[postgis-users] GDAL problems (Kyngesbury GDAL)
Dheeraj Chand
dheeraj at dheerajchand.com
Fri Dec 27 20:33:02 PST 2013
Hi, all,
I was working on a project, that at a high level, can be described as :
1. Connect Python to PostGIS,
2. Grab spatial tables' data,
3. *PROCESS*,
4. Spit out shapefiles.
In the process of doing this, I was trying to use the Python GDAL library in a new virtualenv called geo, but I got these errors. I am using William Kyngesbury's GDAL 1.10 for OS X, and I'm running into crazy errors. I am following the instructions from here (http://linfiniti.com/2013/02/installing-python-gdal-into-a-python-virtualenv-in-osx/), and this is what happened in my shell.
Can anyone help me out?
Best,
-dx
-----------------------------------
REINHEIT:~ dheerajchand$ cd ~/Python_Environments/geo/
REINHEIT:geo dheerajchand$ cd build/
REINHEIT:build dheerajchand$ ls
total 8
drwxr-xr-x 4 dheerajchand staff 136B Dec 27 18:10 ./
drwxr-xr-x 7 dheerajchand staff 238B Dec 27 18:10 ../
drwxr-xr-x 22 dheerajchand staff 748B Dec 27 18:10 GDAL/
-rw-r--r-- 1 dheerajchand staff 185B Dec 27 18:10 pip-delete-this-directory.txt
/Users/dheerajchand/Python_Environments/geo/build
REINHEIT:build dheerajchand$ source ~/Python_Environments/geo/bin/activate
(geo)REINHEIT:build dheerajchand$ pip install --no-install GDAL
Downloading/unpacking GDAL
Running setup.py egg_info for package GDAL
Successfully downloaded GDAL
(geo)REINHEIT:build dheerajchand$ pip freeze
numpy==1.8.0
psycopg2==2.5.1
wsgiref==0.1.2
(geo)REINHEIT:build dheerajchand$ sudo find / -name gdal-config
Password:
find: /dev/fd/3: Not a directory
find: /dev/fd/4: Not a directory
/Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config
/Library/Frameworks/GDAL.framework/Versions/1.10/unix/bin/gdal-config
/Library/Frameworks/GDAL.framework/Versions/1.7/Programs/gdal-config
/Library/Frameworks/GDAL.framework/Versions/1.8/Programs/gdal-config
/Library/Frameworks/GDAL.framework/Versions/1.9/Programs/gdal-config
/Library/Frameworks/GDAL.framework/Versions/1.9/unix/bin/gdal-config
/opt/opengeo/pgsql/9.1/bin/gdal-config
(geo)REINHEIT:build dheerajchand$ cd GDAL/
(geo)REINHEIT:GDAL dheerajchand$ python setup.py build_ext \
> --gdal-config=/Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config \
> --library-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/
running build_ext
gcc-4.2 not found, using clang instead
building 'osgeo._gdal' extension
creating build
creating build/temp.macosx-10.6-intel-2.7
creating build/temp.macosx-10.6-intel-2.7/extensions
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I../../port -I../../gcore -I../../alg -I../../ogr/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/gdal_wrap.o
extensions/gdal_wrap.cpp:2853:10: fatal error: 'cpl_port.h' file not found
#include "cpl_port.h"
^
1 error generated.
error: command 'clang' failed with exit status 1
(geo)REINHEIT:GDAL dheerajchand$ python setup.py build_ext --gdal-config=/Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config --library-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ --include-dirs=/Library/Frameworks/GDAL.framework/Versions/1.
1.10/ 1.7/ 1.8/ 1.9/
(geo)REINHEIT:GDAL dheerajchand$ python setup.py build_ext --gdal-config=/Library/Frameworks/GDAL.framework/Versions/1.10/Programs/gdal-config --library-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ --include-dirs=/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/
running build_ext
gcc-4.2 not found, using clang instead
building 'osgeo._gdal' extension
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdal_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/gdal_wrap.o
extensions/gdal_wrap.cpp:7501:31: warning: conversion from string literal to
'char *' is deprecated [-Wdeprecated-writable-strings]
PyObject *item_list = PyMapping_Items( obj1 );
^
/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7/abstract.h:1354:50: note:
expanded from macro 'PyMapping_Items'
#define PyMapping_Items(O) PyObject_CallMethod(O,"items",NULL)
^
1 warning generated.
extensions/gdal_wrap.cpp:7501:31: warning: conversion from string literal to
'char *' is deprecated [-Wdeprecated-writable-strings]
PyObject *item_list = PyMapping_Items( obj1 );
^
/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7/abstract.h:1354:50: note:
expanded from macro 'PyMapping_Items'
#define PyMapping_Items(O) PyObject_CallMethod(O,"items",NULL)
^
1 warning generated.
creating build/lib.macosx-10.6-intel-2.7
creating build/lib.macosx-10.6-intel-2.7/osgeo
c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/gdal_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_gdal.so
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
building 'osgeo._gdalconst' extension
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdalconst_wrap.c -o build/temp.macosx-10.6-intel-2.7/extensions/gdalconst_wrap.o
clang -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/gdalconst_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_gdalconst.so
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
building 'osgeo._osr' extension
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/osr_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/osr_wrap.o
c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/osr_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_osr.so
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
building 'osgeo._ogr' extension
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/ogr_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/ogr_wrap.o
c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/ogr_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_ogr.so
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
building 'osgeo._gdal_array' extension
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -I/Library/Frameworks/GDAL.framework/Versions/1.10/Headers/ -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include -I/Library/Frameworks/GDAL.framework/Versions/1.10/include -c extensions/gdal_array_wrap.cpp -o build/temp.macosx-10.6-intel-2.7/extensions/gdal_array_wrap.o
In file included from extensions/gdal_array_wrap.cpp:2899:
In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760:
/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning:
"Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
1 warning generated.
In file included from extensions/gdal_array_wrap.cpp:2899:
In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from /Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760:
/Users/dheerajchand/Python_Environments/geo/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning:
"Using deprecated NumPy API, disable it by " "#defining
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
1 warning generated.
c++ -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-intel-2.7/extensions/gdal_array_wrap.o -L/Library/Frameworks/GDAL.framework/Versions/1.10/unix/lib/ -L/Library/Frameworks/GDAL.framework/Versions/1.10/lib -lgdal -o build/lib.macosx-10.6-intel-2.7/osgeo/_gdal_array.so
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
ld: warning: directory not found for option '-L/Library/Frameworks/GDAL.framework/Versions/1.10/lib'
(geo)REINHEIT:GDAL dheerajchand$ pip install --no-download GDAL
Installing collected packages: GDAL
Running setup.py install for GDAL
gcc-4.2 not found, using clang instead
Successfully installed GDAL
Cleaning up...
(geo)REINHEIT:GDAL dheerajchand$ python
Python 2.7.3 (v2.7.3:70274d53c1dd, Apr 9 2012, 20:52:43)
[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from osgeo import gdal
>>> gdal.__version__
Segmentation fault: 11
(geo)REINHEIT:GDAL dheerajchand$
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