-64bit \
> >>> --with-cxx \
> >>> --enable-largefile=yes \
> >>> --with-nls \
> >>> --with-readline \
> >>> --with-pthread \
> >>> --with-gdal=/usr/local/bin/gdal-config \
> >>> --with-proj --with-proj-share=/usr/local/share/proj \
> >>> --with-proj-includes=/usr/local/include \
> >>> --with-proj-libs=/usr/local/lib \
> >>> --with-geos=/usr/local/bin/geos-config \
> >>> --with-wxwidgets=/usr/local/bin/wx-config \
> >>> --with-cairo \
> >>> --with-opengl-libs=/usr/include/GL \
> >>> --with-freetype=yes \
> >>> --with-freetype-includes=/usr/include/freetype2/ \
> >>> --with-postgres=yes \
> >>> --with-postgres-includes=/usr/local/include \
> >>> --with-sqlite=yes \
> >>> --with-mysql=yes \
> >>> --with-mysql-includes=/usr/include/mysql \
> >>> --with-odbc=no \
> >>> --with-blas \
> >>> --with-lapack \
> >>> --with-liblas=yes \
> >>> --with-liblas-config=/usr/bin/liblas-config \
> >>> --with-netcdf=/usr/local/bin/nc-config \
> >>> --with-blas-libs=/usr/local/lib \
> >>> --with-lapack-includes=/usr/include \
> >>> --with-lapack-libs=/usr/lib \
> >>> --with-blas-includes=/usr/local/include \
> >>> --with-zstd \
> >>> --with-zstd-includes=/usr/local/include \
> >>> --with-zstd-libs=/usr/local/lib
> >>>
> >>> with no errors.
> >>>
> >>> Any/all suggestions are appreciated...
> >>>
> >>> Regards,
> >>> Tom
> >>>
> >>> --
> >>>
> >>> _______________________________________________
> >>> grass-dev mailing list
> >>> grass-dev at lists.osgeo.org
> >>> https://lists.osgeo.org/mailman/listinfo/grass-dev
> >>>
> >>
> >
> > --
> > Thomas E Adams, III
> > 207 Chowning Place
> > Blacksburg, VA 24060
> > tea3rd at gmail.com (personal)
> > tea at terrapredictions.org (work)
> >
> > 1 (513) 739-9512 (cell)
> >
>


-- 
Thomas E Adams, III
207 Chowning Place
Blacksburg, VA 24060
tea3rd at gmail.com (personal)
tea at terrapredictions.org (work)

1 (513) 739-9512 (cell)
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