[GeoNode-devel] GeoServer crashed in GeoNode 2.10

Mon Nov 23 10:42:49 PST 2020

I've upgraded the jdk to 11 but with no result.
Stopped Tomcat and started GeoServer with paver and it works.

On Mon, Nov 23, 2020 at 6:24 PM Paolo Pasquali <paolo.pasquali at gmail.com>
wrote:

> Ciao Alessio,
>
> I have a production installation made in GeoNode 2.10 with some python2
> customizations whose GeoServer suddenly crashed. So I cannot easily upgrade.
> So I made another 2.10 installation in order to tackle the issue. Without
> much luck.
>
>
>
>
> On Mon, Nov 23, 2020 at 6:21 PM Alessio Fabiani <
> alessio.fabiani at geo-solutions.it> wrote:
>
>> Hello Paolo,
>> if you are doing a fresh installation, why are you using GeoNode 2.10?
>>
>> Il giorno lun 23 nov 2020 alle ore 18:10 Paolo Pasquali <
>> paolo.pasquali at gmail.com> ha scritto:
>>
>>> Hi,
>>>
>>> Sorry for the spam.
>>> I made a fresh installation and an empty GeoServer crashed after the
>>> first restart when I was configuring uwgi and nginx (2.10 Advanced
>>> installation on Ubuntu 18).
>>> I'm not able to start it again in any way. I'm getting the same errors
>>> on the two servers.
>>>
>>> Is there any known issue? Should I upgrade java to 11?
>>>
>>> Thanks,
>>>
>>> P.
>>>
>>>
>>>
>>>
>>>
>>> On Mon, Nov 23, 2020 at 2:41 PM Paolo Pasquali <paolo.pasquali at gmail.com>
>>> wrote:
>>>
>>>> Dear devs,
>>>>
>>>> Please find attached the full geoserver.log since tomcat restart and
>>>> after removing the out of sync gwc layers.
>>>> Thanks.
>>>>
>>>> Ciao
>>>>
>>>> P.
>>>>
>>>> On Mon, Nov 23, 2020 at 12:37 PM Paolo Pasquali <
>>>> paolo.pasquali at gmail.com> wrote:
>>>>
>>>>> Dear devs,
>>>>>
>>>>> I've removed all layer configuration files in gwc-layers that were
>>>>> causing errors but still GeoServer does not start.
>>>>> The Tomcat log file caught some errors:
>>>>>
>>>>> 23-Nov-2020 11:26:58.714 SEVERE [localhost-startStop-1]
>>>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>>>> The web application [geoserver] created a ThreadLocal with key of type
>>>>> [com.sun.jna.Structure$2] (value [com.sun.jna.Structure$2 at 26050621])
>>>>> and a value of type [com.sun.jna.Structure.StructureSet] (value [[]]) but
>>>>> failed to remove it when the web application was stopped. Threads are going
>>>>> to be renewed over time to try and avoid a probable memory leak.
>>>>>
>>>>> 23-Nov-2020 11:26:58.714 SEVERE [localhost-startStop-1]
>>>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>>>> The web application [geoserver] created a ThreadLocal with key of type
>>>>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal at 215fba9b]) and
>>>>> a value of type
>>>>> [org.springframework.security.core.context.SecurityContextImpl] (value
>>>>> [org.springframework.security.core.context.SecurityContextImpl at ffffffff:
>>>>> Null authentication]) but failed to remove it when the web application was
>>>>> stopped. Threads are going to be renewed over time to try and avoid a
>>>>> probable memory leak.
>>>>>
>>>>> 23-Nov-2020 11:26:58.723 SEVERE [localhost-startStop-1]
>>>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>>>> The web application [geoserver] created a ThreadLocal with key of type
>>>>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal at 53488849]) and
>>>>> a value of type
>>>>> [org.geotools.referencing.operation.projection.TransverseMercator.Provider]
>>>>> (value [PROJECTION["Transverse_Mercator"]]) but failed to remove it when
>>>>> the web application was stopped. Threads are going to be renewed over time
>>>>> to try and avoid a probable memory leak.
>>>>>
>>>>> 23-Nov-2020 11:26:58.723 SEVERE [localhost-startStop-1]
>>>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>>>> The web application [geoserver] created a ThreadLocal with key of type
>>>>> [java.lang.ThreadLocal.SuppliedThreadLocal] (value
>>>>> [java.lang.ThreadLocal$SuppliedThreadLocal at 1c220bed]) and a value of
>>>>> type [org.geowebcache.storage.CompositeBlobStore.StoreSuitabilityCheck]
>>>>> (value [EXISTING]) but failed to remove it when the web application was
>>>>> stopped. Threads are going to be renewed over time to try and avoid a
>>>>> probable memory leak.
>>>>>
>>>>> While the GeoServer log has some warnings only, some are:
