GDAL dependencies during PostGIS upgrade
Regina Obe
lr at pcorp.us
Tue Feb 20 21:06:04 PST 2024
Removing shouldn’t be a problem as I never install those. I suspect it contains the commandline tools, not something postgresql needs to run. Those probably get installed in the system bin instead of the postgresql bin, which is why you can have only one of them.
From: Nikhil Shetty <nikhil.dba04 at gmail.com>
Sent: Tuesday, February 20, 2024 11:33 PM
To: Regina Obe <lr at pcorp.us>
Cc: PostGIS Users Discussion <postgis-users at lists.osgeo.org>
Subject: Re: GDAL dependencies during PostGIS upgrade
Hi,
I tired installing the single package but still the same error
yum install -y postgis33_15-client-3.3.5-1PGDG.rhel8.x86_64.rpm
Last metadata expiration check: 0:01:18 ago on Wed 21 Feb 2024 02:51:19 AM UTC.
Dependencies resolved.
==============================================================================================================================================================================================================================
Package Architecture Version Repository Size
==============================================================================================================================================================================================================================
Installing:
postgis33_15-client x86_64 3.3.5-1PGDG.rhel8 @commandline 289 k
Transaction Summary
==============================================================================================================================================================================================================================
Install 1 Package
Total size: 289 k
Installed size: 1.4 M
Downloading Packages:
Running transaction check
Transaction check succeeded.
Running transaction test
Error: Transaction test error:
file /usr/lib/.build-id/b6/89201f4430759c8544cd168dc6ba3e24f7d912 from install of postgis33_15-client-3.3.5-1PGDG.rhel8.x86_64 conflicts with file from package postgis33_13-client-3.3.5-1PGDG.rhel8.x86_64
Alternatively just remove the postgis_33_13_client
-- Will this create a problem with the existing installation of PostGIS?. I am asking because we are just installing the new packages for now and we will do the actual postgres upgrade during a downtime window
Thanks,
Nikhil
On Tue, Feb 20, 2024 at 11:30 PM Regina Obe <lr at pcorp.us <mailto:lr at pcorp.us> > wrote:
I’m guessing you can’t have both clients installed. Not sure what is in the client package.
What if you don’t do
yum install -y postgis_33_15*
But instead just
yum install -y postgis_33_15
I’m guessing whatever that client is, they probably get installed in the same place, so you only need one of them.
Alternatively just remove the postgis_33_13_client
From: Nikhil Shetty <nikhil.dba04 at gmail.com <mailto:nikhil.dba04 at gmail.com> >
Sent: Tuesday, February 20, 2024 12:07 PM
To: Regina Obe <lr at pcorp.us <mailto:lr at pcorp.us> >
Cc: PostGIS Users Discussion <postgis-users at lists.osgeo.org <mailto:postgis-users at lists.osgeo.org> >
Subject: Re: GDAL dependencies during PostGIS upgrade
Hi Regina,
I upgraded the existing PostGIS 3.1.2 to 3.3.5 on PG13 but now when I am trying to install PostGIS 3.3.5 for PG15 , I am getting below error
Error: Transaction test error:
file /usr/lib/.build-id/b6/89201f4430759c8544cd168dc6ba3e24f7d912 from install of postgis33_15-client-3.3.5-1PGDG.rhel8.x86_64 conflicts with file from package postgis33_13-client-3.3.5-1PGDG.rhel8.x86_64
Do you know how we can resolve this ?
Complete install o/p
yum install -y postgis33_15*
Last metadata expiration check: 0:01:21 ago on Tue 20 Feb 2024 05:01:03 PM UTC.
Dependencies resolved.
==============================================================================================================================================================================================================================
Package Architecture Version Repository Size
==============================================================================================================================================================================================================================
Installing:
postgis33_15 x86_64 3.3.5-1PGDG.rhel8 @commandline 4.8 M
postgis33_15-client x86_64 3.3.5-1PGDG.rhel8 @commandline 289 k
postgis33_15-devel x86_64 3.3.5-1PGDG.rhel8 @commandline 8.3 k
postgis33_15-utils x86_64 3.3.5-1PGDG.rhel8 @commandline 44 k
Transaction Summary
==============================================================================================================================================================================================================================
Install 4 Packages
Total size: 5.1 M
Installed size: 45 M
Downloading Packages:
Running transaction check
Transaction check succeeded.
