[Qgis-user] Python Error when lauching QGIS + deprecation Warming , MacOsX, no brew

Camille Baillon baillon.camille at gmail.com
Thu Jul 13 04:47:12 PDT 2017


Hello everyone, I'm quite new to the QGIS platform, but after several 
days scrolling all the forums about the topic, trying to install, 
uninstall, deleting possible files that could be problematic, I'd like 
to submit the problem I'm encountering and would be very grateful for 
any kind of information who could bring some answer.

I'm trying to work with *QGIS 2.18.9* on *Mac OS X 10.9.5*. [installed 
from http://www.kyngchaos.com/software/qgis ] Warning message from the 
Python-Panel, right direct after the start of QGIS:

        *Failed |CDLL(/opt/local/lib/libgeos_c.dylib)|*

To resume what I've already investigated: (1) uninstall Python 3.6 (2) 
uninstall all the packages linked with Homebrew (3) uninstall Xquartz 
(4) uninstall/reinstall the GDAL/GEOS/NUMPY/MATPLOTLIB/SQLITE3 Package

I know that the problem could be linked with an incompatibility in the 
python versions or files installed with other applications or wrong path 
, but I'm now out of idea and I really don't know what to do, aside from 
asking for help!

The second Message, a DeprecationWarning message may be a complement to 
analyse the problem (but I'm not sure if there is a link between the 
two, and if not, I'm sorry for the confusion!)

Thank you all for your help!

DeprecationWarning :

warning:/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py:81: 
DeprecationWarning: Converters and adapters are deprecated. Please use 
only supported SQLite types. Any type mapping should happen in layer 
above this module.

register_adapter(datetime.date, adapt_date)

traceback: File "<string>", line 1, in <module>

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 49, in initPluginInstaller

pluginInstaller = QgsPluginInstaller()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 65, in __init__

plugins.getAllInstalled()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 718, in getAllInstalled

plugin = self.getInstalledPlugin(key, path=path, readOnly=readOnly, 
testLoad=testLoadThis)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 622, in getInstalledPlugin

pkg = __import__(key)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/__init__.py", 
line 29, in <module>

from processing.tools.general import * # NOQA

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/general.py", 
line 31, in <module>

from processing.core.Processing import Processing

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/Processing.py", 
line 42, in <module>

from processing.script.ScriptUtils import ScriptUtils

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptUtils.py", 
line 30, in <module>

from processing.script.ScriptAlgorithm import ScriptAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptAlgorithm.py", 
line 33, in <module>

from processing.core.GeoAlgorithm import GeoAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/GeoAlgorithm.py", 
line 41, in <module>

from processing.core.parameters import ParameterRaster, ParameterVector, 
ParameterMultipleInput, ParameterTable, Parameter

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/parameters.py", 
line 32, in <module>

from processing.tools.vector import resolveFieldIndex

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/vector.py", 
line 47, in <module>

from processing.tools import dataobjects, spatialite, postgis

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/spatialite.py", 
line 29, in <module>

from pyspatialite import dbapi2 as sqlite

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py", 
line 86, in <module>

register_adapters_and_converters()

2017-07-13T13:41:45 1 
warning:/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py:82: 
DeprecationWarning: Converters and adapters are deprecated. Please use 
only supported SQLite types. Any type mapping should happen in layer 
above this module.

register_adapter(datetime.datetime, adapt_datetime)

traceback: File "<string>", line 1, in <module>

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 49, in initPluginInstaller

pluginInstaller = QgsPluginInstaller()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 65, in __init__

plugins.getAllInstalled()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 718, in getAllInstalled

plugin = self.getInstalledPlugin(key, path=path, readOnly=readOnly, 
testLoad=testLoadThis)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 622, in getInstalledPlugin

pkg = __import__(key)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/__init__.py", 
line 29, in <module>

from processing.tools.general import * # NOQA

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/general.py", 
line 31, in <module>

from processing.core.Processing import Processing

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/Processing.py", 
line 42, in <module>

from processing.script.ScriptUtils import ScriptUtils

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptUtils.py", 
line 30, in <module>

from processing.script.ScriptAlgorithm import ScriptAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptAlgorithm.py", 
line 33, in <module>

from processing.core.GeoAlgorithm import GeoAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/GeoAlgorithm.py", 
line 41, in <module>

from processing.core.parameters import ParameterRaster, ParameterVector, 
ParameterMultipleInput, ParameterTable, Parameter