>>>>>
>>>>> 2020-11-23 11:31:42,676 WARN [geoserver.config] - Error reading
>>>>> resource URL
>>>>> [jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties]
>>>>>
>>>>> java.io.FileNotFoundException: URL
>>>>> [jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties]
>>>>> cannot be resolved to absolute file path because it does not reside in the
>>>>> file system:
>>>>> jar:file:/usr/local/apache-tomcat8/webapps/geoserver/WEB-INF/lib/gs-geofence-server-2.15-SNAPSHOT.jar!/geofence-default-override.properties
>>>>> ...
>>>>>
>>>>> 2020-11-23 11:31:43,581 WARN [ejb.Ejb3Configuration] -
>>>>> hibernate.connection.autocommit = false break the EJB3 specification
>>>>>
>>>>> 2020-11-23 11:31:43,613 WARN [dialect.H2Dialect] - The 1.1.119 version
>>>>> of H2 implements temporary table creation such that it commits current
>>>>> transaction; multi-table, bulk hql/jpaql will not work properly
>>>>>
>>>>> 2020-11-23 11:31:43,863 WARN [dialect.H2Dialect] - The 1.1.119 version
>>>>> of H2 implements temporary table creation such that it commits current
>>>>> transaction; multi-table, bulk hql/jpaql will not work properly
>>>>>
>>>>> 2020-11-23 11:31:44,033 WARN [cache.EhCacheProvider] - Could not find
>>>>> configuration [RuleLimits]; using defaults.
>>>>>
>>>>> 2020-11-23 11:31:44,077 WARN [cache.EhCacheProvider] - Could not find
>>>>> configuration [Rule]; using defaults.
>>>>>
>>>>> 2020-11-23 11:31:44,085 WARN [cache.EhCacheProvider] - Could not find
>>>>> configuration [usergroup]; using defaults.
>>>>>
>>>>> 2020-11-23 11:31:44,090 WARN [cache.EhCacheProvider] - Could not find
>>>>> configuration [GSUser]; using defaults.
>>>>>
>>>>> 2020-11-23 11:31:44,096 WARN [cache.EhCacheProvider] - Could not find
>>>>> configuration [GFUser]; using defaults.
>>>>>
>>>>> 2020-11-23 11:31:44,101 WARN [cache.EhCacheProvider] - Could not find
>>>>> configuration [gsinstance]; using defaults.
>>>>>
>>>>> 2020-11-23 11:31:44,107 WARN [cache.EhCacheProvider] - Could not find
>>>>> configuration [LayerDetails]; using defaults.
>>>>>
>>>>> 2020-11-23 11:31:45,527 WARN [org.geoserver] - Failed to load data
>>>>> store 'geonode_data'
>>>>>
>>>>> Any hint on how to proceed?
>>>>>
>>>>> Thanks!
>>>>>
>>>>> Paolo
>>>>>
>>>>>
>>>>>
>>>>> On Mon, Nov 23, 2020 at 10:28 AM Paolo Pasquali <
>>>>> paolo.pasquali at gmail.com> wrote:
>>>>>
>>>>>> Dear devs,
>>>>>>
>>>>>> While updating some layers metadata using the GeoNode admin UI,
>>>>>> suddenly GeoServer crashed and now I'm not able to restart it anymore.
>>>>>> From the logs I get some errors:
>>>>>>
>>>>>>
>>>>>> ERROR [context.ContextLoader] - Context initialization failed
>>>>>>
>>>>>> org.springframework.beans.factory.BeanCreationException: Error
>>>>>> creating bean with name 'wcsService-1.0.0' defined in URL
>>>>>>
>>>>>> Invocation of init method failed; nested exception is
>>>>>> java.lang.IllegalStateException: Could not locate a layer or layer group
>>>>>> with id LayerInfoImpl-52979d4a:172b8fc663e:-33fe within GeoServer
>>>>>> configuration, the GWC configuration seems to be out of synch
>>>>>>
>>>>>>
>>>>>> I have this kind of error related to several layers. My guess they
>>>>>> are related to the layers I tried to update in the admin ui.
>>>>>>
>>>>>>
>>>>>> The solution I've found on the web suggests removing the layers from
>>>>>> the gwc-layers folders and then running updatelayers.
>>>>>>
>>>>>>
>>>>>> Is this the only solution? Is there a painless fix?
>>>>>>
>>>>>>
>>>>>> Thanks for your help.
>>>>>>
>>>>>>
>>>>>> Ciao
>>>>>>
>>>>>>
>>>>>> P.
>>>>>>
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>> geonode-devel mailing list
>>> geonode-devel at lists.osgeo.org
>>> https://lists.osgeo.org/mailman/listinfo/geonode-devel
>>>
>>
>>
>> --
>>
>> ==
>>
>> GeoServer Professional Services from the experts! Visit
>> http://goo.gl/it488V for more information.
>> ==
>> Ing. Alessio Fabiani
>>
>> @alfa7691
>> Founder/Technical Lead
>>
>>
>> GeoSolutions S.A.S.
>> Via di Montramito 3/A - 55054  Massarosa (LU) - Italy
>> phone: +39 0584 962313
>> fax:     +39 0584 1660272
>> mob:   +39 331 6233686
>>
>>
>> http://www.geo-solutions.it
>> http://twitter.com/geosolutions_it
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