Running transaction test
Error: Transaction test error:
file /usr/lib/.build-id/b6/89201f4430759c8544cd168dc6ba3e24f7d912 from install of postgis33_15-client-3.3.5-1PGDG.rhel8.x86_64 conflicts with file from package postgis33_13-client-3.3.5-1PGDG.rhel8.x86_64
Thanks,
Nikhil
On Fri, Feb 16, 2024 at 11:16 AM Nikhil Shetty <nikhil.dba04 at gmail.com <mailto:nikhil.dba04 at gmail.com> > wrote:
Hi Regina,
We are upgrading from PG 13 3.1.2 to PG 15 3.3.5
I forget if pg_upgrade checks the old .so to see if it can still load it or if it only checks if the new .so it is expecting in the new cluster is still available.
pg_upgrade is checking in the PG13 lib whether the .so file exists or not.
If it does check, I’d try upgrading to a newer PostGIS on your older cluster, doesn’t need to be the same, just one where the gdals are compatible.
We might have to go with this approach because it checks the .so file in old version
Error:
pg_dump: error: query failed: ERROR: could not access file "$libdir/postgis-3": No such file or directory
pg_dump: detail: Query was: EXECUTE dumpFunc('23873')
Missing .so files:
-0-root at host:/usr/pgsql-13/lib # ls -l /usr/pgsql-13/lib/postgis*
ls: cannot access '/usr/pgsql-13/lib/postgis*': No such file or directory
-2-root at host:/usr/pgsql-13/lib # ls -l /usr/pgsql-15/lib/postgis*
/usr/pgsql-15/lib/postgis-3.so
/usr/pgsql-15/lib/postgis_raster-3.so
/usr/pgsql-15/lib/postgis_sfcgal-3.so
/usr/pgsql-15/lib/postgis_topology-3.so
Thanks,
Nikhil
On Fri, Feb 16, 2024 at 10:53 AM Regina Obe <lr at pcorp.us <mailto:lr at pcorp.us> > wrote:
Nikhil,
Which version of PostgreSQL are you upgrading from.
I forget if pg_upgrade checks the old .so to see if it can still load it or if it only checks if the new .so it is expecting in the new cluster is still available.
If it doesn’t check the old to try to load the lib, dropping postgis-3.1.2 should work just fine.
Since 3.0, the .so file didn’t change, so pg_upgrading from say a PG 13 3.1.2 to a PG 15 3.3.5 should work just fine.
If it does check, I’d try upgrading to a newer PostGIS on your older cluster, doesn’t need to be the same, just one where the gdals are compatible.
From: Nikhil Shetty <nikhil.dba04 at gmail.com <mailto:nikhil.dba04 at gmail.com> >
Sent: Thursday, February 15, 2024 11:37 PM
To: PostGIS Users Discussion <postgis-users at lists.osgeo.org <mailto:postgis-users at lists.osgeo.org> >
Subject: GDAL dependencies during PostGIS upgrade
Hi Team,
We are planning to upgrade postgres to 15 and postgis from 3.1.2 to 3.3.5.
While installing postgis 3.3.5 we found some dependency issues with gdal36, we were able to workaround by removing postgis 3.1.2 and gdal32 packages but for postgres upgrade we need both postgis (3.1.2 and 3.3.5) packages to be present.
Below is the issue when installing gdal36 which is required for postgis 3.3.5
-0-root@<host1>:/tmp # yum install gdal36-libs-3.6.4-6PGDG.rhel8.x86_64.rpm
Last metadata expiration check: 0:00:58 ago on Wed 31 Jan 2024 02:01:35 PM UTC.
Error:
Problem: problem with installed package gdal32-libs-3.2.3-1.rhel8.x86_64
- package gdal32-libs-3.2.3-1.rhel8.x86_64 requires libarmadillo.so.9()(64bit), but none of the providers can be installed
- package gdal32-libs-3.2.2-13.rhel8.x86_64 requires libarmadillo.so.9()(64bit), but none of the providers can be installed
- cannot install both armadillo-12.6.6-1.el8.x86_64 and armadillo-9.700.2-1.el8.x86_64
- cannot install both armadillo-9.700.2-1.el8.x86_64 and armadillo-12.6.6-1.el8.x86_64
- package gdal36-libs-3.6.4-6PGDG.rhel8.x86_64 requires libarmadillo.so.12()(64bit), but none of the providers can be installed
- conflicting requests
(try to add '—allowerasing' to command line to replace conflicting packages or '—skip-broken' to skip uninstallable packages or '—nobest' to use not only best candidate packages)
Thanks,
Nikhil
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