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/parameters.py", 
line 32, in <module>

from processing.tools.vector import resolveFieldIndex

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/vector.py", 
line 47, in <module>

from processing.tools import dataobjects, spatialite, postgis

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/spatialite.py", 
line 29, in <module>

from pyspatialite import dbapi2 as sqlite

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py", 
line 86, in <module>

register_adapters_and_converters()

2017-07-13T13:41:45 1 
warning:/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py:83: 
DeprecationWarning: Converters and adapters are deprecated. Please use 
only supported SQLite types. Any type mapping should happen in layer 
above this module.

register_converter("date", convert_date)

traceback: File "<string>", line 1, in <module>

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 49, in initPluginInstaller

pluginInstaller = QgsPluginInstaller()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 65, in __init__

plugins.getAllInstalled()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 718, in getAllInstalled

plugin = self.getInstalledPlugin(key, path=path, readOnly=readOnly, 
testLoad=testLoadThis)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 622, in getInstalledPlugin

pkg = __import__(key)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/__init__.py", 
line 29, in <module>

from processing.tools.general import * # NOQA

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/general.py", 
line 31, in <module>

from processing.core.Processing import Processing

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/Processing.py", 
line 42, in <module>

from processing.script.ScriptUtils import ScriptUtils

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptUtils.py", 
line 30, in <module>

from processing.script.ScriptAlgorithm import ScriptAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptAlgorithm.py", 
line 33, in <module>

from processing.core.GeoAlgorithm import GeoAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/GeoAlgorithm.py", 
line 41, in <module>

from processing.core.parameters import ParameterRaster, ParameterVector, 
ParameterMultipleInput, ParameterTable, Parameter

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/parameters.py", 
line 32, in <module>

from processing.tools.vector import resolveFieldIndex

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/vector.py", 
line 47, in <module>

from processing.tools import dataobjects, spatialite, postgis

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/spatialite.py", 
line 29, in <module>

from pyspatialite import dbapi2 as sqlite

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py", 
line 86, in <module>

register_adapters_and_converters()

2017-07-13T13:41:45 1 
warning:/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py:84: 
DeprecationWarning: Converters and adapters are deprecated. Please use 
only supported SQLite types. Any type mapping should happen in layer 
above this module.

register_converter("timestamp", convert_timestamp)

traceback: File "<string>", line 1, in <module>

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 49, in initPluginInstaller

pluginInstaller = QgsPluginInstaller()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer.py", 
line 65, in __init__

plugins.getAllInstalled()

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 718, in getAllInstalled

plugin = self.getInstalledPlugin(key, path=path, readOnly=readOnly, 
testLoad=testLoadThis)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/pyplugin_installer/installer_data.py", 
line 622, in getInstalledPlugin

pkg = __import__(key)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/__init__.py", 
line 29, in <module>

from processing.tools.general import * # NOQA

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/general.py", 
line 31, in <module>

from processing.core.Processing import Processing

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/Processing.py", 
line 42, in <module>

from processing.script.ScriptUtils import ScriptUtils

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptUtils.py", 
line 30, in <module>

from processing.script.ScriptAlgorithm import ScriptAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/script/ScriptAlgorithm.py", 
line 33, in <module>

from processing.core.GeoAlgorithm import GeoAlgorithm

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/GeoAlgorithm.py", 
line 41, in <module>

from processing.core.parameters import ParameterRaster, ParameterVector, 
ParameterMultipleInput, ParameterTable, Parameter

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/parameters.py", 
line 32, in <module>

from processing.tools.vector import resolveFieldIndex

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/vector.py", 
line 47, in <module>

from processing.tools import dataobjects, spatialite, postgis

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/tools/spatialite.py", 
line 29, in <module>

from pyspatialite import dbapi2 as sqlite

File 
"/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", 
line 607, in _import

mod = _builtin_import(name, globals, locals, fromlist, level)

File 
"/Library/Frameworks/SQLite3.framework/Versions/C/Python/2.7/pyspatialite/dbapi2.py", 
line 86, in <module>

register_adapters_and_converters()

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